Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1606 ATGGCGTTGTGTAAGCTTCTCCCGGTGTTCTACGAAGGGTTTGCCATGACCCAATCCACTTCTCTGCTATCGCGATTCCCGAAGAAATCGCTGGCTTCTCAAATCTTTCGCCATTTCCGCTGTGGCGAGTTGCTCCGAGTTCACTTGCGTTTACTGATCCTCCTCTCTTTGCCCTTCGTTTACTTCTTTCTCTCGAACCCTCGTCGCTCGGTTGCTCTCAAGTTCTTCGTCGTACTGTTGTTCTCAATCGCCGCTTTGTTTTTCCTGAATCTTGCAGTCCCTCGCCTCCCCTCTTCGATTCGTCTGTTTCTGGTCCGATCGTCACCAGTTAACCCGTTCTCGTCTTCCGCTGCGACGAAGGCTGCTTCGAATGTTCGGTGGTCGATCGGATCGAAGCCCAAATCGGAGAAACGGATGGCGTCGGGTTCTTGGGTGAAGGTTTACAGTAATGGCGATGTTTACGAGGGGGAGTTTCACAAAGGGAGGTGCTCGGGGAGCGGCGTTTACCACTACCACATGAGTGGGAGGTACGAAGGCGATTGGATTGACGAGAAGTATGATGGGTATGGCGTAGAGACATGGGCGAAAGGCAGCAGGTACCGGGGCCAGTACAGGCAAGGCTTAAGGCATGGAATTGGGATTTACAGATTCTACACAGGGGATGTCTATGCTGGGGAGTGGTCTAATGGGCAGTGCCATGGCTGTGGAGTTCATACTTGTCAAGATGGGAGCCGCTATGTTGGGGAGTTCAAGTGGGGTGTCAAACATGGATTGGGTCACTACCATTTTAGAAATGGAGACACGTATGCAGGAGAGTATTTTGCAGACAGGATGCACGGTTTTGGAGTTTATCGGTTCGGCAATGGACATCGTTACGAGGGAGCTTGGCATGAAGCAAATAGGCAAGGGCTTGGAATGTACACTTTTAGGAATGGAGAAACCCAATCTGGTCATTGGCAAAATGGGATTCTTGATGTTCCCAGTCTAGAAAATAGCCATCCAGGGTCTTCTTATGCTGTCAGCCAAGCCAAAGTTTTCGCTGCAGTCCAGGAAGCAAGAAGAACTGCTCAGAGAGCCTTCGATGCAGGAAGGGTGGACGAAAGAGTTAACAAAGCTGTAGCTGCTGCTAATAGAGCAGCAAACGCAGCAAGAGTTGCAGCTGTAAAGGCTGCCCAGAAACAAATGCAGCATCAAGAGAACTTCACCAACCCATCAATCTTAGTGGTCTGA 1230 50.33 MALCKLLPVFYEGFAMTQSTSLLSRFPKKSLASQIFRHFRCGELLRVHLRLLILLSLPFVYFFLSNPRRSVALKFFVVLLFSIAALFFLNLAVPRLPSSIRLFLVRSSPVNPFSSSAATKAASNVRWSIGSKPKSEKRMASGSWVKVYSNGDVYEGEFHKGRCSGSGVYHYHMSGRYEGDWIDEKYDGYGVETWAKGSRYRGQYRQGLRHGIGIYRFYTGDVYAGEWSNGQCHGCGVHTCQDGSRYVGEFKWGVKHGLGHYHFRNGDTYAGEYFADRMHGFGVYRFGNGHRYEGAWHEANRQGLGMYTFRNGETQSGHWQNGILDVPSLENSHPGSSYAVSQAKVFAAVQEARRTAQRAFDAGRVDERVNKAVAAANRAANAARVAAVKAAQKQMQHQENFTNPSILVV 409
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16150858 16154305 + MC10g1273 Mch10g1606 678699

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1606 409 SMART morn 290 311 IPR003409 -
Mch10g1606 409 SMART morn 175 196 IPR003409 -
Mch10g1606 409 SMART morn 221 242 IPR003409 -
Mch10g1606 409 SMART morn 198 219 IPR003409 -
Mch10g1606 409 SMART morn 152 173 IPR003409 -
Mch10g1606 409 SMART morn 244 265 IPR003409 -
Mch10g1606 409 SMART morn 267 288 IPR003409 -
Mch10g1606 409 PANTHER PHOSPHATIDYLINOSITOL-4-PHOSPHATE 5-KINASE RELATED 124 397 - -
Mch10g1606 409 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 241 328 - -
Mch10g1606 409 Gene3D - 184 229 - -
Mch10g1606 409 Gene3D - 230 274 - -
Mch10g1606 409 Gene3D - 136 183 - -
Mch10g1606 409 Gene3D - 275 345 - -
Mch10g1606 409 FunFam Phosphatidylinositol 4-phosphate 5-kinase 8 183 228 - -
Mch10g1606 409 Pfam MORN repeat 246 268 IPR003409 -
Mch10g1606 409 Pfam MORN repeat 292 313 IPR003409 -
Mch10g1606 409 Pfam MORN repeat 223 245 IPR003409 -
Mch10g1606 409 Pfam MORN repeat 154 172 IPR003409 -
Mch10g1606 409 Pfam MORN repeat 200 222 IPR003409 -
Mch10g1606 409 Pfam MORN repeat 177 199 IPR003409 -
Mch10g1606 409 Pfam MORN repeat 269 291 IPR003409 -
Mch10g1606 409 FunFam Phosphatidylinositol 4-phosphate 5-kinase 8 138 182 - -
Mch10g1606 409 SUPERFAMILY Histone H3 K4-specific methyltransferase SET7/9 N-terminal domain 140 243 - -
Mch10g1606 409 FunFam Phosphatidylinositol 4-phosphate 5-kinase 8 229 274 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1606 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1606 Mch-Chr10:16150858 Mch7g0829 Mch-Chr7:12871945 2.16E-65 dispersed
Mch10g1606 Mch-Chr10:16150858 Mch4g1755 Mch-Chr4:20593489 6.67E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g571 . Blo03g00134 Bda06g01305 . . Bpe07g00201 . . Cmo06g00849 Cmo16g01146 . . . . Sed05g2359 Cpe14g00907 . Bhi11g00093 Tan01g2116 Cmetu06g0894 . Hepe06g1074 Mch10g1606 . Cla10g00203 Cam10g0209 Cec10g0214 Cco10g0215 Clacu10g0212 Cmu10g1055 Cre10g0463 . . Cone6ag0628 Cone9ag0631 Lsi07g01244 . . Cme06g02515 . . . . . . . Bma12g00195 . . Cmo19g00513 Cma06g00826 Cma16g01097 . Car16g01039 . . . . . . . . . . . . . . . . . Csa03g00218 Chy06g02102 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010482 1 1 0 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 0 32