Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1408 ATGTTCATGGCTTCCCCTGGGAATCCAAACCCAAATCCGACGAACCCACCATTTGATGTGCAGAAATTCTTTAAACCCACAATTGCAAACCCTACGGCGACCTCCCAAAACCCTACCCTCATGAATTCGCCTCCATTTCCGCCTCCTTCTTCCTCTTACCCTCCTCCCACTGGTCCTTTCTCTTACCCACTTCAGAACGCGCCATTTCACCATCCCTACCATCCCCCTCACCATGGCAATCAAGTTCCGTACTCTCAGGACCAGTTCTCCAATCTTCACCATCAGAGGTCTCTTTCTTACCCCACTCCCCCGCTTCAGCCTTCTCCGCCGCCGGTCAACATGGCTGTCCCTCAGAACAATCCGGCTCAGAGCTCCGGTGCCCGGATAATGGCTATGATTAGAGCCCCTGGCTCTAATCTTGAACCGCTCCCTCAGCCTCCTACTCCATTGGGTTCGTTGCCGTCTCCTTCCTCGGCCGTTCCTGAAGCTTCGGCGCCTCCGATAATGATGACCACCATTCCCATGATGCAGGGGGTCAATCCTGGCATCTCCCCCACGGGGCCGGTTCGAATGCCGAGCAGTAAGCTCCCCAAAGGGCGGCATTTGATCGGCGAGCATGTGGTGTATGATGTAGATGTTAGGCTTCAAGGAGAGATCCAGCCACAGCTGGAAGTGACGCCAATTACCAAGTATGGTTCAGATCCTCAGCTCGTGTTGGGGCGTCAAATTGCGGTCAACAAGACATATATATGCTATGGTTTGAAACAGGGAAACATTCGAGTTCTTAATATCAATACTGCACTAAGATCTTTGTTTCGAGGCCATGAAAAGAGGGTCACTGACATGGCATTCTTTGCCGAAGATGTTCACCTTTTGGCTAGTGTTGATGTAGGTGGACGAGTTTATGTTTGGAAGATTTCTGAGGGCCCTGATGAAGAATCTAAGCCGCAAATTGCTGGGAAAGTTGTTATCTCCCTTCATATGGAAGGAGGAGAGGGGGAAATTGAAGTTTTGGTAGTTGGATTTGGGAAGTCCGTACTGAGAATTGACACAACCAAAGTTGGGAAGGGTGAAAGCTTTTCTGCCGAAGCTCCTCTCAAATTTTCTCTTGAAAAGTTGATTGATGGCGTCCAGCTTGTTGGAAAGCATGATGGAGAAGTGACTGAGTTGTCCATGTGTCAGTGGATGACTTCTCGATTGGTGTCTGCTTCTATGGATGGAACGATCAAAATATGGGAGGATCGTAAGGCATCACCTCTGCTGGTTTTGAGGCCACATGATGGCCAACCAGTTAATGCAGCTACTTTTTTGACTGCTCCAAATAGACCAGATCACATTATACTCATCACAGCTGGGCCTCTTAATCGGGAAGTGAAAATATGGTCATCTGCAAGTGAGGAAGGTTGGCTGCTTCCTAGTGATGCTGAATCATGGAAATGCACCCAGACCCTGGAGTTGAAGAGTTCAGCTGAAAGTCAACTTGAAGAGGCATTCTTTAATCAAATTGTAGCCTTGTCTCAAGCTGGCCTTCTTTTACTTGCTAATGCTAAGAAGAATGCTATATATGCAATACACTTGGATTATGGTCTTAATCCAGCCACGACACGGATGGATTACATAGCAGAGTTCACTGTCACGATGCCCATTTTGAGTTTTACTGGAACAAGTGAGATATTAGACCGTCTAACACATATTGTCCAGGTTTATTGCGTACAAACACAAGCTATACAGCAGTATGCTTTAGACTTATCTCAGTGCTTACCCCCACCATTGGACAATCTGGGGTTAGAGAAGGCAGATTCTAATGTTTCACAGGATTCTGCAAGCGTTGAAGGGCTGGCTGCACTGTTTCCCTCTGGGAGTAAACCAACTGAGATGCCCTTCACTAGTTCTACACCCAGGGCTTCAGTGCTGGTCAATGGCTCTGAAAGTGCTGGTGCAGAAAGATATCCTGCAAGCACCACTTCTCAAGATGCAACGTCCGCTGCAAATACAGAATCTAAACCTGTTACACTGTCACCTGCAGCTAGTAATACAGACATTGTCTCTGCTGCATCACCTCCTCTTCCTTTGAGCCCACGCTTGTCTAGAAATCTGTCTGGTTTTAGAACTCCAGTGGGTGGCTTTGAGCCTATTGCTGCAGTTAGTGATCATGCTGGTGACCGACGGGGTAATGACTACCCAGTCAACCGACAAATAGATGCCATACACACAAATTTGTCTGAAGTGTCTTCATTGGATGATGAATCCAGAAACAACGAGGAGAAAACTTCACGGGAAGATCTGTCTAATGTCCTTAATCCTGCTATTGTGTTTAAGCATCCGACTCATCTGATTACCCCCTCTGAGATACTGATGGCTGTTTCTTCCTCTGAAACTACTAATGTCATTGAAGGAAAGAGTGATGTAGAGACAAATATCCAGGATGTAGTTGTTAACAATGATGTTGAAGATACTGAGCTAGAGGTTAAAGAGGTAGGAGAAATGAAGTCTCCTCAGAATAGTGAATATGCTAGTAGAGGTGACCCTCAAAACCTTCCTTTGGAGAACAAGGAAAAGTTCTTCTGCTCACAAGCTTCAGATCTTGGTATGGAAGTGGCCCGAGAATGTTGTGCACTATCATCTGAAACTTATGTCATTGAGGAGGCCCCACAAGTTGATGCTAATATAATGGATACAGAGGTAGATTCCGAAGCTGGTGAGGGAGATAGAACATCTGTCAAAGATGTTTCTGAAAAGGTTTCTGAATCCTCTATATCAATTACTCCGCAAATTCCAACACCTAGTACAAAGGGGAAAAAGAACAAGGGGAAAAGTTCTCAAGCTTCAGGATTGGCTTCCCCATCTCCAAGCGTTTTCAATTCTAACGAATCTTCCAGTGAACCCTGTGGTAGTTCGAGCCTTCCCCCACCAGAAGCTACTTTTTCTTCATTCTCAGCCATCCAAGATACACTGAATCAGATAATGAATACTCAGAAAGAAATGCAGAAGCAGATGCAGATGACACTTGCAGTTCCTGTCACCAAAGAAGGTAAAAGGCTGGAGGCAGCTCTTGGACGGAGCATGGAGAAGGCATTAAAAGCGAATAATGATGCATTATCGGCTCGGATTCAGGAAGAAAGTGCAAAAAATGAGAAGTTGTTGCGAGATACTACACAAAAGATAACCAATCTAGTTGCGAACTTTGTGAACAAGGACTTGCCTACCTTTTTAGAAAAAGCTCTGAAGAAGGAAATGGCTGCCATTGGACCTGCTGTGGTTCGCACAATAACGCCAGCTATTGAGAAAACAATTTCTTCTGGCATCGCAGATTCTTTCCAGAGAGGAGTAGGTGATAAGGCAGTGAATCAACTAGAGAAATCTGTTAACTCAAAACTTGAAGCTACTGTCGCTAGGCAAATTCAAGCGCAGTTTCAAACCTCTGGCAAGCAAGCCCTGCAGGATGCACTAAAATCTAGTTTTGAAGCATCAGTAATTCCTGCCTTTGAGATGTCGTGCAAAACCATGTTCGAGCAAGTAGATTCTACCTTTCAGAAAGGACTGGTTGAACATGCAGCTGCAGTTCAGCAGCACTTGGACTCTTCACATTCTTCGTTGGCACTTGCTCTGAGGGATTCTATAACTTCAGCATCAACAATGACACAGTCCTTGAGTGGAGAATTGGCTGAAGGCCAAAGAAAATTGATAGCCCTTGCAACTGCCGGAGCAAATGCTAGTTCCATAAATCCATTGGTCACCCAACTAAGCAATGGACCATTGGTAGCTCTCCACGAGAAGGTTGAGGTTCCTTTGGATCCTACAAAAGAACTGTCGAGATTGATATCTGAAAGGAAATATGATGAAGCTTTCACCACCGCTTTACAGAGAAGTGATGTGACCATTGTCTCTTGGTTATGTTCTCAGGTTGATCTTAGGGCCATCCTGTCAAATCTTGCTTTTAATCAAGGAGTACTGCTGTCTCTTCTGCAACAATTAGCTTGCGACATCAACAAGGATAGATCTCGGAAAATTGCATGGATGACTGATGTGGCTGCTGCCATAAACCCCGCAGACCCAATGATAGCAATGCACATTCGACCGATCTTTGAACAGGTGTATCAGATTTTGAACCATCAACGGAGCCTGCCAACAATCTCTCCTGTCGATCTCTCGGGCATTCGTGTTATCATGCATGTTATCAACTCCATGCTGGTAACTTGTAAATGA 