Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1470 TTTCATAAAAAAAACCAAGCAGAGGGCGCGAAGCGGAAGGTCTTAGTTTTTCCTGAGCTTGTTCTTCTCTACTTGGAGCAGCCCCCATTCCATTCAACTGTTCAATCCCCTTTCCATACGAATAATTCTATGGCGTCTTCTTCTTCTGGCAACAGCAGCAGCTACGACATGCCATGGGTGGAGAAGTTCAGACCCACCAAGGTCGCCGACATTGTGGGCAATGAAGATGCAGTTTCAAGGCTCCAAGTTATCGCTCGTGATGGCAACATGCCCAATCTCATATTATCTGGTCCCCCAGGAACTGGGAAGACAACGAGTATTCTGGCTCTTGCACACGAGCTCTTGGGACCAAATTACAAAGAGGGTGTTCTGGAGCTTAATGCATCAGATGATAGGGGAATAGATGTTGTGAGGAACAAAATCAAGATGTTTGCCCAAAAGAAAGTAACTTTACCTCCTGGTCGTCACAAAGTGGTAATATTGGATGAAGCTGACAGCATGACAACTGGAGCACAACAAGCCTTGAGGCGAACGATGGAAATATACTCAAACACAACTCGTTTTGCCCTTGCATGTAATACCTCTTCAAAAATTATTGAGCCTATTCAGAGTAGATGTGCGATTGTCCGATTTTCAAGATTAACAGATCAAGAGATTCTCGGTCGCCTCATGGTGGTGCTTCAAGCAGAAAAGGTACCCTATGTTCCAGAAGGTCTGGAAGCAATCATTTTCACTGCTGATGGTGATATGAGGCAGGCATTGAATAATTTGCAAGCTACATACAGCGGGTTCCGCTTTGTAAACCAAGACAATGTTTTCAAGGTTTGTGATCAACCTCATCCGCTGCATGTGAAGAATGTTGTGCGTAATGTGCTTGAAGGTAAATTCGATGATGCTTGTGCGGGTTTGAAGCAACTCTACGACTTGGGCTATTCTCCAACTGACATAATAACCACCCTCTTCCGTATCATTAAGAACTATGATATGGCCGAATATCTGAAACTGGAATTCATGAAGGAAACTGGGTTTGCCCATATGAGAATATGTGATGGAGTTGGTTCTTACCTTCAGCTATGCGGTCTTTTGGCCAAGCTTTCGATGGTTCGCGAGACGGCTAAAGCACCATGA 1128 44.59 FHKKNQAEGAKRKVLVFPELVLLYLEQPPFHSTVQSPFHTNNSMASSSSGNSSSYDMPWVEKFRPTKVADIVGNEDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELLGPNYKEGVLELNASDDRGIDVVRNKIKMFAQKKVTLPPGRHKVVILDEADSMTTGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQSRCAIVRFSRLTDQEILGRLMVVLQAEKVPYVPEGLEAIIFTADGDMRQALNNLQATYSGFRFVNQDNVFKVCDQPHPLHVKNVVRNVLEGKFDDACAGLKQLYDLGYSPTDIITTLFRIIKNYDMAEYLKLEFMKETGFAHMRICDGVGSYLQLCGLLAKLSMVRETAKAP 375
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14646508 14653968 + MC10g1159 Mch10g1470 678563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1470 375 Gene3D - 279 371 - -
Mch10g1470 375 FunFam replication factor C subunit 2 279 371 - -
Mch10g1470 375 Pfam Replication factor C C-terminal domain 279 364 IPR013748 -
Mch10g1470 375 SUPERFAMILY post-AAA+ oligomerization domain-like 278 369 IPR008921 GO:0003677(InterPro)|GO:0006260(InterPro)
Mch10g1470 375 Gene3D - 215 278 - -
Mch10g1470 375 Pfam ATPase family associated with various cellular activities (AAA) 93 211 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
Mch10g1470 375 CDD AAA 72 209 - -
Mch10g1470 375 SMART AAA_5 89 221 IPR003593 GO:0016887(InterPro)
Mch10g1470 375 Gene3D - 51 214 IPR027417 -
Mch10g1470 375 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 57 368 IPR050238 GO:0003689(PANTHER)|GO:0005634(PANTHER)|GO:0005663(PANTHER)|GO:0006261(PANTHER)|GO:0006281(PANTHER)
Mch10g1470 375 FunFam Replication factor C subunit 4 51 214 - -
Mch10g1470 375 CDD HLD_clamp_RFC 214 276 IPR047854 -
Mch10g1470 375 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 55 277 IPR027417 -
Mch10g1470 375 FunFam Replication factor C subunit 4 215 278 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1470 Mch-Chr10:14646508 Mch4g1788 Mch-Chr4:20812937 1.50E-65 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1470 K10755 - csv:101208984 638.262