Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1616 ATGGCGGAATCGGTGGAGCTACCGAGTCGACTCGGAATCCTTCCGTTCAGGAACAAGGTTCTTTTGCCTGGCGCCATCATTCGAATTCGATGCACTTCACCCAGCAGTGTGAAACTGGTTGAACAAGAGTTGTGGCAGCGCGAAGAGAAGGGATTGATTGGTATTCTTCCAGTTCGAGATGATGCTGAAGCATCCGCAATAGGCCCCGTGTTATCTCAAGGCATGGGAAGTGATTCTGGAGATCGTAGTTCAAGGGTCCAAGCTGGAACCTCTGACTCACAAAGAATAGATGGGAAAAATCATCAGGAAGTAATCCAATGGCATTCAAGGGGTGTTGCTGCTCGTGCCTTGCAGCTGTCTAGAGGAGTGGAGAAACCGAGTGGAAGAGTTACATATACAGTTGTACTAGAAGGTTTATGTAGATTCACTGTCCAGGAACTCAGCACCAGAGGAACATATTATACTGCCCGAATATCTCCTTCAGAAATGACGAAGCCAGAGTTGGAGCAAGTGGAGCAAGACCCTGATTTTATTTCATTATCTCGACAATTCAAAGCTACTGCAATGGAGCTTATATCTGTTCTTGAACAGAAACAAAAAACTGGAGGAAGAACAAAAGTTCTTTTGGACACAGTTCCAGTTCACAAATTGGCTGATATATTTGTTGCCAGTTTTGAGATGAGTTTTGAAGAGCAATTATCTATGCTGGATTCAGTTGATTTGAGAGTAAGGCTTTCAAAAGCAATGGAGTTAGTGGACAGGCATTTACAGGCAAGTATTATATCACAAAAGAAGATAACGCAGAAGGTAGAGGGACAGCTATCAAAATCACAGAAAGAATTTCTCTTGCGTCAACAGATGAGGGCCATAAAGGAGGAGCTTGGTGATGACGATGATGAAGATGATTTAGTTGCCCTGGAAAGAAAGATGCAAAGTGCTGAAATGCCTTCAAATATCTGGAAGCATGCTCAGAGGGAGTTGAGGAGCCTTAAAAAAATGCAACCTCAGCAACCTGGATATAACAGTTTGCGTGTGTACCTGGAGCTTCTTGCTGACCTTCCATGGAAGAAGGCAACTGAAGAACATGAATTAGACTTGAAAGCCGCAAAGGAACGTCTTGATAGTGACCACTATGGTTTGGTGAAGGTCAAGCAACGTATTATTGAATATCTTGCTGTTCGGAAGCTTAAGCCAGATGCAAGAGGGCCTGTGTTGTGCTTTGTTGGGCCACCAGGTGTGGGAAAGACATCTTTGGCATCATCTATTGCTGCTGCTCTGGGAAGAAAATTTGTCCGCATATCCCTGGGTGGTGTTAAAGATGAGGCTGACATTAGAGGACATAGGAGGACATACATTGGAAGCATGCCAGGGCGTCTTATTGATGGACTGAAGAGAGTAGCTGTTTGCAATCCAGTCATGCTATTAGATGAGATTGACAAGACAGGTTCTGATGTGCGTGGTGATCCAGCTTCAGCTCTACTTGAGGTTCTTGACCCTGAACAAAACAAAAAGTTCAGTGATCATTATTTGAATGTCCCATTTGACCTCTCAAAGGTTGTATTTGTGGCAACTGCTAACAGAATGCAGCCCATACCTCCTCCTCTTCTAGATAGGATGGAAGTCATTGAGCTGCCTGGATACACACCAGAGGAAAAACTCAAGATTGCAATGCAGCATTTGATACCGCGAGTTTTGGAACAGCATGGGCTAAACACTGAATTTCTTCAAATTCCAGAGGCCATGGTTAAACATGTGATTCAAAGATACACTAGGGAGGCTGGAGTACGAAGTCTTGAGAGGAATTTGGCTGCCCTGGCTCGTGCTGCTGCTGTTAGAGTTGTGGAAAGAGATCAAACGATTCCGACGAGTAAAGACATGCATCAGGTTTCTTCTCCTCTGTTGGAAAACAGACTTTCCGATGGAGCTGAAGTAGATATGGAGGTCATCCCAATTGGAGCGGATCATGAGATACGAAACCCGTTGAGGATAGCCTCTCTGTTGGTTGTTGACGAGGCTATGCTTGAAAAAGTGCTTGGGCCTCCTAGGTTTGATGACCGAGAAGCAGCAGAACGAGTTATATCGCCTGGGATATCCGTTGGGTTGGTTTGGACTGCCTTTGGGGGAGAGGTTCAGTTTGTGGAGGCTACAGCAATGTCTGGAAAGGGAGAATTACATCTCACTGGGCAGCTTGGTGATGTCATTAAAGAATCAGCTCAGATAGCCCTTACCTGGGTAAGAGCAAGGGCAACGGATCTCAAGTTGGCAGCTGCTTGTGAAACCAATCTTTTGGATGGTCGTGATATTCATATACATTTTCCTGCTGGTGCAGTGCCTAAGGATGGGCCTTCAGCTGGTGTGACTCTTGTAACAGCTCTGGTCTCACTGTTTGGTCAGAAAAGAGTTAGAGCTGATACTGCAATGACAGGAGAGATGACTCTGAGGGGTCTCGTGCTACCTGTTGGTGGCATCAAGGATAAGATATTAGCTGCACATCGTTATGGGATAAAGAGAGTTATTCTACCAGAGAGAAATCTGAAAGACTTGGTGGAAGTTCCTTCTGCCGTGCTTGCCAGTCTGGAGATATTACTTGCTAAGCGGATGGAAGATGTACTGGAGCAGGCTTTTGAAGGGGGGTGTCCATGGAGACTACACTCGAAGTTATGA 