4206 45.51 MFMASPGNPNPNPTNPPFDVQKFFKPTIANPTATSQNPTLMNSPPFPPPSSSYPPPTGPFSYPLQNAPFHHPYHPPHHGNQVPYSQDQFSNLHHQRSLSYPTPPLQPSPPPVNMAVPQNNPAQSSGARIMAMIRAPGSNLEPLPQPPTPLGSLPSPSSAVPEASAPPIMMTTIPMMQGVNPGISPTGPVRMPSSKLPKGRHLIGEHVVYDVDVRLQGEIQPQLEVTPITKYGSDPQLVLGRQIAVNKTYICYGLKQGNIRVLNINTALRSLFRGHEKRVTDMAFFAEDVHLLASVDVGGRVYVWKISEGPDEESKPQIAGKVVISLHMEGGEGEIEVLVVGFGKSVLRIDTTKVGKGESFSAEAPLKFSLEKLIDGVQLVGKHDGEVTELSMCQWMTSRLVSASMDGTIKIWEDRKASPLLVLRPHDGQPVNAATFLTAPNRPDHIILITAGPLNREVKIWSSASEEGWLLPSDAESWKCTQTLELKSSAESQLEEAFFNQIVALSQAGLLLLANAKKNAIYAIHLDYGLNPATTRMDYIAEFTVTMPILSFTGTSEILDRLTHIVQVYCVQTQAIQQYALDLSQCLPPPLDNLGLEKADSNVSQDSASVEGLAALFPSGSKPTEMPFTSSTPRASVLVNGSESAGAERYPASTTSQDATSAANTESKPVTLSPAASNTDIVSAASPPLPLSPRLSRNLSGFRTPVGGFEPIAAVSDHAGDRRGNDYPVNRQIDAIHTNLSEVSSLDDESRNNEEKTSREDLSNVLNPAIVFKHPTHLITPSEILMAVSSSETTNVIEGKSDVETNIQDVVVNNDVEDTELEVKEVGEMKSPQNSEYASRGDPQNLPLENKEKFFCSQASDLGMEVARECCALSSETYVIEEAPQVDANIMDTEVDSEAGEGDRTSVKDVSEKVSESSISITPQIPTPSTKGKKNKGKSSQASGLASPSPSVFNSNESSSEPCGSSSLPPPEATFSSFSAIQDTLNQIMNTQKEMQKQMQMTLAVPVTKEGKRLEAALGRSMEKALKANNDALSARIQEESAKNEKLLRDTTQKITNLVANFVNKDLPTFLEKALKKEMAAIGPAVVRTITPAIEKTISSGIADSFQRGVGDKAVNQLEKSVNSKLEATVARQIQAQFQTSGKQALQDALKSSFEASVIPAFEMSCKTMFEQVDSTFQKGLVEHAAAVQQHLDSSHSSLALALRDSITSASTMTQSLSGELAEGQRKLIALATAGANASSINPLVTQLSNGPLVALHEKVEVPLDPTKELSRLISERKYDEAFTTALQRSDVTIVSWLCSQVDLRAILSNLAFNQGVLLSLLQQLACDINKDRSRKIAWMTDVAAAINPADPMIAMHIRPIFEQVYQILNHQRSLPTISPVDLSGIRVIMHVINSMLVTCK 1401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 13218387 13233649 + MC10g1118 Mch10g1408 678501

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1408 1401 MobiDBLite consensus disorder prediction 140 154 - -
Mch10g1408 1401 MobiDBLite consensus disorder prediction 1 85 - -
Mch10g1408 1401 ProSiteProfiles Trp-Asp (WD) repeats profile. 380 422 IPR001680 GO:0005515(InterPro)
Mch10g1408 1401 MobiDBLite consensus disorder prediction 912 975 - -
Mch10g1408 1401 MobiDBLite consensus disorder prediction 826 847 - -
