Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch10g1470 | TTTCATAAAAAAAACCAAGCAGAGGGCGCGAAGCGGAAGGTCTTAGTTTTTCCTGAGCTTGTTCTTCTCTACTTGGAGCAGCCCCCATTCCATTCAACTGTTCAATCCCCTTTCCATACGAATAATTCTATGGCGTCTTCTTCTTCTGGCAACAGCAGCAGCTACGACATGCCATGGGTGGAGAAGTTCAGACCCACCAAGGTCGCCGACATTGTGGGCAATGAAGATGCAGTTTCAAGGCTCCAAGTTATCGCTCGTGATGGCAACATGCCCAATCTCATATTATCTGGTCCCCCAGGAACTGGGAAGACAACGAGTATTCTGGCTCTTGCACACGAGCTCTTGGGACCAAATTACAAAGAGGGTGTTCTGGAGCTTAATGCATCAGATGATAGGGGAATAGATGTTGTGAGGAACAAAATCAAGATGTTTGCCCAAAAGAAAGTAACTTTACCTCCTGGTCGTCACAAAGTGGTAATATTGGATGAAGCTGACAGCATGACAACTGGAGCACAACAAGCCTTGAGGCGAACGATGGAAATATACTCAAACACAACTCGTTTTGCCCTTGCATGTAATACCTCTTCAAAAATTATTGAGCCTATTCAGAGTAGATGTGCGATTGTCCGATTTTCAAGATTAACAGATCAAGAGATTCTCGGTCGCCTCATGGTGGTGCTTCAAGCAGAAAAGGTACCCTATGTTCCAGAAGGTCTGGAAGCAATCATTTTCACTGCTGATGGTGATATGAGGCAGGCATTGAATAATTTGCAAGCTACATACAGCGGGTTCCGCTTTGTAAACCAAGACAATGTTTTCAAGGTTTGTGATCAACCTCATCCGCTGCATGTGAAGAATGTTGTGCGTAATGTGCTTGAAGGTAAATTCGATGATGCTTGTGCGGGTTTGAAGCAACTCTACGACTTGGGCTATTCTCCAACTGACATAATAACCACCCTCTTCCGTATCATTAAGAACTATGATATGGCCGAATATCTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCCCATATGAGAATATGTGATGGAGTTGGTTCTTACCTTCAGCTATGCGGTCTTTTGGCCAAGCTTTCGATGGTTCGCGAGACGGCTAAAGCACCATGA | 1128 | 44.59 | FHKKNQAEGAKRKVLVFPELVLLYLEQPPFHSTVQSPFHTNNSMASSSSGNSSSYDMPWVEKFRPTKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSMVRETAKAP | 375 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 14646508 | 14653968 | + | MC10g1159 | Mch10g1470 | 678563 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch10g1470 | 375 | Gene3D | - | 279 | 371 | - | - | |
Mch10g1470 | 375 | FunFam | replication factor C subunit 2 | 279 | 371 | - | - | |
Mch10g1470 | 375 | Pfam | Replication factor C C-terminal domain | 279 | 364 | IPR013748 | - | |
Mch10g1470 | 375 | SUPERFAMILY | post-AAA+ oligomerization domain-like | 278 | 369 | IPR008921 | GO:0003677(InterPro)|GO:0006260(InterPro) | |
Mch10g1470 | 375 | Gene3D | - | 215 | 278 | - | - | |
Mch10g1470 | 375 | Pfam | ATPase family associated with various cellular activities (AAA) | 93 | 211 | IPR003959 | GO:0005524(InterPro)|GO:0016887(InterPro) | |
Mch10g1470 | 375 | CDD | AAA | 72 | 209 | - | - | |
Mch10g1470 | 375 | SMART | AAA_5 | 89 | 221 | IPR003593 | GO:0016887(InterPro) | |
Mch10g1470 | 375 | Gene3D | - | 51 | 214 | IPR027417 | - | |
Mch10g1470 | 375 | PANTHER | REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT | 57 | 368 | IPR050238 | GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER) | |
Mch10g1470 | 375 | FunFam | Replication factor C subunit 4 | 51 | 214 | - | - | |
Mch10g1470 | 375 | CDD | HLD_clamp_RFC | 214 | 276 | IPR047854 | - | |
Mch10g1470 | 375 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 55 | 277 | IPR027417 | - | |
Mch10g1470 | 375 | FunFam | Replication factor C subunit 4 | 215 | 278 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch10g1470 | Mch-Chr10:14646508 | Mch4g1788 | Mch-Chr4:20812937 | 1.50E-65 | dispersed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch10g1470 | K10755 | - | csv:101208984 | 638.262 |