2664 45.31 MAESVELPSRLGILPFRNKVLLPGAIIRIRCTSPSSVKLVEQELWQREEKGLIGILPVRDDAEASAIGPVLSQGMGSDSGDRSSRVQAGTSDSQRIDGKNHQEVIQWHSRGVAARALQLSRGVEKPSGRVTYTVVLEGLCRFTVQELSTRGTYYTARISPSEMTKPELEQVEQDPDFISLSRQFKATAMELISVLEQKQKTGGRTKVLLDTVPVHKLADIFVASFEMSFEEQLSMLDSVDLRVRLSKAMELVDRHLQASIISQKKITQKVEGQLSKSQKEFLLRQQMRAIKEELGDDDDEDDLVALERKMQSAEMPSNIWKHAQRELRSLKKMQPQQPGYNSLRVYLELLADLPWKKATEEHELDLKAAKERLDSDHYGLVKVKQRIIEYLAVRKLKPDARGPVLCFVGPPGVGKTSLASSIAAALGRKFVRISLGGVKDEADIRGHRRTYIGSMPGRLIDGLKRVAVCNPVMLLDEIDKTGSDVRGDPASALLEVLDPEQNKKFSDHYLNVPFDLSKVVFVATANRMQPIPPPLLDRMEVIELPGYTPEEKLKIAMQHLIPRVLEQHGLNTEFLQIPEAMVKHVIQRYTREAGVRSLERNLAALARAAAVRVVERDQTIPTSKDMHQVSSPLLENRLSDGAEVDMEVIPIGADHEIRNPLRIASLLVVDEAMLEKVLGPPRFDDREAAERVISPGISVGLVWTAFGGEVQFVEATAMSGKGELHLTGQLGDVIKESAQIALTWVRARATDLKLAAACETNLLDGRDIHIHFPAGAVPKDGPSAGVTLVTALVSLFGQKRVRADTAMTGEMTLRGLVLPVGGIKDKILAAHRYGIKRVILPERNLKDLVEVPSAVLASLEILLAKRMEDVLEQAFEGGCPWRLHSKL 887
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16274768 16289703 + MC10g1281 Mch10g1616 678709

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1616 887 SMART AAA_5 401 546 IPR003593 GO:0016887(InterPro)
Mch10g1616 887 PANTHER ATP DEPENDENT LON PROTEASE FAMILY MEMBER 6 882 IPR027065 GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0005524(InterPro)|GO:0005782(PANTHER)|GO:0006625(PANTHER)|GO:0016485(PANTHER)|GO:0030163(InterPro)
Mch10g1616 887 FunFam Lon protease homolog 2, peroxisomal 689 880 - -
Mch10g1616 887 ProSitePatterns ATP-dependent serine proteases, lon family, serine active site. 780 788 IPR008268 GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro)
Mch10g1616 887 FunFam Lon protease homolog 2, peroxisomal 172 298 - -
Mch10g1616 887 Pfam Lon protease AAA+ ATPase lid domain 566 617 IPR054594 -
Mch10g1616 887 ProSiteProfiles Lon N-terminal domain profile. 11 256 IPR003111 -
Mch10g1616 887 Pfam Lon protease (S16) C-terminal proteolytic domain 669 876 IPR008269 GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro)
Mch10g1616 887 Gene3D - 545 639 - -
Mch10g1616 887 Gene3D - 171 298 - -
Mch10g1616 887 ProSiteProfiles Lon proteolytic domain profile. 692 877 IPR008269 GO:0004176(InterPro)|GO:0004252(InterPro)|GO:0006508(InterPro)
Mch10g1616 887 Pfam ATP-dependent protease La (LON) substrate-binding domain 12 254 IPR003111 -