Mch10g1408 1401 MobiDBLite consensus disorder prediction 897 911 - -
Mch10g1408 1401 Gene3D - 1313 1400 IPR044938 -
Mch10g1408 1401 Pfam WD40 region of Ge1, enhancer of mRNA-decapping protein 380 526 IPR032401 -
Mch10g1408 1401 Pfam WD40 region of Ge1, enhancer of mRNA-decapping protein 225 310 IPR032401 -
Mch10g1408 1401 MobiDBLite consensus disorder prediction 738 760 - -
Mch10g1408 1401 MobiDBLite consensus disorder prediction 641 675 - -
Mch10g1408 1401 FunFam Enhancer of mRNA-decapping protein 4 1313 1399 - -
Mch10g1408 1401 Coils Coil 981 1001 - -
Mch10g1408 1401 SMART WD40_4 416 462 IPR001680 GO:0005515(InterPro)
Mch10g1408 1401 SMART WD40_4 265 305 IPR001680 GO:0005515(InterPro)
Mch10g1408 1401 SMART WD40_4 376 413 IPR001680 GO:0005515(InterPro)
Mch10g1408 1401 MobiDBLite consensus disorder prediction 41 62 - -
Mch10g1408 1401 MobiDBLite consensus disorder prediction 647 675 - -
Mch10g1408 1401 SUPERFAMILY WD40 repeat-like 241 489 IPR036322 GO:0005515(InterPro)
Mch10g1408 1401 Coils Coil 1023 1050 - -
Mch10g1408 1401 PANTHER ENHANCER OF MRNA-DECAPPING PROTEIN 4 41 1401 IPR045152 GO:0000932(PANTHER)|GO:0031087(InterPro)|GO:0031087(PANTHER)
Mch10g1408 1401 Gene3D - 240 546 IPR015943 GO:0005515(InterPro)
Mch10g1408 1401 MobiDBLite consensus disorder prediction 138 161 - -
Mch10g1408 1401 MobiDBLite consensus disorder prediction 895 975 - -
Mch10g1408 1401 Pfam Enhancer of mRNA-decapping protein 4, C-terminal 1271 1371 IPR049404 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1408 K12616 - - csv:101211283 2268.43
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g749 . . . . Bpe09g00103 . Bma10g00607 . . . . . . . . . . . . . . . . . Cla10g00390 Cam10g0390 Cec10g0412 Cco10g0402 Clacu10g0397 Cmu10g1230 Cre10g0645 . . . Cone15ag1288 . Csa03g00397 . Cme06g02727 . Blo10g00884 Bda05g00666 . . . . . Sed08g2886 . . . . . . Cpe14g00796 . Bhi11g00432 Tan01g1873 Cmetu06g2534 . . Mch10g1408 . . . . . . . . . . Chy06g01916 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004211 1 3 2 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 2 43