Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1468 ATGGCGTCTTCTAGGTCCCCCAATGGATCCTCTGACGATATCGTCGATACCACCCCGTTGATGGGGAATCCCAACCGCTCGCCGGACGATACGCATTCGGGTCGTCGATTTGTGCAGAGGCAAAGTCTGCGTCAGGCCGCTAGGTTTCTGAGGCAGGCTAGTAGTCGTAGGACGATGCGTGAGCCGTCCATGTTGGTCCGGGAGACGGCTGCGGAGCAATTGGAGGAGAGGCAGAGCGATTGGGCGTATTCCAAGCCGGTTGTGATTCTTGACATCGTGTGGAATTTCGCTTTTGTTGTTGTTGCTGCTGCCATCTTGGTTATGAGCCGCAACGAGTCTCCTACAATGCCTTTGAGGCTCTGGGTTGTGGGCTATGCGTTCCAATGCGTTCTCCATATGGTGTGTGTTTGTGTTGAGTATCGTCGGCGTCGGCAACGCCGCTATTCGGCCTACAATTCGATGGAAGAAGGAAATTCCGCCCGCGGGCTTCCTGGTTTGGGTTCGAGAGGAAACTCGAGTCACTATGTGTCATTGGCACAACTGGATGATACCGATACCAGTGTAGCAAAGCACCTTGAATCTGCAAATACAATGTTTTCCTTCATCTGGTGGATTATTGGATTCTACTGGGTATCTGCAGGAGGTCAATCTTTAGCACACATCTCCCCTCTGCTCTACTGGTTATGTATCATATTCTTGGGTTTTGATGTGTTCTTTGTGGTTTTCTGTGTTGCTTTGGCATGTATCATTGGAATTGCTGTTTGCTGCTGTCTTCCCTGTATCATTGCACTTTTATATGCTGTAGCAGATCAGGAAGGTGCAACCAAAGAAGATGTCGAACAGTTGTCAAAATTTAAATTCAGAAAGGTCGACGATGCCGAGAAATTCTCCACTGATGTACAGGGACCTCTTGGCGGGATAATGACTGAGTGTGGTACAGATTCACCAATTGAACGGGCTCTTTCACAGGAGGATGCGGAGTGCTGCATCTGCCTATCTGCATATGATGATGGCGTCGAGCTCCGAGAGCTCCCATGTGGTCACCACTTCCACTGCGCCTGCGTCGATAAGTGGCTGTATATTAACGCTACCTGTCCCCTCTGCAAGTACAACATCTTGAAAAGTAGTAACCTTGCTCAAGAGGAAGTTTAG 1152 49.57 MASSRSPNGSSDDIVDTTPLMGNPNRSPDDTHSGRRFVQRQSLRQAARFLRQASSRRTMREPSMLVRETAAEQLEERQSDWAYSKPVVILDIVWNFAFVVVAAAILVMSRNESPTMPLRLWVVGYAFQCVLHMVCVCVEYRRRRQRRYSAYNSMEEGNSARGLPGLGSRGNSSHYVSLAQLDDTDTSVAKHLESANTMFSFIWWIIGFYWVSAGGQSLAHISPLLYWLCIIFLGFDVFFVVFCVALACIIGIAVCCCLPCIIALLYAVADQEGATKEDVEQLSKFKFRKVDDAEKFSTDVQGPLGGIMTECGTDSPIERALSQEDAECCICLSAYDDGVELRELPCGHHFHCACVDKWLYINATCPLCKYNILKSSNLAQEEV 383
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14614738 14631422 - MC10g1158 Mch10g1468 678561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1468 383 FunFam E3 ubiquitin-protein ligase At1g12760 314 379 - -
Mch10g1468 383 SMART ring_2 328 368 IPR001841 -
Mch10g1468 383 CDD RING-H2_RNF6-like 327 369 - -
Mch10g1468 383 ProSiteProfiles Zinc finger RING-type profile. 328 369 IPR001841 -
Mch10g1468 383 SUPERFAMILY RING/U-box 319 375 - -
Mch10g1468 383 PANTHER TARGET OF ERK KINASE MPK-1 42 373 - GO:0000325(PANTHER)|GO:0006511(PANTHER)|GO:0016567(PANTHER)|GO:0061630(PANTHER)
Mch10g1468 383 MobiDBLite consensus disorder prediction 1 28 - -
Mch10g1468 383 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 313 376 IPR013083 -
Mch10g1468 383 MobiDBLite consensus disorder prediction 1 35 - -
Mch10g1468 383 Pfam Ring finger domain 327 369 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1468 Mch-Chr10:14614738 Mch5g0362 Mch-Chr5:2480601 4.30E-154 dispersed
Mch10g1468 Mch-Chr10:14614738 Mch5g1335 Mch-Chr5:14304949 5.85E-81 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1468 - - - 0.0