Mch10g1616 887 MobiDBLite consensus disorder prediction 76 95 - -
Mch10g1616 887 Hamap Lon protease homolog 2, peroxisomal [LONP2]. 3 887 IPR027501 GO:0004252(InterPro)|GO:0006515(InterPro)
Mch10g1616 887 PIRSF Lon_proteas 656 878 IPR004815 GO:0004176(InterPro)|GO:0005524(InterPro)|GO:0006508(InterPro)
Mch10g1616 887 PIRSF Lon_proteas 1 639 IPR004815 GO:0004176(InterPro)|GO:0005524(InterPro)|GO:0006508(InterPro)
Mch10g1616 887 FunFam Lon protease homolog 304 353 - -
Mch10g1616 887 FunFam Lon protease homolog 2, peroxisomal 366 544 - -
Mch10g1616 887 CDD RecA-like_Lon 366 547 - -
Mch10g1616 887 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 807 826 - -
Mch10g1616 887 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 409 428 - -
Mch10g1616 887 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 777 796 - -
Mch10g1616 887 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 830 848 - -
Mch10g1616 887 PRINTS Endopeptidase La (Lon) serine protease (S16) signature 695 711 - -
Mch10g1616 887 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 353 619 IPR027417 -
Mch10g1616 887 SUPERFAMILY PUA domain-like 11 253 IPR015947 -
Mch10g1616 887 SUPERFAMILY Ribosomal protein S5 domain 2-like 695 874 IPR020568 -
Mch10g1616 887 MobiDBLite consensus disorder prediction 69 97 - -
Mch10g1616 887 Gene3D - 1 160 IPR046336 -
Mch10g1616 887 NCBIfam endopeptidase La 13 875 IPR004815 GO:0004176(InterPro)|GO:0005524(InterPro)|GO:0006508(InterPro)
Mch10g1616 887 Gene3D - 305 353 - -
Mch10g1616 887 Gene3D - 366 544 IPR027417 -
Mch10g1616 887 SMART lon_5 10 254 IPR003111 -
Mch10g1616 887 Gene3D - 694 879 IPR014721 -
Mch10g1616 887 Pfam ATPase family associated with various cellular activities (AAA) 405 542 IPR003959 GO:0005524(InterPro)|GO:0016887(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1616 K01338 - - csv:101213865 1608.96
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1616 Mch-Chr10:16274768 Mch8g2781 Mch-Chr8:30847445 1.67E-143 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g584 Blo02g01005 . . . Bpe05g00540 . . . Cmo06g00858 Cmo16g01139 . . . . . Cpe14g00900 . Bhi11g00104 . . . . Mch10g1616 . Cla10g00192 Cam10g0198 Cec10g0204 Cco10g0205 Clacu10g0202 Cmu10g1046 Cre10g0452 . . Cone6ag0622 Cone9ag0625 Lsi07g01235 . . Cme06g02505 . . . . . . Bma05g00397 . . . . Cma06g00835 Cma16g01089 . Car16g01031 . . . . . . . . . . . . . . . . . Csa03g00209 . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008731 0 3 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 35