Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1588 ATGGGCAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCCCTTTGGCGCAATGGGCCTCCCGACAAGCCAGTATTGTGCAATGCATGTGGATCTCGCTGGAGGACAAAGGGAACTCTAGCAAACTATACCCCTCTTCATGCTCGGGCAGATCCTGACGAGTATGATGATAAAAGGATATCTAGGTTGAAGAACTTGTCAATGTTTAAGATCAAAGAAGTGAAACCGCTTAAAAGAAAGCAGCATCCAGACAGTGGAGTTGTGGTGGGGGTTATCCCTGATCATGATCAGAGCTTCCACAAGGCAGTGGAGGAAGATACAAGTAATAGATCAAGTTCTGGATCAGCCATATCAAACTCAGAGAGCTGTGCACAATTCGGCAGTGCGGATGCAAGTGATTTGACAGGCCCCTCACAATCGACGGCATGGGAGACAACAGTGCCTTCTAAAAAGAAGAGGACCTGTGTCAGTCGTTCAAATCCTTCCGCAGTTGAGAAACTCACTAAAGATCTACACTCCATTTTACATGAACAGCAGTCATACTTCTCTGGATCTTCAGAGGAGGATTTGCTTTTTGAGAGCGAAATTCCGATGGTCTCTGTAGAGATAGGACATGGAAGTGTTCTCATGAGGCATCCAAGTTCAATTGCTCGAGAGGAGGAGTCAGAAGCAAGCTCACTTTCAGTTGATAATAAACAGTTCTCTGTAAATGAGGCTTATTCAGAATCGTCCATCCTTCCTGTACGTGGTGAAACTGAGAACAAGATGATCAATTTGTCTACTCTTGGAATTGGGAGAAAACACCCTAATGGACAGGGGTTCATCCAGGAGCAAATTAAAAGGGACAAGCCTCATTCAGAAAAAATGCAAGCACTTGGAAATCATAATTCTCCTCTGTGTAATATAGATCTAACTGACATCCTAAACTTCAGAGAGTTTACGCAGCATTTGACGAGTGAAGATCAGCAAGCATTAATGAAGTATCTGCCTTCTGTTGATACTGAAGAGCTACCAGACAGCTTGAATAGCATGTTTGACAGCCCTCAGTTCAAGGAGAATTTGAATTCTTTCAAGCAGCTGCTCACTGAAGGAGTCTTTGATTTCTCCTTTCGAAGTGCAAGACGAGAAGACTGCAAGACTTTGAGTCGACTTGTGTTGAGGGATTTGTCGAAATCAAAATGGGTGGAACGATATCATCTACTTAAGAAATGTAGTAGTGGAGAGCCTGTTCAAGGTTTTGCTGCTGCATCAAGTAGCTTCATGAATTCCAAGAGATTGCTTGATGGCCAAAACAAAAAGTTTTCAGAAACAAAGACAACGATGAAGAGTCCGAAAAGGGTGATGACGAAGACAAGCACGGAAAGCAAGGAACTCGTCGATAGCGACGGTTCTTGTTTCAGTCCAAGAAGCTTATTTACTTTACCTTCTGATGGAGGTTCCTTCACCCTGGAATCTCTGCATTTTGATGGGGAAAGTTCTGACCAGGATCTCCTGCTGGATGTGAGGTCAAACAGCTCCTTTCCACAAGCAGAGCTCCTTCACCCAACCCTGAGTTTTGGTGCCCAACAGGCAAGCAATAGTAGTAGCTCGGTAAATTTTCGACTTATGCATCGCTGA 1623 44.3 MGKQGPCYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYDDKRISRLKNLSMFKIKEVKPLKRKQHPDSGVVVGVIPDHDQSFHKAVEEDTSNRSSSGSAISNSESCAQFGSADASDLTGPSQSTAWETTVPSKKKRTCVSRSNPSAVEKLTKDLHSILHEQQSYFSGSSEEDLLFESEIPMVSVEIGHGSVLMRHPSSIAREEESEASSLSVDNKQFSVNEAYSESSILPVRGETENKMINLSTLGIGRKHPNGQGFIQEQIKRDKPHSEKMQALGNHNSPLCNIDLTDILNFREFTQHLTSEDQQALMKYLPSVDTEELPDSLNSMFDSPQFKENLNSFKQLLTEGVFDFSFRSARREDCKTLSRLVLRDLSKSKWVERYHLLKKCSSGEPVQGFAAASSSFMNSKRLLDGQNKKFSETKTTMKSPKRVMTKTSTESKELVDSDGSCFSPRSLFTLPSDGGSFTLESLHFDGESSDQDLLLDVRSNSSFPQAELLHPTLSFGAQQASNSSSSVNFRLMHR 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15975942 15983910 + MC10g1256 Mch10g1588 678681

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1588 540 Pfam Asx homology domain 283 374 IPR028020 -
Mch10g1588 540 Gene3D - 290 375 IPR038108 -
Mch10g1588 540 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch10g1588 540 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 297 406 IPR044867 -
Mch10g1588 540 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Mch10g1588 540 PANTHER OSJNBB0038F03.10 PROTEIN 1 373 IPR044589 -
Mch10g1588 540 SMART GATA_3 1 55 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch10g1588 540 MobiDBLite consensus disorder prediction 110 164 - -
Mch10g1588 540 Gene3D - 3 82 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Mch10g1588 540 MobiDBLite consensus disorder prediction 104 164 - -
Mch10g1588 540 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch10g1588 540 CDD ZnF_GATA 6 51 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1588 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1588 Mch-Chr10:15975942 Mch6g2117 Mch-Chr6:23410575 2.84E-236 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch8g0323 . 115 399 C2C2-Gata Transcription Factor Family AT5G25830 55.1 6.5e-71 264.6
Mch11g0766 . 83 352 C2C2-Gata Transcription Factor Family AT5G25830 52.0 1.7e-66 250.0
Mch8g1192 . 68 241 C2C2-Gata Transcription Factor Family AT2G45050 50.2 4.1e-44 175.3
Mch10g0751 . 27 316 C2C2-Gata Transcription Factor Family AT5G66320 51.0 7.1e-65 244.6
Mch1g1560 . 104 269 C2C2-Gata Transcription Factor Family AT4G36240 52.8 4.3e-40 161.8
Mch11g0766 . 71 351 C2C2-Gata Transcription Factor Family AT4G32890 51.0 6.9e-59 224.6
Mch10g1588 . 1 516 C2C2-Gata Transcription Factor Family AT4G17570 53.7 5.8e-135 478.0
Mch6g2117 . 1 518 C2C2-Gata Transcription Factor Family AT4G17570 52.4 3.2e-133 472.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001256 2 2 1 2 3 2 5 2 2 2 2 2 4 2 1 4 2 3 4 2 2 2 2 2 2 2 2 7 3 1 74
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42513 PF13919 ASXH 4.90E-09 No_clan Mch TF