Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1493 AACTCCAGCTTGGCTGGAATCTTATCCCCTGCCTTGTCCGGATTGAAGTCTCTGAGAACTTTGACATTATATGGAAATAGATTTACTGGTAATATTCCGATTGAATATGCTGCCATTCTTACACTGTGGAAGCTGAACTTGAGCTCCAATGCTCTGTCTGGTTCGGTCCCGGAGTTCATCGGCGATTTGCCGAGCATTCGGTTTCTGGATTTGTCTAGAAATAGCTTCACTGGGGAGATTCCTTCCGCTTTGTTCAAGAATTGTGGTAAAACTAGATTTGTTTCATTTTCTCACAACAGATTTTCAGGTGTGATACCGTCAACAATTTTGAACTGTTTGAGTCTTGAAGGATTTGATTTCTCAAACAATGATCTAAGTGGGAGCATCCCTTTGCAACTTTGTAATAAGATTCAAAGATTAGAGTATGTTTCTGTGAGAAGCAATGCACTGACTGGGAGTGTTCAAGGGCAGTTCTCAGCTTGCCAGAGCTTGAAACTTTTGGATCTGAGTAGCAACTCGTTCGCTGGGTCGCCACCGTTCGAGGTTCTCGGGTTTAAGAACGCCACTTATTTTAACGTCTCGTATAACGGGTTTAATGGGGGAATTGGAGAGGTTGTGGCTTGTGGTGATAAACTGGAAGTTGTTGATGTTTCAGGGAATGGCTTGGATGGGGAGATCCCATTGAGCATTTCAAAATGTGGGAGTCTTAAGATCTTGGATTTGGAAAATAACAATCTCAGTGGGGAGATTCCTGTTGAACTTGCAGCTTTGAAAGAGCTTTTGGTGATTCGGTTGGGTAATAATTCGATCACCGGGACGGTTCCAGCTGCTTTCGGGAACATTGAGCTGCTTCAGGTTTTGAATTTGCATAAACTCAAACTTGTTGGGGGAATTCCTAAATCTCTTAACAATATGACATACCTTGAAATTCTTGATCTACATGATAACCGTCTGAACGGAAGCATTCCATCGACGCTTGGGAGCCTGTCGAAACTCCAGTTTCTTAATCTATCTCATAACCTGCTGTCTGGTTCAATACCACCTACTTTTGAAAATCTGACAATGCTGAACCATTTCAATGTCTCTTTCAATAACCTTTCGGGCGCTATACCTCCCGTGAAGAAGATCCAAGATTTCGGGCCTTCTGCATTCTCAAACAATCCTCTGCTCTGTGGTGCTCCCTTGGATCCTTGCTCTGGAAACAACACCACTGACACGACTTCTGCATTGAAGAAGTCAAAGGTTCTTAGTCCATCTGCAATCATCGCAATCGTAGCAGCAGTTGTGATCCTGGTTGGGGTTTGCGTGATATCCATCTTGAACCTAATGGCTCGGACGAGGAAGGCGAGGAGTACCGAAATCATTGAGAGCACACCACTGGGTTCAACCGAGTCAGGTGTCATAATTGGGAAACTGGTTCTGTTTAGCAAAACTTTGCCATCGAAGTATGAAGACTGGGAGGCTGGCACGAAAGCTTTGCTCGACAAGGAATGTCTAATTGGGGGTGGCTCAATCGGCACCGTCTACAAGACGAGTTTCGAAGGCGGAATCTCCATCGCCGTGAAGAAGCTGGAGACTCTAGGGAGGATCAGAAGCCAAGATGAGTTCGAGACCGAAATCGGACGTTTGGGAAACATTAAACACCGGAACTTAGTCGCATTTCAGGGGTACTATTGGTCCTCATCAATGCAGTTGATTCTATCCGAATTTGTCTCGAACGGCAATCTGTACGACAATCTACATGGTCTGAGTTTTCCAGGTACCAGCACAGGCATTGGCAATACAGAGTTACATTGGTCTAGGAGATACCAAATTGCACTTGGAACAGCTAGAGCTCTTGCTTATCTTCACCATGATTGCAGGCCTCCAATTCTTCACCTCAACATGAAATCAACTAACATACTGTTAGACGAAAACTACGAAGCCAAGTTATCCGATTACGGGTTGGGGAAGTTGCTTCCCGTTTTGGACAATTACGTCTTAACCAAGTACCATACTGCTGTAGGCTACGTCGCACCAGAGTTGGCGCAGAGTTTGAGAGTTAGTGAAAAATGCGACGTCTATAGTTTCGGAGTGATTCTACTAGAGTTGGTAACAGGAAGGAAGCCAGTTGAGAGTCCTAGAGCAAACCAGGTAGTGATCTTGTGTGAATATGTAAGGGAGTTATTGGAAAGGGGTTCTGCCTCGGACTGTTTCGACCGAAACTTGCGTGGCATTGCTGAAAACGAGCTCATTCAAGTGATGAAGTTGGGGTTGATTTGTACATCTGAGATCCCTTCGAAGAGACCGAGCATGGCTGAGGTTGTTCAAGTTCTCGAGTCGATAAGAAAT 2331 44.79 NSSLAGILSPALSGLKSLRTLTLYGNRFTGNIPIEYAAILTLWKLNLSSNALSGSVPEFIGDLPSIRFLDLSRNSFTGEIPSALFKNCGKTRFVSFSHNRFSGVIPSTILNCLSLEGFDFSNNDLSGSIPLQLCNKIQRLEYVSVRSNALTGSVQGQFSACQSLKLLDLSSNSFAGSPPFEVLGFKNATYFNVSYNGFNGGIGEVVACGDKLEVVDVSGNGLDGEIPLSISKCGSLKILDLENNNLSGEIPVELAALKELLVIRLGNNSITGTVPAAFGNIELLQVLNLHKLKLVGGIPKSLNNMTYLEILDLHDNRLNGSIPSTLGSLSKLQFLNLSHNLLSGSIPPTFENLTMLNHFNVSFNNLSGAIPPVKKIQDFGPSAFSNNPLLCGAPLDPCSGNNTTDTTSALKKSKVLSPSAIIAIVAAVVILVGVCVISILNLMARTRKARSTEIIESTPLGSTESGVIIGKLVLFSKTLPSKYEDWEAGTKALLDKECLIGGGSIGTVYKTSFEGGISIAVKKLETLGRIRSQDEFETEIGRLGNIKHRNLVAFQGYYWSSSMQLILSEFVSNGNLYDNLHGLSFPGTSTGIGNTELHWSRRYQIALGTARALAYLHHDCRPPILHLNMKSTNILLDENYEAKLSDYGLGKLLPVLDNYVLTKYHTAVGYVAPELAQSLRVSEKCDVYSFGVILLELVTGRKPVESPRANQVVILCEYVRELLERGSASDCFDRNLRGIAENELIQVMKLGLICTSEIPSKRPSMAEVVQVLESIRN 777
