Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1617 ATGGAGTCGCAGCAGAATAATTTGTTTGATACGGCATCTCAACCCGACACCGGGAACGACGCTTACACCTTTCTTGAGTTCAACACCCAGGGGGAAGACTTCGATTATCCCGAATTTCGCGACCCTATTAGGTCCCCTGTTGCGTGGCCGACTCCTTCCGATTCGTTAGCGGATCATACGGACCGCGGTGGCGGGTCGGATCATCAGTCTGATGCGTCTCCGGTTTCCGCTGCGCCGGGAAGCGCCGCGAAAGGCCGGACTGGAGGAGGTTCGGGTAATACCGGTGGTAATAATCAAATGGTTGACGCATTGGCGGCCGGGATGAGTGGGTTGACATTTGAGGATACTGGGGATGACGATAGTTACGAGTTTGGGAAGGGGAATTTCACGGAGCATGCTTGCAGGTATTGTGGGGTTTCGAACCCGGCTTGCGTGGTGAGGTGTAACGTTCCATCATGCCGCAAGTGGTTCTGCAATTCGCGAGGGAACACGTCTGGGTCGCATATTGTGAATCATCTGGTCCGGGCAAAACATAAGGAAGTTTGTCTTCATAAAGACAGTCCTTTGGGAGAAACAATTCTTGAGTGTTACAATTGTGGATGTAGAAATGTTTTCCTCCTTGGATTTATTTCTGCAAAGACAGAAAGCGTGGTTGTTCTACTTTGTAGGGAACCTTGCTTAAGTGTTAATGCTCTGAAGGATATGAATTGGGACTTGAGTCAGTGGTTCCCTCTTATTGATGATAGGTGCTTCTTGCAGTGGCTGGTTAAGATTCCTTCTGAGCAAGAGCAGTTGAGGGCACGCCAAATTAGTGCACAACAAATAAATAAGATTGAGGAACTTTGGAAGACAAACCCAGATGCATCCCTTGAAGATCTTGAAAAACCTGGTGTGGATGATGAACCACAGCCTGTAGCATTGAAATATGAAGATGCTTATCAGTATCAAAATGTTTTTGCACCTCTTATCAAGCTTGAAGCTGATTACGATAAAATGATGAAAGAATCTCAAAGCAAGGATAATGTCACCGTACGTTGGGACATTGGCCTTAACAAGAAGAGAATAGCTTATTTTGTCTTTCCAAAGGAGGACAATGAGTTGCGTCTTGTACCTGGAGACGAGTTAAGGTTACGTTATTCTGGTGATGCTGCTCATCCAGCTTGGCATTCTGTGGGACATGTGATCAAGCTAACTGCACAGGAAGAGGTTGCACTTGAGCTTCGTGCTAGCCAGGGGGTCCCAGTTGATGTTGTCCATGGTTTTAGTGTTGATTTTGTGTGGAAGAGTACTAGCTTTGACCGGATGCAGGGAGCTATGAAGACATTTGCAGTTGATGAGACCAGTGTTAGTGGTTATATCTACCATCACTTATTAGGACATGAAGTGGAGGTCCAGATGGTTCGCAATACACTTCCTCGCCGTTTTGGTGCTCCAGGTCTCCCAGAGCTCAATGCATCCCAAGTTTTTGCTGTAAAAAGTGTTCTTCAGAAGCCAATAAGCTTGATTCAGGGTCCTCCGGGCACTGGAAAAACTGTCACTTCTGCTGCCATAGTGTATCATATGGCCAAACAAGGCCAAGGGCAGGTTCTAGTTTGTGCCCCTAGTAATGTGGCTGTGGACCAGCTGGCGGAGAAGATAAGTGCAACCGGGTTAAAGGTTGTTAGGCTATGTGCAAAATCAAGGGAAGCCGTAAGCTCTCCTGTTGAACATTTAACCCTTCACTATCAGGTTCGACATCTTGACACATCTGAAAGAAGTGAGCTTCATAAGTTGCAACAATTGAAAGATGAACAAGGAGAGTTGTCTAGCAGTGACGAGAAAAAATATAAAGCCCTTAAGAGAGCTACAGAGAGGGAAATTTCACAGAGTGCAGACGTTATTTGTTGCACATGTGTTGGTGCTGGAGATCCTCGCTTGTCAAATTTTAGATTTCGCCAGGTTCTTATTGACGAGTCTACTCAAGCAACAGAACCTGAATGTCTCATTCCTCTTGTTCTTGGAGCAAAGCAGGCATGTGAAGCTGTTCTTGTTGGTGACCATTGCCAACTGGGACCTGTCATTATGTGCAAAAAAGCAGCGCGTGCAGGGCTGGCTCAGTCCCTATTTGAACGCCTTGTTCTTCTTGGTGTGAAGCCAATTAGGTTGCAGGTCCAATATCGTATGCATCCATCACTTTCTGAGTTTCCTTCTAATAGCTTCTATGAGGGTACACTGCAAAATGGAGTTACCATCAACGAAAGGCAATCAACAGGCATTGACTTCCCATGGCCAGTTCCCAACCGTCCAATGTTTTTCTATGTCCAGATGGGACAAGAGGAGATAAGTGCCAGTGGAACATCCTACCTAAATAGGACTGAGGCAGCAAATGTAGAAAAGATTGTGACTACTTTCTTGAGGAGTGGTGTAGTCCCTAGTCAGATTGGTGTTATCACACCTTATGAAGGGCAAAGAGCTTACATTGTGAACTATATGTCGAGAAATGGTGCTCTCAGACAGCAACTTTACAAAGAAATTGAGGTTGCAAGCGTGGATTCATTTCAAGGAAGGGAAAAAGATTACATAATATTGTCATGTGTGAGGAGTAATGAACATCAGGGCATTGGATTTCTTAATGATCCTCGCAGGCTCAATGTGGCTTTAACACGAGCTCGATATGGTATTGTCATTCTTGGAAACCCGAAGGTTTTGAGTAAGCAACCACTGTGGAATAGCTTATTGACACATTACAAGGAACACGAGTGTTTGGTTGAGGGTCCCCTGAATAACTTGAAACAAAGTATGATTCAATTTCAGAAGCCTAAAAAGATATACAATGATCGGCGTCTTTTCTTTGCTGGTGGACCTGGAGTTGTGCCTAATGATAGTTTTGGACCTGTTGCCCCATCTGGCCCTAATGCTGATAGAAGAAGCAGTCGTGGTAGAGGTTCATACTTCCCTCCTCATCTGCCCAACGGTGCCCAAAAGCCTGGAGTGCATGCTTCTGGTTATCCCATGCCACGAGTTCCCCTCCCCTCATTTCATGGTGGTCCTCCACAGCCATATGCAATTCCTACTCGTGGAGCTGTACATGGACCAGTTGGTGCTGTTCCTCATGTCCCTCAACCCGGAAGTAGGGGTTTTGGGGCAGGGCGAGGAAATGCGGGTGCTCCTATTGGTAGTCAGCTTCCAAACCAGCAAGGCACACAACAAAATATTGGAAATCTTGGTTCCACTTTCAACTTCCCTGGTTTGGAGAGTCCCAATAGCCAACCGTCAGTCGGTGGTCCATTGTCTCAGCTTGGGTTTGTCAACAATATGCCTGTTCAGCCACCTTCTCAAACATTTCGTGATGGGTACTCCATGGGTGGAATCTCACAGGACTTCTTGGGTGATGACTTTAAAAGCCAGGGATCACATGTTCCATATAATGTTACTGATTTCTCCACCCAGGCCTCTCAAACTGGATATGCCATTGATTATGTTAGTCAAGGAGCACAGGGTGGCTTTCCAGGGAGCTTCCTGAACCAGAATTCTCAATCTGGATATTCCCGTTTTGGAACAGGAAACGATTTTATGTCGCAGGACTACATGAATCACGGTTCACAAGGCTTATTCACTCAAGTTGGTTTTAGCGATCCCTCATTAGATGATGCCTCTCAGAGTCACTATAACGTGTCCAATGCAAACCCACTACAGTCTCAGCAGGGCATGATGAATTCTCTCTACTCCCAGCCCTTTGCACACTACAATACACAGCCCTCGACCCTTCAGGCCCCACCGCAGCAGCCTCAGCAGGGCCAGAGCTCTCAAAATCAGAAAATTCACTTTAGTGGTTGA 3816 46.23 MESQQNNLFDTASQPDTGNDAYTFLEFNTQGEDFDYPEFRDPIRSPVAWPTPSDSLADHTDRGGGSDHQSDASPVSAAPGSAAKGRTGGGSGNTGGNNQMVDALAAGMSGLTFEDTGDDDSYEFGKGNFTEHACRYCGVSNPACVVRCNVPSCRKWFCNSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKTESVVVLLCREPCLSVNALKDMNWDLSQWFPLIDDRCFLQWLVKIPSEQEQLRARQISAQQINKIEELWKTNPDASLEDLEKPGVDDEPQPVALKYEDAYQYQNVFAPLIKLEADYDKMMKESQSKDNVTVRWDIGLNKKRIAYFVFPKEDNELRLVPGDELRLRYSGDAAHPAWHSVGHVIKLTAQEEVALELRASQGVPVDVVHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLLGHEVEVQMVRNTLPRRFGAPGLPELNASQVFAVKSVLQKPISLIQGPPGTGKTVTSAAIVYHMAKQGQGQVLVCAPSNVAVDQLAEKISATGLKVVRLCAKSREAVSSPVEHLTLHYQVRHLDTSERSELHKLQQLKDEQGELSSSDEKKYKALKRATEREISQSADVICCTCVGAGDPRLSNFRFRQVLIDESTQATEPECLIPLVLGAKQACEAVLVGDHCQLGPVIMCKKAARAGLAQSLFERLVLLGVKPIRLQVQYRMHPSLSEFPSNSFYEGTLQNGVTINERQSTGIDFPWPVPNRPMFFYVQMGQEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIVNYMSRNGALRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALTRARYGIVILGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMIQFQKPKKIYNDRRLFFAGGPGVVPNDSFGPVAPSGPNADRRSSRGRGSYFPPHLPNGAQKPGVHASGYPMPRVPLPSFHGGPPQPYAIPTRGAVHGPVGAVPHVPQPGSRGFGAGRGNAGAPIGSQLPNQQGTQQNIGNLGSTFNFPGLESPNSQPSVGGPLSQLGFVNNMPVQPPSQTFRDGYSMGGISQDFLGDDFKSQGSHVPYNVTDFSTQASQTGYAIDYVSQGAQGGFPGSFLNQNSQSGYSRFGTGNDFMSQDYMNHGSQGLFTQVGFSDPSLDDASQSHYNVSNANPLQSQQGMMNSLYSQPFAHYNTQPSTLQAPPQQPQQGQSSQNQKIHFSG 1271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16292167 16305174 - MC10g1282 Mch10g1617 678710

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1617 1271 Pfam RNA helicase UPF1, 1B domain 337 426 IPR040812 -
Mch10g1617 1271 ProSiteProfiles Upf1 cysteine-histidine-rich (CH-rich) domain profile. 126 285 IPR018999 GO:0000184(InterPro)|GO:0003723(InterPro)|GO:0003724(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0008270(InterPro)
Mch10g1617 1271 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 479 915 IPR027417 -
Mch10g1617 1271 MobiDBLite consensus disorder prediction 954 995 - -
Mch10g1617 1271 FunFam regulator of nonsense transcripts 1 homolog 338 426 - -
Mch10g1617 1271 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 491 623 IPR014001 -
Mch10g1617 1271 Gene3D - 720 931 IPR027417 -
Mch10g1617 1271 PANTHER DNA2/NAM7 HELICASE FAMILY 134 1158 IPR045055 GO:0000184(PANTHER)|GO:0003724(PANTHER)|GO:0005737(PANTHER)
Mch10g1617 1271 Pfam Type III restriction enzyme, res subunit 482 552 IPR006935 GO:0003677(InterPro)|GO:0005524(InterPro)|GO:0016787(InterPro)
Mch10g1617 1271 CDD DEXXQc_UPF1 482 720 - -
Mch10g1617 1271 MobiDBLite consensus disorder prediction 1051 1090 - -
Mch10g1617 1271 CDD 1B_UPF1-like 338 425 IPR040812 -
Mch10g1617 1271 MobiDBLite consensus disorder prediction 1 26 - -
Mch10g1617 1271 Pfam AAA domain 585 688 IPR041677 GO:0004386(InterPro)
Mch10g1617 1271 Gene3D - 568 620 - -
Mch10g1617 1271 MobiDBLite consensus disorder prediction 1 100 - -
