Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1392 ATGGAAACCTTAACTTCCACATCCAATTCTTGTCCCTCAACTCCCCGTTGGAATCTCGAGAGGCCATTTCTCACTGGACGTTTCCACCAGGAAGCAAAGGCTACTTCTCGTTTTGCTGAATTGAAATTGGATTCTTTCAGTAATGGGGGGCTGGAAAAGGCCATTGGCTGTTATGATGCTGCAATTCAGGAACTTATTGTAATTGATGATCTCCTTTCTGCCCTGCTTGGAGTTGAGGGACGCTATATTTCAATCAAAAGACTTCACGGCAAAGAGGATGAAGTTTCTTTCCTGGTTGATGCATCTATGGATTTGGCTCTCCAGGAGTTGGCAAAAAGAATATTTCCTCTGTGTGAGAGCTTTCTGATTATTAATCTGTTTGTTGAATCAAGATCTCAGTTCAAGAAGGGCTTAGTTAATCATGCCTTTGCTGCTGCACTTAGAGCTCTCCTTCTAGATTACCAAGCAATGGTAGCCCAGCTTGAGCACCAGTTTCGACTTGGTAGACTTTCCATCCAAGGATTGTGGTTTTACTGTCAGCCTATGATGGGTTCCATGCAAGCATTATCTGCAGTGACTCGGCAGGCTTCAGCTAATGATTTTGCAGGTTCTGCAGTTCTTAACCTCTTACAGAGCCAGGCCAAGGCTATGGCTGGTGATAATGCAGTGAGGTCTTTGCTGGAGAAGATGACACAGTGTGCAAGCAATGCTTACCTTGGTATATTAGAAAGATGGGTTTATGAGGGAGTTATTGATGATCCTTATGGTGAATTTTTCATTGCGGAAAACAAATCTCTACGGAAGGAGAGCCTCAATCAAGATTATGACACAAAGTATTGGAGGCAACGCTATAGTCTGAAGGATGGAATTCCTACCTTTCTTGCAAATATAGCAGGGATGATACTGACGACAGGAAAATATTTAAATGTCATGAGAGAGTGTGGGCATAATGTTCAGGTACCTGTTTCAGAAAATTCAAAGTTAATGAGTTTTGGCTCAAATCATCAGTATTTGGAGTGTGTAAAAGCTGCTTATGACTTTTCCAGTAGTGAGCTATTAAAACTTATTAAAGAAAAGTATGACCTAATGGGGAAGCTGAGATCAATTAAGCATTACCTGCTGCTTGATCAGGGTGATTTCTTGGTTCATTTTATGGACATTGCTCGAGATGAACTTTCAAAAAAGCTTGATGAGATTTCTGTAGAGAAGTTGCAGTCTCTACTGGATGTTGCCTTACGCACCACAGCGGCTGCAGCAGATCCTTGTCATGAGGATTTAACATGTTGTGTGGAAAGAACGTCATTACCCAAAAGCTTGCGTGCACTTAAGGATCTTGGTGACAATACAACTATTCCTGATAGCAATGATCAGGAAGAACCCATGGGCATTACTGGTCTTGAGGCATTTTCTTTAAGTTACAAGGTTAGATGGCCGTTGTCTATTGTTATATCATGGAAATCTCTATCAAAGTACCAGCTGATTTTTCGCTTTCTTTTCCACTGCAAACATGTGGAACGTCAGCTTTGTGGGGCATGGCAAGTGCATCAAGGGGTTCGTTCGCTTGATATCCGCGGTACTTCCATCTCAAGATCATCCTTACTCTGCCGTGCAATGCTTAAATTTATTAATAGCCTTCTTCATTATTTGACCTTTGAGGCAGGTCTTGAACCCAATTGGCACGTAATGCACAACCGGATTCAGACTGCGAAGAGTATTGATGAGGTTATCCAACATCATGATTTCTTCCTTGACAAGTGCCTCCGAGAATGTTTGCTTTTGTTGCCACAATTGCTTAAGAAGGTGGAGAGGTTGAAATTGCTTTGCCTGCAATATGCAGCAGCTACTCAGTGGTTGATTTCATCCTCCATTGACCTATGTAGGCCGGAGGAATCATCCGATAGTGCTATCAGTTCTGAAAAAGTCAAGCAATGGAATGGAAGAACTCCCAAGGGCGCGAAGCTAACCACCAACAACTCGGCTGTCTCCGAGTCTGTCATTAAATTTGAGAAGGAGTTCAATTCTGAGCTTCAGAGTTTGGGACCGATTCTGAGTAAAAGTTCCCAGGCTGAGCCATATTTAACTCACCTTGCTCAGTGGATTCTTGGCATTGAAATGACAAATAGGTTTTGA 2130 42.39 