Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1417 ATGCAGTCTATTAATGCTGTTGAGCAAGAATCAATTTCTGGAAGTTTTCAAGTTCGTACTAGAATGTTCGCTTACAAGAGCGTGAAGATTGTAATCTTCTCAAATAAACTCAACTTCCTTTTGCCTTTTGGTCCTCTAGCCATTCTTGTGGATAAGTTGTCTGGTCATAATAGTTGGGTCTTCTTCCTGAGTCTATTGGGTATCATACCGTTGGCGGAGCGGTTAGGTTATGCCACAGAGCAGCTGGCTTTTTACACTGGACCTACAGTTGGGGGTCTATTAAATGCCACTTTTGGAAATGCGACGGAACTGATTATATCAATTTTTGCACTGAAAAGCCAAATGATACGTGTTGTTCAGCTGTCATTACTAGGTTCAATTCTGTCTAACATGTTGCTGGTGCTTGGTTGTGCATTCTTCTGTGGTGGGATTGTTTTCTGTAAAAAGGAACAGAGTTTTAACAAGGCAACTGCTGTTGTCAACTCAGGATTGTTGTTAATGGCTGTCATGGGCCTGCTTTTTCCTGCTCTTCTCCACTACACGCACAGTGAAGTCCATTTTGGGACGTCGGAATTGGCACTCTCTAGATTCAGCAGCTGCATCATGCTTCTGGCTTATGCTGCTTATCTTTTCTTCCAATTGAAAAGTCAGAAGAATCTTTATTCTTCCATTTACGAGGAAGAAACTCAGAGCGAGGAGAGCTCAGATGAAGATGAAGCTCCTGAGATCTCCAAGTGGGAATCAGTTATCTGGCTATCAATTTTGACCATCTGGATTGCTGTTCTATCAGAATACTTGGTTGATGCGATCGAAGGTGCATCTGTATCCTTGGAAATCCCAGTGTCGTTTATTAGTGTTATACTACTTCCGATTGTGGGGAATGCTGCTGAGCATGCAAGCGCTATTATGTTTGCTATGAAAGATAAGCTTGATATTTCTCTGGGTGTAGCTATCGGATCATCAACTCAGATATCAATGTTTGGGATTCCTTTCTGTGTGGTAACTGGATGGATTATGGGACAACCAATGGACTTGAACTTTAAACTCTTCGAGACGGCGACGCTTTTTATAACTGTAATAGTGGTAGCTTTTTTGCTGCAGGAAGGAACTTCAAATTACTTCAAGGGACTTATGCTTATCCTTTGTTATCTGATAGTCGCAGCTAGTTTTTTCGTGCACGTCGATCCTCCTTCACCCGGTGAG 1203 41.98 MQSINAVEQESISGSFQVRTRMFAYKSVKIVIFSNKLNFLLPFGPLAILVDKLSGHNSWVFFLSLLGIIPLAERLGYATEQLAFYTGPTVGGLLNATFGNATELIISIFALKSQMIRVVQLSLLGSILSNMLLVLGCAFFCGGIVFCKKEQSFNKATAVVNSGLLLMAVMGLLFPALLHYTHSEVHFGTSELALSRFSSCIMLLAYAAYLFFQLKSQKNLYSSIYEEETQSEESSDEDEAPEISKWESVIWLSILTIWIAVLSEYLVDAIEGASVSLEIPVSFISVILLPIVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVTGWIMGQPMDLNFKLFETATLFITVIVVAFLLQEGTSNYFKGLMLILCYLIVAASFFVHVDPPSPGE 401
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 13332115 13336174 + MC10g1122 Mch10g1417 678510
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1417 401 PANTHER VACUOLAR CALCIUM ION TRANSPORTER 22 395 IPR004713 GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER)
Mch10g1417 401 FunFam Vacuolar cation/proton exchanger 88 227 - -
Mch10g1417 401 FunFam Vacuolar cation/proton exchanger 236 392 - -
Mch10g1417 401 Pfam Sodium/calcium exchanger protein 248 390 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Mch10g1417 401 Pfam Sodium/calcium exchanger protein 59 214 IPR004837 GO:0016020(InterPro)|GO:0055085(InterPro)
Mch10g1417 401 Gene3D - 235 392 IPR044880 -
Mch10g1417 401 Gene3D - 88 229 IPR044880 -
Mch10g1417 401 NCBIfam calcium/proton exchanger 40 391 IPR004798 GO:0006816(InterPro)|GO:0015369(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1417 Mch-Chr10:13332115 Mch2g0453 Mch-Chr2:3304559 7.70E-208 dispersed
Mch10g1417 Mch-Chr10:13332115 Mch1g0613 Mch-Chr1:10320444 1.58E-113 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1417 K07300 - csv:101205761 618.231