Mch10g1617 1271 MobiDBLite consensus disorder prediction 1043 1090 - -
Mch10g1617 1271 CDD ZBD_UPF1-like 133 255 IPR018999 GO:0000184(InterPro)|GO:0003723(InterPro)|GO:0003724(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0008270(InterPro)
Mch10g1617 1271 MobiDBLite consensus disorder prediction 1235 1271 - -
Mch10g1617 1271 Gene3D - 446 719 IPR027417 -
Mch10g1617 1271 FunFam Regulator of nonsense transcripts 1 720 931 - -
Mch10g1617 1271 Pfam AAA domain 697 893 IPR041679 -
Mch10g1617 1271 Pfam RNA helicase (UPF2 interacting domain) 132 285 IPR018999 GO:0000184(InterPro)|GO:0003723(InterPro)|GO:0003724(InterPro)|GO:0005524(InterPro)|GO:0005737(InterPro)|GO:0008270(InterPro)
Mch10g1617 1271 CDD SF1_C_Upf1 721 910 IPR047187 -
Mch10g1617 1271 Gene3D - 338 426 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1617 K14326 - - csv:101214107 2475.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0793 Mch-Chr11:5339424 Mch10g1617 Mch-Chr10:16292167 4.12E-41 transposed
Mch5g1400 Mch-Chr5:14979913 Mch10g1617 Mch-Chr10:16292167 9.64E-49 transposed
Mch6g2512 Mch-Chr6:27024795 Mch10g1617 Mch-Chr10:16292167 3.43E-54 transposed
Mch7g1048 Mch-Chr7:14580947 Mch10g1617 Mch-Chr10:16292167 2.61E-43 transposed
Mch8g0960 Mch-Chr8:6827276 Mch10g1617 Mch-Chr10:16292167 1.16E-39 transposed
Mch9g0140 Mch-Chr9:1075568 Mch10g1617 Mch-Chr10:16292167 1.82E-36 transposed
Mch9g1152 Mch-Chr9:12157188 Mch10g1617 Mch-Chr10:16292167 3.45E-36 transposed
Mch9g1179 Mch-Chr9:12600982 Mch10g1617 Mch-Chr10:16292167 3.05E-43 transposed
Mch10g1617 Mch-Chr10:16292167 Mch5g0260 Mch-Chr5:1738044 5.18E-30 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g599 . . . . . . Bma07g00979 Bma14g00130 Cmo06g00686 Cmo16g01137 . . . . . Cpe14g00898 . Bhi11g00106 . . . . Mch10g1617 . Cla10g00190 Cam10g0195 Cec10g0201 Cco10g0202 Clacu10g0199 Cmu10g1044 Cre10g0450 Cone8ag0446 Cone12ag0435 . . Lsi07g01234 . . Cme06g02503 Blo03g00825 Blo19g00160 Bda07g00115 Bda09g00693 Bpe08g00863 Bpe11g00354 . . . . . Cma06g00659 Cma16g01087 . Car16g01029 . . . . . . . . . . . . . . . . . Csa03g00208 Chy06g02112 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004846 3 2 2 2 2 1 2 1 1 1 1 1 2 1 0 2 1 2 1 1 1 1 1 1 1 1 1 2 1 1 40