Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch10g1417 | ATGCAGTCTATTAATGCTGTTGAGCAAGAATCAATTTCTGGAAGTTTTCAAGTTCGTACTAGAATGTTCGCTTACAAGAGCGTGAAGATTGTAATCTTCTCAAATAAACTCAACTTCCTTTTGCCTTTTGGTCCTCTAGCCATTCTTGTGGATAAGTTGTCTGGTCATAATAGTTGGGTCTTCTTCCTGAGTCTATTGGGTATCATACCGTTGGCGGAGCGGTTAGGTTATGCCACAGAGCAGCTGGCTTTTTACACTGGACCTACAGTTGGGGGTCTATTAAATGCCACTTTTGGAAATGCGACGGAACTGATTATATCAATTTTTGCACTGAAAAGCCAAATGATACGTGTTGTTCAGCTGTCATTACTAGGTTCAATTCTGTCTAACATGTTGCTGGTGCTTGGTTGTGCATTCTTCTGTGGTGGGATTGTTTTCTGTAAAAAGGAACAGAGTTTTAACAAGGCAACTGCTGTTGTCAACTCAGGATTGTTGTTAATGGCTGTCATGGGCCTGCTTTTTCCTGCTCTTCTCCACTACACGCACAGTGAAGTCCATTTTGGGACGTCGGAATTGGCACTCTCTAGATTCAGCAGCTGCATCATGCTTCTGGCTTATGCTGCTTATCTTTTCTTCCAATTGAAAAGTCAGAAGAATCTTTATTCTTCCATTTACGAGGAAGAAACTCAGAGCGAGGAGAGCTCAGATGAAGATGAAGCTCCTGAGATCTCCAAGTGGGAATCAGTTATCTGGCTATCAATTTTGACCATCTGGATTGCTGTTCTATCAGAATACTTGGTTGATGCGATCGAAGGTGCATCTGTATCCTTGGAAATCCCAGTGTCGTTTATTAGTGTTATACTACTTCCGATTGTGGGGAATGCTGCTGAGCATGCAAGCGCTATTATGTTTGCTATGAAAGATAAGCTTGATATTTCTCTGGGTGTAGCTATCGGATCATCAACTCAGATATCAATGTTTGGGATTCCTTTCTGTGTGGTAACTGGATGGATTATGGGACAACCAATGGACTTGAACTTTAAACTCTTCGAGACGGCGACGCTTTTTATAACTGTAATAGTGGTAGCTTTTTTGCTGCAGGAAGGAACTTCAAATTACTTCAAGGGACTTATGCTTATCCTTTGTTATCTGATAGTCGCAGCTAGTTTTTTCGTGCACGTCGATCCTCCTTCACCCGGTGAG | 1203 | 41.98 | MQSINAVEQESISGSFQVRTRMFAYKSVKIVIFSNKLNFLLPFGPLAILVDKLSGHNSWVFFLSLLGIIPLAERLGYATEQLAFYTGPTVGGLLNATFGNATELIISIFALKSQMIRVVQLSLLGSILSNMLLVLGCAFFCGGIVFCKKEQSFNKATAVVNSGLLLMAVMGLLFPALLHYTHSEVHFGTSELALSRFSSCIMLLAYAAYLFFQLKSQKNLYSSIYEEETQSEESSDEDEAPEISKWESVIWLSILTIWIAVLSEYLVDAIEGASVSLEIPVSFISVILLPIVGNAAEHASAIMFAMKDKLDISLGVAIGSSTQISMFGIPFCVVTGWIMGQPMDLNFKLFETATLFITVIVVAFLLQEGTSNYFKGLMLILCYLIVAASFFVHVDPPSPGE | 401 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 13332115 | 13336174 | + | MC10g1122 | Mch10g1417 | 678510 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch10g1417 | 401 | PANTHER | VACUOLAR CALCIUM ION TRANSPORTER | 22 | 395 | IPR004713 | GO:0006812(InterPro)|GO:0006874(PANTHER)|GO:0008324(InterPro)|GO:0009705(PANTHER)|GO:0015369(PANTHER)|GO:0016020(InterPro)|GO:0070588(PANTHER) | |
Mch10g1417 | 401 | FunFam | Vacuolar cation/proton exchanger | 88 | 227 | - | - | |
Mch10g1417 | 401 | FunFam | Vacuolar cation/proton exchanger | 236 | 392 | - | - | |
Mch10g1417 | 401 | Pfam | Sodium/calcium exchanger protein | 248 | 390 | IPR004837 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch10g1417 | 401 | Pfam | Sodium/calcium exchanger protein | 59 | 214 | IPR004837 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch10g1417 | 401 | Gene3D | - | 235 | 392 | IPR044880 | - | |
Mch10g1417 | 401 | Gene3D | - | 88 | 229 | IPR044880 | - | |
Mch10g1417 | 401 | NCBIfam | calcium/proton exchanger | 40 | 391 | IPR004798 | GO:0006816(InterPro)|GO:0015369(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch10g1417 | Mch-Chr10:13332115 | Mch2g0453 | Mch-Chr2:3304559 | 7.70E-208 | dispersed | |
Mch10g1417 | Mch-Chr10:13332115 | Mch1g0613 | Mch-Chr1:10320444 | 1.58E-113 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch10g1417 | K07300 | - | csv:101205761 | 618.231 |