Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1540 ATGCGGGTCAAGGAGATGCACCCTCTCTGCTGCATCTCCCTGGAAAATTTCGGGGTCGGCGGGAGTGGTATTGGGCACAGGTCGCCGGCGGCGGAGGAGGAGGCGGCGTCGTTGTCGAGGAGCAGGAGTTTGCCGGTGAACTTACCGGCATTTTCCACCGGATCCGTACCCAGTGTGACCGGTGTTCTCTACAAATGGACTAATTACGGCAAGGGCTGGAGATCCAGATGGTTCGTTTTGCGAGACGGCGTGCTCTCCTACTCCAAAATCAGCCGCCCGGAGAATCTCACCCTTCTAAGCCCTAATGAAGACGTCCGATTGATCGGACAGATTTCGACGAATCGCCTATTGAGGATCGATAGCGCGAGCGGGAGGCGGAAGCGACAGAAAACTGCGGGAATCGTGCATCTGAAGGTTTCATCGTTCCGGGAAAGCAAGTCCGATGAGCGGCGCTTTTATATATTCACTGCCACGAAGACACTTCATCTGAGAACCGAATCAAAGAAAGACCGGGTGACCTGGATTCAAGCTTTAGCCTCTTCCAGAAGCCTATTTCCGTTGAGAGTTGTGAATGATAATCTTCCCTTTGTACCAAATGATTTATCCGTTTCCACTCAGAAACTCAAGAAGCGTTTACTTCAAGAGGGAATCGGTGAGGCAGTTGTTAAGGACTGCGAACAAATCATCCTCTCCGAGTTCTCAGAAATGCAAGCACAGCTGAAAGTTCTTTTGGAAGAAAGATCTTGTTTAATTGATACCTTAAGGGAGTTGGAGGCAGCTAATATAGAAATTGAAGCTAATGGAATTCACAATGGTGAGTACCAGTTGATGAAACATGATTTTTCCACCGAGTGCAGTGGAAAATTTAGTGAATGTACTACTACCGAGTCTTCAGATGATGTTGAAAAACAAGATATTGAGGATGGATCAGATGTTGATGAAAGTTTCTTTTACGACACTAAAGAATTTTTTACAGACCTCACTCTTACCTGTGGGTCTGTAAACGGACCTTCAGATTCATTAGATAAGATTAAGAACCTTGAATGTCAACAGGATGCTTTAGAGAAGATGCTCCACAAACAGAGAAGTGAAATTTCTGTTCATTCTAATGTTCAGAGAAGAAAAAACCTTCCAGATCCCATCGAGAAAGAGAAGAAAATCAGTCTTTGGTCTATTATCAAAGACAATGTTGGAAAGGATCTTACAAGAGTGTGTCTACCAGTTTATTTCAATGAGCCCATATCATCCCTTCAGAAATGTTGCGAGGACCTCGAATATTCTCATCTTTTAGACCAAGCATATGAATATGGAAGACAGGGAAACAATTTCCTCAGGATCCTCAAGGTTGCTGCGTTTGCTGTTTCTGGTTATGCCTCCTCTGAAGGACGACATTGTAAACCATTCAACCCTTTGCTAGGAGAAACTTATGAAGCTGACTTTCCCGATAAAGGGATTCGATTCTTCTCTGAGAAGGTCAGTCACCACCCAACCGTCATTGCATGCCACTGTGAAGGTAGAGGATGGAAATACTGGGGTGACAGCAACCTCCGATCAAAATTTTGGGGTCGTTCAATTCAACTTGACCCTGTTGGAGTCCTTAACCTGGAATTCGACGATGGAGAAATATTCCAGTGGAGCAAGGTTACAACAAATATTTATAATCTCATTCTTGGAAAAGTATATTGTGATCACCACGGTACAATGCACATACGTGGTAATAGAGAATATTCTTGCACACTTAAGTTCAAAGAGCCATCAATTCTGGATCGAAATCCTCACCAGGTTCATGGATTTATTCAAGATGCTAATGGTCGAAAGGTTGCCACATTATTTGGCAAGTGGGATGAAGGCATGTATTACGTTGAAGGTGAGAGCAATGGAAACCTGAAGCGCAATTGTCCTTCAAGTGATGCCTCAGTGCTGTGGAAAAGCGAAAAGCCTCCGGCCAATCTCACTCGTTACAATTTAACTTTATTTGCCATCACTCTTAATGAATTGACATTGGACCTGAAGGAAAGGCTTCCACCCACGGATTCCAGACTTAGACCAGACCAGCGGCATTTGGAAAATGGCGAATATGAAAAGGCAAATGCAGAGAAACAACGCTTGGAGGGACGACAACGAATTTCCAGGAAGTTGCAAGAAAATGGTTGGAAACCCAGATGGTTCCGAAGAGAGGGTGAAGATGGACCATTCAGATACACGGGTGGCTACTGGGAAACACGAGAGGACGGAAACTGGGATGGTTGCCCAGATATATTTGACGAATTGAACGAGGGCATGATCGGTGAACTGGGATCATGA 2304 44.79 