METLTSTSNSCPSTPRWNLERPFLTGRFHQEAKATSRFAELKLDSFSNGGLEKAIGCYDAAIQELIVIDDLLSALLGVEGRYISIKRLHGKEDEVSFLVDASMDLALQELAKRIFPLCESFLIINLFVESRSQFKKGLVNHAFAAALRALLLDYQAMVAQLEHQFRLGRLSIQGLWFYCQPMMGSMQALSAVTRQASANDFAGSAVLNLLQSQAKAMAGDNAVRSLLEKMTQCASNAYLGILERWVYEGVIDDPYGEFFIAENKSLRKESLNQDYDTKYWRQRYSLKDGIPTFLANIAGMILTTGKYLNVMRECGHNVQVPVSENSKLMSFGSNHQYLECVKAAYDFSSSELLKLIKEKYDLMGKLRSIKHYLLLDQGDFLVHFMDIARDELSKKLDEISVEKLQSLLDVALRTTAAAADPCHEDLTCCVERTSLPKSLRALKDLGDNTTIPDSNDQEEPMGITGLEAFSLSYKVRWPLSIVISWKSLSKYQLIFRFLFHCKHVERQLCGAWQVHQGVRSLDIRGTSISRSSLLCRAMLKFINSLLHYLTFEAGLEPNWHVMHNRIQTAKSIDEVIQHHDFFLDKCLRECLLLLPQLLKKVERLKLLCLQYAAATQWLISSSIDLCRPEESSDSAISSEKVKQWNGRTPKGAKLTTNNSAVSESVIKFEKEFNSELQSLGPILSKSSQAEPYLTHLAQWILGIEMTNRF 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12945909 12978517 + MC10g1110 Mch10g1392 678485

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1392 709 Pfam Gamma tubulin complex component C-terminal 362 697 IPR040457 GO:0043015(InterPro)
Mch10g1392 709 Gene3D - 362 707 IPR042241 -
Mch10g1392 709 PANTHER GAMMA TUBULIN COMPLEX PROTEIN 54 707 IPR007259 GO:0000226(InterPro)|GO:0000278(PANTHER)|GO:0000922(InterPro)|GO:0000923(PANTHER)|GO:0000930(PANTHER)|GO:0005813(PANTHER)|GO:0005815(InterPro)|GO:0007020(InterPro)|GO:0007020(PANTHER)|GO:0031122(PANTHER)|GO:0043015(InterPro)|GO:0043015(PANTHER)|GO:0051011(PANTHER)|GO:0051225(PANTHER)|GO:0051321(PANTHER)
Mch10g1392 709 Pfam Gamma tubulin complex component N-terminal 68 359 IPR041470 -
Mch10g1392 709 Coils Coil 144 164 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1392 K16569 - - csv:101206711 1278.46
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g610 . Blo03g01468 . . Bpe09g00136 Bpe08g01104 . . Cmo16g00981 . . . . . . . . . . . . . . . Cla10g00434 Cam10g0432 Cec10g0455 Cco10g0444 Clacu10g0440 Cmu10g1271 Cre10g0688 Cone6ag0029 . Cone14ag1205 Cone15ag1222 . Csa03g00442 . Cme06g02799 . Blo10g00860 . Bda12g00949 . . Bma07g01270 . Sed08g2940 . . . Cma16g00942 . Car16g00906 Cpe14g00766 . Bhi11g00501 Tan01g1805 Cmetu06g0464 . . Mch10g1392 . . . . . . . . Lsi05g00526 . Chy06g01875 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007026 1 2 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 3 1 37