Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1559 ATGAGGGGTAGTATTTCGTTTCACTTTCAGGGGAAGAAGAAGGGGGAGTTTGAGATTTCACCTTCTTCTCCGATTTGCTCTGGTTTTGCAGAAAAGTGGGTCAAGAAAGGGCAGAAGCAAGAAATAGAAGACAAAGAAGAGGAAGAAGAAGAAGGGGTTTCTTATTTTCTTTTACCCAACAACGAACCCACCTCCGTTCTTCATATGAGAAGCCCCAGCCCTCCCACATCGGCCTCCACTCTGTCTTCTTCCTTTGGCGGCGGCGGCGGAGCTTTGACGGAAAACACCGGCGGATGTGTTCCTTCTCTTCCCCCGGAGACGCCTGCTACGTCGGGGATTGAACCTCTGGCCGGTGGGACGGCGATTTTTTCCGGTGCGTTAGAGCGATGTGGGGTTGGATTGGAAGATTTGGAGAGTATGTGGTCGGAGACGGCCGGGCCAGAGCAGTCGTTTCTCCGGTGGATCGCCGGGGATGTGGAAGATCCCACTCTGGGGATTAAGAATCTTCTGCAGAATGGGAATCTGGGGTTTGATTTTGAGGGCAATGCTGGTATCGGAATCGTCGATCAGGGTTCCGAATTCGACCCCGGGTCCGGTAATGTTCTTGCCAACATCAATCCTAATTTATCGTTTCCTCTTCCTGTTTGTACTGGGTTTTCGGACGTTAATGGGAACAAGTCTTTGAGTAGAAGCTCTTGTGGGGTTGTTAATTACAAGAGTTCTAGTTTGGGGATGAACAATCGCCATGGAAACTTTAATGTGCAGAGCCCCATGTTTTCTGGGTCTGTTGAGAATCTTGTTGTTCCTGTTTCTGGTATGGTTTATCCGCAGCAGCTTCAGCCGTTTGAGAGCTTAGATGAGAAGCCTCAGAATTTGAACCCTCAGGTTATGATGAACCAGCATCAGCAGCCTCAGAATCCAAGCTTTTTTGTGCCGTTGATGTTTGGTCAACAGGAACAGCAGCAGCAGCTGCAGCAGCCTCAACTGAAGAGGCACAATTCGAGTGGAGTCGACCTCCCGAACGGGCAGATCCCAAAAGTTCCGTTTATGGATCCAGGGAATGAGATTTTTCTGAGGAATCATCAGTTGCAGGTTCAGCAGCAGCAGCAGCATTTGGGTTATCCGCCAGGGTTGCAGTTTCTTCCTCAGCAAAAGGCATTGTCGCCGAAGCCGAAAGTTGTTGGGCTTGGCGGTGATGAAATGACGTATCACAATCCCCCACAGCAACATGCTTTGCTCGACCAGCTCTACAAGGCAGCGGAGCTGGTAGGGACTGGGAATTTCTCACACGCGCAAGGGATATTGGCGCGGCTCAATCACCAGCTCTCACCTGTTGGAAAGCCCCTTCAAAGGGCTGCTTTCTACTTCAAGGAGGCTCTTCAATTGCTCCTCCTTATGAACAACCCAGTTAATCCCCCTCCACCTCGCTGCCCGACACCGTTTGATGTGATCTTCAAGATGGGTGCTTACAAGGTGTTCTCGGAAATTTCCCCGCTCATTCAGTTTGTGAATTTCACCTGCAACCAGGCACTGCTCGAGGCCCTTGATGATGACGATCAAATTCACATTGTAGATTTCGATATTGGTTTCGGAGCTCAGTGGGCTTCGTTTATGCAGGAACTGTCCTTGAGGAACCGGGGTGCACCATCGCTAAAAATCACTGCTTTTGCCTCTCCCTCCACTCACCATCCGATTGAACTCGGGCTTATGCGCGAAAATCTTACTCAATTTGCTAATGACATTGGAATAAGTTTTGAGTTCGAAGTGGTTAACTTTGATTCTTTGAACCAGAACTCCTTTTCCTTGCCATTTTCTCGAGCAAGCGAAAACGAGGCTCTTGCAGTAAACTTCCCTCTATGGTCCACATCAAATCAACCAGCACTGCTACCGTCTCTCCTCCGTTTCATCAAGCAACTCTCGCCAAAAATTGTGGTTTCCTTGGACCGGGGGTGTGATCGAAGTGACCTCCCATTCCCTCAGCATTTGCTTCAGGCACTTCAGTCCTACATTAACCTCCTGGAATCTCTGGATGCCGTTAATATGAATTCGGATGCTGTGAACAAGATCGAGAGGTTTCTTCTGCAACCAAGAATTGAAAGCACTGTTCTGGGGCGGCTTCGGGGACCTGAAAGAATGCCCCTTTGGAAGACACTCTTTGCCTCAGCCGGGTATACACCAGTAACATTCAGCAACTTCACCGAAACTCAAGCGGAATGTGTAGCAAAGAGAACTTCTGTGAGGGGATTTCACGTCGAGAAACGCCAGGCTTCCCTAGTCTTATGCTGGCAGCGCCGGGAGCTCATCTCTGCTTCAGCTTGGAGGTGT 2325 49.59 MRGSISFHFQGKKKGEFEISPSSPICSGFAEKWVKKGQKQEIEDKEEEEEEGVSYFLLPNNEPTSVLHMRSPSPPTSASTLSSSFGGGGGALTENTGGCVPSLPPETPATSGIEPLAGGTAIFSGALERCGVGLEDLESMWSETAGPEQSFLRWIAGDVEDPTLGIKNLLQNGNLGFDFEGNAGIGIVDQGSEFDPGSGNVLANINPNLSFPLPVCTGFSDVNGNKSLSRSSCGVVNYKSSSLGMNNRHGNFNVQSPMFSGSVENLVVPVSGMVYPQQLQPFESLDEKPQNLNPQVMMNQHQQPQNPSFFVPLMFGQQEQQQQLQQPQLKRHNSSGVDLPNGQIPKVPFMDPGNEIFLRNHQLQVQQQQQHLGYPPGLQFLPQQKALSPKPKVVGLGGDEMTYHNPPQQHALLDQLYKAAELVGTGNFSHAQGILARLNHQLSPVGKPLQRAAFYFKEALQLLLLMNNPVNPPPPRCPTPFDVIFKMGAYKVFSEISPLIQFVNFTCNQALLEALDDDDQIHIVDFDIGFGAQWASFMQELSLRNRGAPSLKITAFASPSTHHPIELGLMRENLTQFANDIGISFEFEVVNFDSLNQNSFSLPFSRASENEALAVNFPLWSTSNQPALLPSLLRFIKQLSPKIVVSLDRGCDRSDLPFPQHLLQALQSYINLLESLDAVNMNSDAVNKIERFLLQPRIESTVLGRLRGPERMPLWKTLFASAGYTPVTFSNFTETQAECVAKRTSVRGFHVEKRQASLVLCWQRRELISASAWRC 775
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15702033 15704357 + MC10g1234 Mch10g1559 678652
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1559 775 MobiDBLite consensus disorder prediction 67 91 - -
Mch10g1559 775 MobiDBLite consensus disorder prediction 67 90 - -
Mch10g1559 775 Pfam GRAS domain family 413 774 IPR005202 -
Mch10g1559 775 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 366 773 IPR005202 GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0043565(PANTHER)
Mch10g1559 775 ProSiteProfiles GRAS family profile. 403 774 IPR005202 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1559 Mch-Chr10:15702033 Mch4g2611 Mch-Chr4:26368287 3.63E-41 dispersed
Mch10g1559 Mch-Chr10:15702033 Mch10g0747 Mch-Chr10:5171225 7.09E-72 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42511 PF03514 GRAS 1.60E-94 CL0063 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1559 K27747 - csv:101218630 1224.15