MRVKEMHPLCCISLENFGVGGSGIGHRSPAAEEEAASLSRSRSLPVNLPAFSTGSVPSVTGVLYKWTNYGKGWRSRWFVLRDGVLSYSKISRPENLTLLSPNEDVRLIGQISTNRLLRIDSASGRRKRQKTAGIVHLKVSSFRESKSDERRFYIFTATKTLHLRTESKKDRVTWIQALASSRSLFPLRVVNDNLPFVPNDLSVSTQKLKKRLLQEGIGEAVVKDCEQIILSEFSEMQAQLKVLLEERSCLIDTLRELEAANIEIEANGIHNGEYQLMKHDFSTECSGKFSECTTTESSDDVEKQDIEDGSDVDESFFYDTKEFFTDLTLTCGSVNGPSDSLDKIKNLECQQDALEKMLHKQRSEISVHSNVQRRKNLPDPIEKEKKISLWSIIKDNVGKDLTRVCLPVYFNEPISSLQKCCEDLEYSHLLDQAYEYGRQGNNFLRILKVAAFAVSGYASSEGRHCKPFNPLLGETYEADFPDKGIRFFSEKVSHHPTVIACHCEGRGWKYWGDSNLRSKFWGRSIQLDPVGVLNLEFDDGEIFQWSKVTTNIYNLILGKVYCDHHGTMHIRGNREYSCTLKFKEPSILDRNPHQVHGFIQDANGRKVATLFGKWDEGMYYVEGESNGNLKRNCPSSDASVLWKSEKPPANLTRYNLTLFAITLNELTLDLKERLPPTDSRLRPDQRHLENGEYEKANAEKQRLEGRQRISRKLQENGWKPRWFRREGEDGPFRYTGGYWETREDGNWDGCPDIFDELNEGMIGELGS 767
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15402126 15411693 + MC10g1217 Mch10g1540 678633

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1540 767 FunFam Oxysterol-binding protein-related protein 2A 685 756 - -
Mch10g1540 767 SUPERFAMILY Oxysterol-binding protein-like 383 759 IPR037239 -
Mch10g1540 767 FunFam oxysterol-binding protein-related protein 1D isoform X1 474 646 - -
Mch10g1540 767 Coils Coil 344 364 - -
Mch10g1540 767 Gene3D - 54 184 IPR011993 -
Mch10g1540 767 Coils Coil 686 706 - -
Mch10g1540 767 MobiDBLite consensus disorder prediction 674 705 - -
Mch10g1540 767 SUPERFAMILY PH domain-like 57 179 - -
Mch10g1540 767 ProSiteProfiles PH domain profile. 56 183 IPR001849 -
Mch10g1540 767 Gene3D - 685 746 - -
Mch10g1540 767 Gene3D - 474 646 - -
Mch10g1540 767 Pfam Pleckstrin homology domain 64 179 - -
Mch10g1540 767 SMART PH_update 57 185 IPR001849 -
Mch10g1540 767 Coils Coil 240 260 - -
Mch10g1540 767 PANTHER OXYSTEROL-BINDING PROTEIN-RELATED 60 729 IPR000648 GO:0005829(PANTHER)|GO:0008289(InterPro)|GO:0015248(PANTHER)|GO:0016020(PANTHER)|GO:0032934(PANTHER)|GO:0043231(PANTHER)
Mch10g1540 767 Pfam Oxysterol-binding protein 388 743 IPR000648 GO:0008289(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1540 K20456 - - csv:101213703 1320.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch3g0231 Mch-Chr3:3099866 Mch10g1540 Mch-Chr10:15402126 1.84E-48 transposed
Mch4g1737 Mch-Chr4:20473441 Mch10g1540 Mch-Chr10:15402126 1.58E-280 transposed
Mch9g2319 Mch-Chr9:23310290 Mch10g1540 Mch-Chr10:15402126 3.55E-276 transposed
Mch10g1540 Mch-Chr10:15402126 Mch6g1766 Mch-Chr6:20161188 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g465 . . . . Bpe05g00608 Bpe07g00142 . . Cmo06g01155 . . Cma15g01175 . Car15g01063 Sed01g4010 . . Bhi11g00213 Tan01g2011 Cmetu09g1807 . . Mch10g1540 . . . . . . . . . . . . . Csa05g00361 Chy09g01146 . Blo03g00383 . Bda07g00512 . . Bpe11g00699 Bma05g00788 Bma12g00127 . . Cmo15g01236 Cma06g01130 . Car06g00967 . . Cpe13g00199 Bhi12g00359 . . Lac11g2192 Hepe06g1622 . Lcy12g1745 Cla01g00339 Cam01g0352 Cec01g0348 Cco01g0360 Clacu01g0356 Cmu01g0336 Cre09g2174 Lsi09g00365 . . Cme09g01678
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000881 4 7 4 5 4 2 5 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 3 4 2 88