Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1522 ATGGCTTTGTTCATTAAATTCCGGAATTTACCGTGCAAATTCTGGAGCACCGTATTCACTAGACGTTTCCAGTCCGGAAGGAAACCGGCGGCGGATTCCTCCTTCTCTAACGTTGCTGTTTTCTGGGATTTGGATAATAAACCACCGAAATCGCTACCGCCTTATGAGGCTGCTGTTAAGCTCAAGGCTGCAGCGGCTTCCTTCGGCGTCGTTCGGTACTCGGCGGCGTATGCGAACCGCCATACATTTAGTCATGTGCCACAAGTTGTTAGGGAGCATAGAAGAGAGAGGAAGATGCTGAATCAATTGGAGAGAAAGGGTGTGATTAAATCGATTGAGCCGTATCTATGTCGAGTTTGCGGGAGGAATTTTTATACAAACGAGAAGTTAGTGAATCATTTTAAGCAAATTCATGAGAGTGAGCAGAAAAAGAGGTTGAATCAGATAGAGTCTGCTAAAGGTAGTAGAAAAGTGAAGTTGCTCGCCAAGTATTCGATGAAAATACAGAAGTATAAGAATGCTGTTAGGGATGTTTTGACTCCGAAGGTAGGATATGGATTGGGGGATGAGTTGAAGAGGGCGGGGTTTTTCGTGAAGACGGTATCGGATAAGCCAGAAGCGGCCGATGTAGCGTTGAGAAACGACATGGTTGAGATGATGGATAGGAGAAGAGCAGAGTGTCTGGTTCTTGTATCAGATGATTCTGATTTTGTGAATGTGTTGAAGGAGGCCAAGTTGAGATGTCTCAGGACAGTTGTGGTAGGGGATGTTAATGATGGGCCATTGAAGAGAAATGCTGATTCTGGGTTTTCTTGGAAGGAGATTTTGATGGGGAAGGCTAAGAAGGAGGCTGTGTCTGTTGTGGGAAAATGGAAGGATAGAGATGTTTTGAAGAGATTGGAATGGACATATGATCCTCAATTGGAGAAGAAAGTGTCTGGTTTGGATGATATAAGCGAGGATGAAGATGTTGAAGGTTCTGTTAATGGGGAAAATTGTGATGATGTGCAAAATGGTGACAGTGGTGTTTGGTGGGATCTCAGCTCTGATTCTGAAACTGAAATTGTTTCATGTCCA 1077 44.1 MALFIKFRNLPCKFWSTVFTRRFQSGRKPAADSSFSNVAVFWDLDNKPPKSLPPYEAAVKLKAAAASFGVVRYSAAYANRHTFSHVPQVVREHRRERKMLNQLERKGVIKSIEPYLCRVCGRNFYTNEKLVNHFKQIHESEQKKRLNQIESAKGSRKVKLLAKYSMKIQKYKNAVRDVLTPKVGYGLGDELKRAGFFVKTVSDKPEAADVALRNDMVEMMDRRRAECLVLVSDDSDFVNVLKEAKLRCLRTVVVGDVNDGPLKRNADSGFSWKEILMGKAKKEAVSVVGKWKDRDVLKRLEWTYDPQLEKKVSGLDDISEDEDVEGSVNGENCDDVQNGDSGVWWDLSSDSETEIVSCP 359
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15175109 15176185 + MC10g1201 Mch10g1522 678615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1522 359 ProSiteProfiles Zinc finger C2H2 type domain profile. 115 143 IPR013087 -
Mch10g1522 359 MobiDBLite consensus disorder prediction 315 340 - -
Mch10g1522 359 CDD PIN_LabA-like 125 256 - -
Mch10g1522 359 SUPERFAMILY beta-beta-alpha zinc fingers 114 140 IPR036236 -
Mch10g1522 359 Gene3D - 32 275 - -
Mch10g1522 359 ProSitePatterns Zinc finger C2H2 type domain signature. 117 138 IPR013087 -
Mch10g1522 359 Pfam NYN domain 189 267 IPR021139 GO:0004540(InterPro)
Mch10g1522 359 PANTHER C2H2-TYPE DOMAIN-CONTAINING PROTEIN 25 355 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1522 Mch-Chr10:15175109 Mch11g0318 Mch-Chr11:1966448 3.01E-68 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42508 PF01936 NYN 3.20E-09 CL0280 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1522 - - - 0.0