Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1609 ATGAGGTGTTTTTTTAATCCAAAGGGCAAATCCAAGGCTAAAGGGATATCCAAATCTGCTCCAGAGTTGAACCAAGGAGAAAAATCAGACAAATCGGCCAAGGGAAATGGTTTCAGACCATCGAATTCGTTGCCTTCACGGAGTATTCCTGAATTGTACAAAGAGAAGGAGCAAAATTTGAGGGTATTTTCTCTTCAAGAGCTCAGTGATGCAACAAATGGCTTCAACAGGATGTTGAAGATTGGGGAGGGCGGTTTTGGGTCTGTGTATAGAGGAAGAGTTAAGCCCACAACTCCCGATGCTGATCCTCTTGTGGTCGCCATTAAAAAACTCAACCAGCATAGCTTGCAGGGTCATAAAGAATGGCTTGCAGAAGTTCAATTTCTCAGTGTAGTTAGTCATCCGAATCTAGTTCAACTTCTGGGTTATGCTACTGAAAATGGCGAGAGAGGGATCCAAAGACTGTTAGTCTATGAGTTCCTTCCCAACAGGAGCTTGGAACACCATCTTTTCCAAAGAGTGTCGCCGACTCTCCCATGGAAGCAAAGATTAGAGATTATCATTGGTGCAGCTCTGGGCTTGGCATATTTACATGGAGGATTAGAAGCCCAGGTGATATATCGGGATTTTAAATCGTCGAATGTGCTTTTGGATGAGAACTTCAAGCCTAAACTCTCAGACTTTGGCCTTGCTAGAGAAGGCCCGTCCGGCGATCATACGCACGTTTCTACAGCAGTACGTAGGGTGGTTGGAACACATGGATATGCTGCTCCAGAGTATGTCGAAACAGGTCGTCTCACAAGCCAGTGCGATGTATGGAGTTTCGGTGTGGTTCTGTATGAACTTCTCACAGGCAGACGAGCACTGGATAGAAACCGCCCTGGGGCAGAGCAGAAGCTTCTACCTTGGGTGAGGCAGTTTCCAGTTGACAGCAGTATGTTCACCATGTTAATCGATCCTCGACTCCGAAACCAGTATTCCTTGCCTTCTGCCCGGGAAGTCGCAAAGTTGGCAGACCGGTGCCTGAACAAGAATGCAAAGAGTCGACCAACGATGACAGAAGTAGTTGAAAGTTTGCAGAAAGCACTGCAAATATCGGAAGAGAAAACAGGCTCTCAAAGTAGTCAGAAACAGTCTCCATCAAAACTTGTTGATCAAAAACGTGTCAGAGTTGGAAGAAAAGGAAAGGCCTGA 1194 45.9 MRCFFNPKGKSKAKGISKSAPELNQGEKSDKSAKGNGFRPSNSLPSRSIPELYKEKEQNLRVFSLQELSDATNGFNRMLKIGEGGFGSVYRGRVKPTTPDADPLVVAIKKLNQHSLQGHKEWLAEVQFLSVVSHPNLVQLLGYATENGERGIQRLLVYEFLPNRSLEHHLFQRVSPTLPWKQRLEIIIGAALGLAYLHGGLEAQVIYRDFKSSNVLLDENFKPKLSDFGLAREGPSGDHTHVSTAVRRVVGTHGYAAPEYVETGRLTSQCDVWSFGVVLYELLTGRRALDRNRPGAEQKLLPWVRQFPVDSSMFTMLIDPRLRNQYSLPSAREVAKLADRCLNKNAKSRPTMTEVVESLQKALQISEEKTGSQSSQKQSPSKLVDQKRVRVGRKGKA 397
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16173353 16177771 + MC10g1275 Mch10g1609 678702

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1609 397 ProSiteProfiles Protein kinase domain profile. 75 363 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g1609 397 MobiDBLite consensus disorder prediction 1 49 - -
Mch10g1609 397 MobiDBLite consensus disorder prediction 366 382 - -
Mch10g1609 397 MobiDBLite consensus disorder prediction 366 397 - -
Mch10g1609 397 ProSitePatterns Serine/Threonine protein kinases active-site signature. 205 217 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch10g1609 397 PANTHER OS01G0588500 PROTEIN-RELATED 52 363 IPR050823 -
Mch10g1609 397 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 161 374 - -
Mch10g1609 397 Pfam Protein kinase domain 77 357 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g1609 397 Gene3D Phosphorylase Kinase; domain 1 47 160 - -
Mch10g1609 397 Gene3D Transferase(Phosphotransferase) domain 1 161 388 - -
Mch10g1609 397 ProSitePatterns Protein kinases ATP-binding region signature. 81 110 IPR017441 GO:0005524(InterPro)
Mch10g1609 397 SUPERFAMILY Protein kinase-like (PK-like) 57 359 IPR011009 -
Mch10g1609 397 CDD STKc_IRAK 81 361 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1609 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1609 Mch-Chr10:16173353 Mch1g0829 Mch-Chr1:11793730 1.10E-117 dispersed
Mch10g1609 Mch-Chr10:16173353 Mch5g0234 Mch-Chr5:1556662 2.78E-152 wgd
Mch10g1609 Mch-Chr10:16173353 Mch6g2127 Mch-Chr6:23525222 4.63E-167 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g575 . . Bda06g01304 . . . . . Cmo06g00851 . Cma02g01580 . Car02g01344 . . . Cpe05g00210 Bhi11g00096 . . . . Mch10g1609 . Cla10g00201 . . . . . . Cone8ag0440 Cone12ag0425 Cone6ag0626 Cone9ag0627 Lsi07g01242 . Chy04g00037 Cme06g02513 Blo03g00818 . Bda07g00128 Bda09g00691 Bpe08g00866 Bpe11g00359 . . . Cmo02g01622 Cmo19g00393 Cma06g00828 Cma16g01095 . Car16g01036 Cpe08g00701 . Bhi05g00563 . . . . . Lcy12g1885 Cla09g01197 . . . . . . . Csa03g04665 Chy06g02104 Cme04g00046
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77030 PF00069 Pkinase 5.80E-47 CL0016 Mch PK