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14889416 14891916 - MC10g1178 Mch10g1493 678586
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1493 777 Pfam Protein tyrosine and serine/threonine kinase 498 772 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch10g1493 777 FunFam probable LRR receptor-like serine/threonine-protein kinase IRK 571 777 - -
Mch10g1493 777 Gene3D Phosphorylase Kinase; domain 1 469 570 - -
Mch10g1493 777 FunFam Putative LRR receptor-like serine/threonine-protein kinase 471 570 - -
Mch10g1493 777 CDD STKc_IRAK 500 775 - -
Mch10g1493 777 SMART LRR_typ_2 305 328 IPR003591 -
Mch10g1493 777 SMART LRR_typ_2 257 280 IPR003591 -
Mch10g1493 777 SMART LRR_typ_2 63 87 IPR003591 -
Mch10g1493 777 SMART LRR_typ_2 329 352 IPR003591 -
Mch10g1493 777 ProSiteProfiles Protein kinase domain profile. 494 775 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g1493 777 SUPERFAMILY Protein kinase-like (PK-like) 495 773 IPR011009 -
Mch10g1493 777 ProSiteProfiles Leucine-rich repeat profile. 331 354 IPR001611 GO:0005515(InterPro)
Mch10g1493 777 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 1 207 - -
Mch10g1493 777 Gene3D Ribonuclease Inhibitor 136 407 IPR032675 -
Mch10g1493 777 Gene3D Ribonuclease Inhibitor 1 135 IPR032675 -
Mch10g1493 777 PANTHER RECEPTOR-LIKE PROTEIN 55 136 773 - -
Mch10g1493 777 Pfam Leucine rich repeat 307 366 IPR001611 GO:0005515(InterPro)
Mch10g1493 777 SUPERFAMILY L domain-like 137 397 - -
Mch10g1493 777 Gene3D Transferase(Phosphotransferase) domain 1 571 777 - -
Mch10g1493 777 SUPERFAMILY L domain-like 2 200 - -
Mch10g1493 777 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 208 402 - -
Mch10g1493 777 Pfam Leucine Rich Repeat 42 63 IPR001611 GO:0005515(InterPro)
Mch10g1493 777 Pfam Leucine Rich Repeat 114 135 IPR001611 GO:0005515(InterPro)
Mch10g1493 777 Pfam Leucine Rich Repeat 211 233 IPR001611 GO:0005515(InterPro)
Mch10g1493 777 Pfam Leucine Rich Repeat 65 85 IPR001611 GO:0005515(InterPro)
Mch10g1493 777 Pfam Leucine Rich Repeat 235 256 IPR001611 GO:0005515(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1493 Mch-Chr10:14889416 Mch5g0924 Mch-Chr5:6839872 2.08E-92 dispersed
Mch10g1493 Mch-Chr10:14889416 Mch4g2458 Mch-Chr4:25472963 2.53E-91 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77027 PF00069 Pkinase 1.10E-34 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1493 - - - 0.0