Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1442 ATGTTGCTGACCACAAACAAGCCATCCGCCAACAACCACCACCACCACTTAAACGGCCAAAACGCCACCACCACCACCAACTCCTCTGCTGCTGCCGCCCCGACCCTGGCCCCGGCCGCTGCTGCCAACAACAACGAGCAGCAGTGCGTCGTGCGGGAGCAAGACCAATACATGCCGATCGCCAACGTGATACGCATCATGCGGCGGATCTTACCCTCCCATGCAAAGATATCCGACGATGCCAAGGAGACCATCCAAGAGTGTGTGTCGGAGTACATTAGCTTCATCACCGGCGAGGCCAACGAGCGGTGCCAGCGAGAGCAGCGCAAGACGGTGACGGCGGAGGACGTCCTTTGGGCCATGGGGAAGCTTGGCTTCGACGACTACATCGAGCCACTCACCGTGTTCCTCAACCGCTACCGGGAGTCAGAGAGCGATCGAATCCGAACGGAGCCAATCTTGAGGCGCAGTATGGATTATGGGCCGCAAGTGGGGATGCTACCGCCGTACGGGCAGGCGTTTCAAATAGGGCACGTGCCAGCGGGGATGTTCGATGCAATGGGCGGGTACTATAGTGGTGGCGGTGGCGGTAGTGGTGGTGGAGGCGGAAGTGGAGGCGGGAGCGGCGGGTCGAGCTCTGGGAACGGTAGCCAGCTT 657 60.73 MLLTTNKPSANNHHHHLNGQNATTTTNSSAAAAPTLAPAAAANNNEQQCVVREQDQYMPIANVIRIMRRILPSHAKISDDAKETIQECVSEYISFITGEANERCQREQRKTVTAEDVLWAMGKLGFDDYIEPLTVFLNRYRESESDRIRTEPILRRSMDYGPQVGMLPPYGQAFQIGHVPAGMFDAMGGYYSGGGGGSGGGGGSGGGSGGSSSGNGSQL 219
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 13919189 13919845 - MC10g1140 Mch10g1442 678535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1442 219 PRINTS CCAAT-binding transcription factor subunit A signature 85 103 - -
Mch10g1442 219 PRINTS CCAAT-binding transcription factor subunit A signature 104 122 - -
Mch10g1442 219 PRINTS CCAAT-binding transcription factor subunit A signature 123 141 - -
Mch10g1442 219 MobiDBLite consensus disorder prediction 1 31 - -
Mch10g1442 219 SUPERFAMILY Histone-fold 54 147 IPR009072 GO:0046982(InterPro)
Mch10g1442 219 MobiDBLite consensus disorder prediction 195 219 - -
Mch10g1442 219 ProSitePatterns NF-YB/HAP3 subunit signature. 88 104 IPR003956 GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch10g1442 219 FunFam Nuclear transcription factor Y subunit B-6 46 158 - -
Mch10g1442 219 PANTHER CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED 41 147 IPR027113 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(PANTHER)|GO:0016602(InterPro)
Mch10g1442 219 Gene3D Histone, subunit A 43 158 IPR009072 GO:0046982(InterPro)
Mch10g1442 219 MobiDBLite consensus disorder prediction 205 219 - -
Mch10g1442 219 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 58 121 IPR003958 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1442 Mch-Chr10:13919189 Mch2g0464 Mch-Chr2:3371249 1.30E-41 dispersed
Mch10g1442 Mch-Chr10:13919189 Mch9g0769 Mch-Chr9:5755501 5.90E-39 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42506 PF00808 CBFD_NFYB_HMF 2.60E-25 CL0012 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1442 K08065 - csv:116402762 298.13