Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1588 ATGGGCAAGCAAGGGCCTTGCTATCACTGTGGAGTTACAAGCACACCCCTTTGGCGCAATGGGCCTCCCGACAAGCCAGTATTGTGCAATGCATGTGGATCTCGCTGGAGGACAAAGGGAACTCTAGCAAACTATACCCCTCTTCATGCTCGGGCAGATCCTGACGAGTATGATGATAAAAGGATATCTAGGTTGAAGAACTTGTCAATGTTTAAGATCAAAGAAGTGAAACCGCTTAAAAGAAAGCAGCATCCAGACAGTGGAGTTGTGGTGGGGGTTATCCCTGATCATGATCAGAGCTTCCACAAGGCAGTGGAGGAAGATACAAGTAATAGATCAAGTTCTGGATCAGCCATATCAAACTCAGAGAGCTGTGCACAATTCGGCAGTGCGGATGCAAGTGATTTGACAGGCCCCTCACAATCGACGGCATGGGAGACAACAGTGCCTTCTAAAAAGAAGAGGACCTGTGTCAGTCGTTCAAATCCTTCCGCAGTTGAGAAACTCACTAAAGATCTACACTCCATTTTACATGAACAGCAGTCATACTTCTCTGGATCTTCAGAGGAGGATTTGCTTTTTGAGAGCGAAATTCCGATGGTCTCTGTAGAGATAGGACATGGAAGTGTTCTCATGAGGCATCCAAGTTCAATTGCTCGAGAGGAGGAGTCAGAAGCAAGCTCACTTTCAGTTGATAATAAACAGTTCTCTGTAAATGAGGCTTATTCAGAATCGTCCATCCTTCCTGTACGTGGTGAAACTGAGAACAAGATGATCAATTTGTCTACTCTTGGAATTGGGAGAAAACACCCTAATGGACAGGGGTTCATCCAGGAGCAAATTAAAAGGGACAAGCCTCATTCAGAAAAAATGCAAGCACTTGGAAATCATAATTCTCCTCTGTGTAATATAGATCTAACTGACATCCTAAACTTCAGAGAGTTTACGCAGCATTTGACGAGTGAAGATCAGCAAGCATTAATGAAGTATCTGCCTTCTGTTGATACTGAAGAGCTACCAGACAGCTTGAATAGCATGTTTGACAGCCCTCAGTTCAAGGAGAATTTGAATTCTTTCAAGCAGCTGCTCACTGAAGGAGTCTTTGATTTCTCCTTTCGAAGTGCAAGACGAGAAGACTGCAAGACTTTGAGTCGACTTGTGTTGAGGGATTTGTCGAAATCAAAATGGGTGGAACGATATCATCTACTTAAGAAATGTAGTAGTGGAGAGCCTGTTCAAGGTTTTGCTGCTGCATCAAGTAGCTTCATGAATTCCAAGAGATTGCTTGATGGCCAAAACAAAAAGTTTTCAGAAACAAAGACAACGATGAAGAGTCCGAAAAGGGTGATGACGAAGACAAGCACGGAAAGCAAGGAACTCGTCGATAGCGACGGTTCTTGTTTCAGTCCAAGAAGCTTATTTACTTTACCTTCTGATGGAGGTTCCTTCACCCTGGAATCTCTGCATTTTGATGGGGAAAGTTCTGACCAGGATCTCCTGCTGGATGTGAGGTCAAACAGCTCCTTTCCACAAGCAGAGCTCCTTCACCCAACCCTGAGTTTTGGTGCCCAACAGGCAAGCAATAGTAGTAGCTCGGTAAATTTTCGACTTATGCATCGCTGA 1623 44.3 MGKQGPCYHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARADPDEYDDKRISRLKNLSMFKIKEVKPLKRKQHPDSGVVVGVIPDHDQSFHKAVEEDTSNRSSSGSAISNSESCAQFGSADASDLTGPSQSTAWETTVPSKKKRTCVSRSNPSAVEKLTKDLHSILHEQQSYFSGSSEEDLLFESEIPMVSVEIGHGSVLMRHPSSIAREEESEASSLSVDNKQFSVNEAYSESSILPVRGETENKMINLSTLGIGRKHPNGQGFIQEQIKRDKPHSEKMQALGNHNSPLCNIDLTDILNFREFTQHLTSEDQQALMKYLPSVDTEELPDSLNSMFDSPQFKENLNSFKQLLTEGVFDFSFRSARREDCKTLSRLVLRDLSKSKWVERYHLLKKCSSGEPVQGFAAASSSFMNSKRLLDGQNKKFSETKTTMKSPKRVMTKTSTESKELVDSDGSCFSPRSLFTLPSDGGSFTLESLHFDGESSDQDLLLDVRSNSSFPQAELLHPTLSFGAQQASNSSSSVNFRLMHR 540
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 15975942 15983910 + MC10g1256 Mch10g1588 678681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1588 540 Pfam Asx homology domain 283 374 IPR028020 -
Mch10g1588 540 Gene3D - 290 375 IPR038108 -
Mch10g1588 540 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch10g1588 540 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 297 406 IPR044867 -
Mch10g1588 540 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 45 - -
Mch10g1588 540 PANTHER OSJNBB0038F03.10 PROTEIN 1 373 IPR044589 -
Mch10g1588 540 SMART GATA_3 1 55 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch10g1588 540 MobiDBLite consensus disorder prediction 110 164 - -
Mch10g1588 540 Gene3D - 3 82 IPR013088 GO:0006355(InterPro)|GO:0008270(InterPro)
Mch10g1588 540 MobiDBLite consensus disorder prediction 104 164 - -
Mch10g1588 540 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
Mch10g1588 540 CDD ZnF_GATA 6 51 IPR000679 GO:0006355(InterPro)|GO:0043565(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1588 Mch-Chr10:15975942 Mch6g2117 Mch-Chr6:23410575 2.84E-236 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42513 PF13919 ASXH 4.90E-09 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1588 - - - 0.0