Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1475 ATGGCTTTCCACTTCCCTCGTCGGAGCTTCGTCTTCGTTGTCTTTTTCTTGTCGTTTACGATGTCGGGGATGACCACGAAACCGGTGCTCGCCATCTTTCAAGCAAGCCCTTGGAAGCTCGCCCATGCCACCTTCTATGGCGATGAGACAGCATCTGAAACAATGGGAGGAGCATGTGGGTATGGAAACTTGTTCACGAACGGCTACGGCGTGGCCACGGCGGCGCTGAGCTCCACACTCTTCATCAACGGCTACGCTTGTGGAGCATGCTTTCAAATCAAATGCATGCAATCCAAAGCATGCTACGCCAATGTTCCCTACACCACCGTGACGGCCACCAACCTCTGCCCTCCCAATTGGGCGAAGCCGTCCGACAACGGCGGTTGGTGCAATCCTCCGAGAGTTCACTTCGACATGTCGAAACCCGCCTTCATGAAGATCGCCAACTGGAAGGCTGGCATTGTCCCCGTCACATACCGACGGGTGGCTTGCGGTCGACAGGGTGGCCTTCGGTTCACGTTCCAAGGAAACGGGTACTGGCTTTTGGTGTACGTGATGAACGTCGGCGGCGGAGGCGACGTGTCGGGGATGTGGGTGAAAGGGAGCAAGATGGGGTGGATCAAGATGAGCCATAATTGGGGAGCTTCGTATCAAGCTTTTTCAACTTTGGTTGGCCAAACTCTCTCTTTTAGAGTCACTTCTTACACAACCAAAGAGACAATCACGGCTTGGAATGTTGCCCCTTCTAGTTGGAGGTTTGGATTGACCTACAAAACCAATGTCAACTTTCGT 792 53.41 MAFHFPRRSFVFVVFFLSFTMSGMTTKPVLAIFQASPWKLAHATFYGDETASETMGGACGYGNLFTNGYGVATAALSSTLFINGYACGACFQIKCMQSKACYANVPYTTVTATNLCPPNWAKPSDNGGWCNPPRVHFDMSKPAFMKIANWKAGIVPVTYRRVACGRQGGLRFTFQGNGYWLLVYVMNVGGGGDVSGMWVKGSKMGWIKMSHNWGASYQAFSTLVGQTLSFRVTSYTTKETITAWNVAPSSWRFGLTYKTNVNFR 264
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14704034 14705758 + MC10g1162 Mch10g1475 678568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1475 264 Pfam Expansin C-terminal domain 171 248 IPR007117 -
Mch10g1475 264 Pfam Lytic transglycolase 73 159 IPR009009 -
Mch10g1475 264 CDD DPBB_EXPA_N 37 164 - -
Mch10g1475 264 Gene3D - 24 164 IPR036908 -
Mch10g1475 264 SUPERFAMILY Barwin-like endoglucanases 30 187 IPR036908 -
Mch10g1475 264 Gene3D - 169 264 IPR036749 -
Mch10g1475 264 PRINTS Expansin signature 144 157 IPR002963 GO:0009664(InterPro)
Mch10g1475 264 PRINTS Expansin signature 168 180 IPR002963 GO:0009664(InterPro)
Mch10g1475 264 PRINTS Expansin signature 108 118 IPR002963 GO:0009664(InterPro)
Mch10g1475 264 PRINTS Expansin signature 245 261 IPR002963 GO:0009664(InterPro)
Mch10g1475 264 PRINTS Expansin signature 127 144 IPR002963 GO:0009664(InterPro)
Mch10g1475 264 PRINTS Expansin signature 180 201 IPR002963 GO:0009664(InterPro)
Mch10g1475 264 PRINTS Expansin signature 68 82 IPR002963 GO:0009664(InterPro)
Mch10g1475 264 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 56 169 IPR007112 -
Mch10g1475 264 SUPERFAMILY PHL pollen allergen 166 258 IPR036749 -
Mch10g1475 264 PRINTS Expansin/Lol pI family signature 55 73 IPR007118 GO:0005576(InterPro)
Mch10g1475 264 PRINTS Expansin/Lol pI family signature 206 220 IPR007118 GO:0005576(InterPro)
Mch10g1475 264 PRINTS Expansin/Lol pI family signature 37 52 IPR007118 GO:0005576(InterPro)
Mch10g1475 264 PRINTS Expansin/Lol pI family signature 152 168 IPR007118 GO:0005576(InterPro)
Mch10g1475 264 PRINTS Expansin/Lol pI family signature 77 95 IPR007118 GO:0005576(InterPro)
Mch10g1475 264 PRINTS Expansin/Lol pI family signature 245 259 IPR007118 GO:0005576(InterPro)
Mch10g1475 264 PANTHER EXPANSIN-A15 13 259 IPR002963 GO:0009664(InterPro)
Mch10g1475 264 SMART dpbb_1 73 159 IPR007112 -
Mch10g1475 264 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 179 259 IPR007117 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1475 Mch-Chr10:14704034 Mch6g2561 Mch-Chr6:27464216 1.04E-143 dispersed
Mch10g1475 Mch-Chr10:14704034 Mch1g0714 Mch-Chr1:11069378 3.38E-97 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1475 - - - 0.0