Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1603 ATGGAGGATCGGTACGAGCCATTGAAGGACCTTGGCTCTGGGAATTTTGGAGTTGCCAGGCTCGTCAGAGACAGGAAGACCAACGAACTCGTTGCAGTCAAGTACATTGAGAGAGGGAAGAAGATTGATGAGAAAGTTCAGAGAGAAATCATTAATCACCAATCGTTGCGGCACCCGAACATTATCAGATTCAAGGAGGTCTTCTTAACCCCAACTCATTTAGCCATTGTCATGGAATATGCAGCTGGAGGAGAGCTTTTTGGAAGGATATGCAGTGCTGGTCGGTTTAGTGAAGACGAGGTTGAATCGCCTTCTGTTCGTTTTCTCCGTACATCTCTGCATCAGGCTAGGTTTTTCTTCCAGCAGCTAATATCTGGAGTCAGCTACTGCCATTCCATGCAAATTTGTCACAGAGATCTGAAGCTGGAAAACACACTCTTGGATGGAAGTCCTACTCCGCAGCTCAAGATATGCGACTTTGGTTACTCAAAGTCTGGTCTATTACACTCGCAACCCAAATCTACGGTCGGGACACCGGCATACATTGCACCGGAGGTTCTGTCGCGGAAGGAGTATGATGGCAAGATTGCAGATGTTTGGTCATGTGGAGTGACATTATATGTGATGTTGATTGGGGCATATCCATTCGAGGATCCCGAAGATCCGAGAAATTTTCGAAAGACAATAGCGAGAATATTGAGTGTTCAATACTCCATACCCGATTACGTTCGTGTGTCCGTGGAGTGTCGCAGCCTCCTTTCTCGCATATTCGTCGCCAACCCCGCTAAGAGGATCACCATCCAAGAGATAAAACAGCTGCCATGGTTTTTCAAGAACTTGCCAAAGGAGCTAATTGAGATTGAGAAAACCAACTTCAAACACCAGGAACACAACCAACCGTCGCAGAGTGTCGACGAAATCATGCAGATCGTCCAGGAAGCAAGGACGCCGGGAGAAGGAGCTAAAGCCGGGGACCAAGCGATGGCCGGAGGGTCGGGGCTCGACGATCTGGACGCTGACATAGATTCTGAAGTTGATGTTAGTGGTGACTACGTAACTGCTGTTTGA 1068 47.85 MEDRYEPLKDLGSGNFGVARLVRDRKTNELVAVKYIERGKKIDEKVQREIINHQSLRHPNIIRFKEVFLTPTHLAIVMEYAAGGELFGRICSAGRFSEDEVESPSVRFLRTSLHQARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGSPTPQLKICDFGYSKSGLLHSQPKSTVGTPAYIAPEVLSRKEYDGKIADVWSCGVTLYVMLIGAYPFEDPEDPRNFRKTIARILSVQYSIPDYVRVSVECRSLLSRIFVANPAKRITIQEIKQLPWFFKNLPKELIEIEKTNFKHQEHNQPSQSVDEIMQIVQEARTPGEGAKAGDQAMAGGSGLDDLDADIDSEVDVSGDYVTAV 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16117857 16121662 - MC10g1270 Mch10g1603 678696

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1603 355 ProSiteProfiles Protein kinase domain profile. 5 276 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g1603 355 PANTHER SERINE/THREONINE KINASE 9 297 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Mch10g1603 355 ProSitePatterns Serine/Threonine protein kinases active-site signature. 135 147 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch10g1603 355 MobiDBLite consensus disorder prediction 317 339 - -
Mch10g1603 355 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524(InterPro)
Mch10g1603 355 Gene3D Transferase(Phosphotransferase) domain 1 81 283 - -
Mch10g1603 355 SUPERFAMILY Protein kinase-like (PK-like) 3 305 IPR011009 -
Mch10g1603 355 SMART serkin_6 5 276 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g1603 355 FunFam Serine/threonine-protein kinase SRK2E 1 80 - -
Mch10g1603 355 Pfam Protein kinase domain 5 276 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g1603 355 CDD STKc_SnRK2 4 275 - -
Mch10g1603 355 Gene3D Phosphorylase Kinase; domain 1 1 80 - -
Mch10g1603 355 FunFam Serine/threonine-protein kinase SRK2E 81 284 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1603 K14498 - - csv:101207431 637.491
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1603 Mch-Chr10:16117857 Mch4g0667 Mch-Chr4:4409237 8.66E-175 dispersed
Mch10g1603 Mch-Chr10:16117857 Mch1g1398 Mch-Chr1:15858440 1.07E-175 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g558 Blo02g01010 . . Bda08g00611 Bpe05g00545 . . . Cmo06g00845 Cmo16g01150 . . . . . Cpe14g00910 . Bhi11g00087 . . . . Mch10g1603 . Cla10g00206 Cam10g0212 Cec10g0217 Cco10g0218 Clacu10g0215 Cmu10g1058 Cre10g0466 . . . . Lsi07g01247 . . Cme06g02518 . . . . . . Bma05g00737 . . . . Cma06g00823 Cma16g01101 . Car16g01042 . . Bhi05g00574 Tan07g1902 . Lac11g2344 Hepe06g1246 . . . . . . . . . . Csa03g00222 Chy06g02099 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000065 7 16 8 7 7 11 10 10 11 8 11 11 10 12 10 9 11 14 10 10 9 6 8 6 7 11 4 12 10 7 283
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77029 PF00069 Pkinase 3.80E-68 CL0016 Mch PK