Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1504 ATGGAGGGAGGAGAAGGCGATGCCGGAAGTGGGGCTGCGGCGGCCCGATCAGATACTCCGATGGTGGGGACGGCGGCTCCGGCGCCGGAAGTGGGCGGTCAGGTGGGTGCGGCGGCGGTGGGGAAGAAGAAGAGGGGGAGGCCGAGGAAGTATGGGCCGGATGGGAAGTTGAATGTGGCGGCGCTGTCGCCGAAGCCGATATCGGCGTCGGCGCCGGCACAGGCGGCGGCGGTGATTGATTTCGCGGCGGAGAGACGAGGGAGAATCCGGCCGGCGGGATTGCTGAGCAAAACCAAGTTCGAAATGGAGAATTTAGGTGAATGGGTAGCTTGTTCTGTTGGTGCAAATTTCACTCCCCATATCATCACTGTCAATACCGGTGAGGACGTTACAATGAAAGTTCTCTCCTTTTCTCAACAAGGGCCACGAGCCATCTGCATTCTCTCCGCGAACGGCATAATTTCGAGCGTCACGCTTCGTCAACCCGATTCCTCTGGAGGAACATTAACATATGAGGTCGGTCGTTTCGAGATATTGTCATTGTCGGGATCGTTCATGCCGAACGATCGTGCGGGAACCAAGAGTAGATCCGGTGGGATGAGTGTTTCTTTAGCGAGTCCCGACGGGCGCATCGTTGGTGGTGGAGTTGCTGGTTTGTTAGTAGCTGCAACTCCTATTCAAGTGGTAGTAGGAAGCTTCTTGTCTGGGAACCAACATGAGCAAAAGCCAAAGAAACCGAAACAGGACGTCATATTACCGGTTTCTGCTCTCCCAATCTCCAGTGCTGAACCCAAATCATACACGACGACAACAACGACAACAACACCGACAACAACGTCTTCGTTTCGTGCCGAGACTTGGTCCCCTTTGGTTCCAGATTTGAGAAGGCAGCCAACTGATATCAATGTATCTCTAACCAGTGGTTAA 927 54.37 MEGGEGDAGSGAAAARSDTPMVGTAAPAPEVGGQVGAAAVGKKKRGRPRKYGPDGKLNVAALSPKPISASAPAQAAAVIDFAAERRGRIRPAGLLSKTKFEMENLGEWVACSVGANFTPHIITVNTGEDVTMKVLSFSQQGPRAICILSANGIISSVTLRQPDSSGGTLTYEVGRFEILSLSGSFMPNDRAGTKSRSGGMSVSLASPDGRIVGGGVAGLLVAATPIQVVVGSFLSGNQHEQKPKKPKQDVILPVSALPISSAEPKSYTTTTTTTTPTTTSSFRAETWSPLVPDLRRQPTDINVSLTSG 308
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15008879 15011488 + MC10g1188 Mch10g1504 678597
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1504 308 CDD DUF296 118 233 IPR005175 -
Mch10g1504 308 SUPERFAMILY AF0104/ALDC/Ptd012-like 116 238 - -
Mch10g1504 308 Pfam Plants and Prokaryotes Conserved (PCC) domain 119 233 IPR005175 -
Mch10g1504 308 Gene3D - 119 249 - -
Mch10g1504 308 MobiDBLite consensus disorder prediction 1 54 - -
Mch10g1504 308 ProSiteProfiles PPC domain profile profile. 114 258 IPR005175 -
Mch10g1504 308 MobiDBLite consensus disorder prediction 262 285 - -
Mch10g1504 308 FunFam AT-hook motif nuclear-localized protein 1-like 119 250 - -
Mch10g1504 308 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 31 270 IPR039605 GO:0003680(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1504 Mch-Chr10:15008879 Mch6g2581 Mch-Chr6:27682019 2.72E-131 dispersed
Mch7g0683 Mch-Chr7:11542434 Mch10g1504 Mch-Chr10:15008879 2.26E-67 transposed
Mch10g1504 Mch-Chr10:15008879 Mch7g0752 Mch-Chr7:12143320 2.12E-20 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1504 - - - 0.0