Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1562 GTGTTAACATTCTTCAGGCAATACTTGACTCTGTTCCGCAAGTATTTTATGAGGAAGGGGTTGAGAGATCTTGTCGGTGGCGTCGGGGACGGGGAGCCATCGTCGAGTTCGAAGAGGAAGAATGTATATCCGCCAATTGAAGCTTTCTGGCTGCCGCCGGCGGAGGCAGCACCGGTGGAGGCAAAGGGCAGCCGGGGGTTGAGTTCGAAGCTGCTTCAGCCGCTCAAGTTTCGGAGGTCGTCGGAAAAGAGGAGGAGCTTGAAGATGGCCATGGAAGGGAAACATGATCCCAAGGAAGAAGAAGCTGTTGATGCTTTAAGGGAAATGCTTTTTCTTGACTGTCAGTTGCCGCCCAAATTTAACGATTATCATACTCTTCTAAGATTCCTACGCATGAGGGATTTTGATCGTCCAGCAGCAAAAGAAATGTTTTTGAAATTTATTAAATGGCGTGAGGAGTTTAGAACTGATGCAATTTCGAAGGAGTTTAAGTTCGAGGAGAGAGAAGAGGTGAAGAAGTGCTACCCTCATGGATTCCATGGAGTAGACAGATATGGGAGGCCAATCTACATTGAAAGGCTTGGGATGGTTGACCTCAACACACTACTTCAAGTGACAACACTTGAGAGGTTTGTGAAGTATCATGTGTCTGAGCAAGAGAAGACTTTGAGCATTAGATATCCTGCTTGTTCCATACAAGCCAAGAAGCACATTGCATCCACTACGAGCATTTTAGATGTCGGTGGTGTGGGGATGGCTAACTTCTCCAAGCCTGCGAGATATCTCTTTACGGAAATCCAAAAGATCGACAGCAATTACTATCCCGAGACACTACATCAATTGTTTATAATCAATGCTGGGTCAGGGTTTAAGATACTATGGAAAGCATTGAGCGCATTTCTTGATGCACGAACCTTAGCTAAGATTCATGTTTTTGGACATAATTATGTTCAAGAGCTACGCGTGATCATCGATCCGAGTAATTTACCAAGTTTCCTAGGTGGAAATTGTGTTTGTTCTGAATATGGAGGTTGCCTATCAAGTGATAGGGGGCCTTGGAACAATCCTGACATTCTAGCCTTGCTTCAGGTTATTTCTTCGGCAGATGAAGCTTGTGATTATGATGAAGAAGAAAGCGGTTTGGCTTCGGAAGATGCTTGGTTAGATAATAGAAAAATTCAAGCCTTGGAAGAAGCTTTAGCAGAGACTAAGACAAAAATTGAGGCATTAGAAACAGCACTTGAAGATACCAAAGTGATTTTGAGAGAGGTTACACAATATATAGACGACTTAAGAACGTGA 1302 43.86 VLTFFRQYLTLFRKYFMRKGLRDLVGGVGDGEPSSSSKRKNVYPPIEAFWLPPAEAAPVEAKGSRGLSSKLLQPLKFRRSSEKRRSLKMAMEGKHDPKEEEAVDALREMLFLDCQLPPKFNDYHTLLRFLRMRDFDRPAAKEMFLKFIKWREEFRTDAISKEFKFEEREEVKKCYPHGFHGVDRYGRPIYIERLGMVDLNTLLQVTTLERFVKYHVSEQEKTLSIRYPACSIQAKKHIASTTSILDVGGVGMANFSKPARYLFTEIQKIDSNYYPETLHQLFIINAGSGFKILWKALSAFLDARTLAKIHVFGHNYVQELRVIIDPSNLPSFLGGNCVCSEYGGCLSSDRGPWNNPDILALLQVISSADEACDYDEEESGLASEDAWLDNRKIQALEEALAETKTKIEALETALEDTKVILREVTQYIDDLRT 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15732293 15738861 - MC10g1237 Mch10g1562 678655

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1562 433 SMART sec14_4 167 338 IPR001251 -
Mch10g1562 433 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 67 379 IPR051026 -
Mch10g1562 433 Pfam CRAL/TRIO domain 175 335 IPR001251 -
Mch10g1562 433 CDD SEC14 180 336 IPR001251 -
Mch10g1562 433 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 167 341 IPR001251 -
Mch10g1562 433 Coils Coil 393 420 - -
Mch10g1562 433 Gene3D - 156 364 IPR036865 -
Mch10g1562 433 SUPERFAMILY CRAL/TRIO domain 166 359 IPR036865 -
Mch10g1562 433 Gene3D - 77 154 - -
Mch10g1562 433 SMART CRAL_TRIO_N_2 122 147 IPR011074 -
Mch10g1562 433 SUPERFAMILY CRAL/TRIO N-terminal domain 89 162 IPR036273 -
Mch10g1562 433 PRINTS Cellular retinaldehyde-binding protein signature 327 336 - -
Mch10g1562 433 PRINTS Cellular retinaldehyde-binding protein signature 125 147 - -
Mch10g1562 433 PRINTS Cellular retinaldehyde-binding protein signature 294 313 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1562 K26544 - - csv:101210038 588.571
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1562 Mch-Chr10:15732293 Mch2g1096 Mch-Chr2:7421059 1.64E-100 dispersed
Mch10g1562 Mch-Chr10:15732293 Mch2g1095 Mch-Chr2:7412144 7.73E-107 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g535 Blo02g01043 Blo03g00160 Bda06g00028 Bda08g00578 Bpe05g00581 Bpe07g00178 . . . Cmo16g01192 . . . . Sed04g1715 Cpe14g00944 . Bhi11g00193 Tan01g2028 Cmetu06g1269 . . Mch10g1562 . Cla10g00257 Cam10g0263 Cec10g0271 Cco10g0269 Clacu10g0265 Cmu10g1108 Cre10g0516 Cone8ag0396 . Cone6ag0672 Cone9ag0679 Lsi07g01302 . . Cme06g02571 . . . . . . . Bma12g00644 . . . . Cma16g01140 . Car16g01075 . . . . . . . . . . . . . . . . . Csa03g00275 Chy06g02047 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009123 2 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 1 1 33