Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1642 ATGGCTGGGTTGGATTTAGGAAGTAGATATCTAGCTCACCTCCAAACGCCTGGAGATGATCCAGCAAATCATGGAGCTCATTTCTCCTCGGGCGGTGGCGGCGATCACGACGACGATGATCCCCATCAACCCTTCTCCGGGTCGGGGGATATCGTTGGCCGCCGCCCCCGGGGCCGGCCACCCGGTTCTAAGAACAAGCCGAAGCCGCCGGTGATCATCACGCGCGAGAGCGCCAACACACTACGCGTCCATATTCTAGAGGTCGGCAGCGGCTGCGACATCTTTGATTGCGTCGCTGCTTACGCTCGCCGCCGGCAGCGAGGGATCTGTATTCTGAGTGGCAGCGGCAACGTCACAAATGTCAGCCTCCGGCAGCCGGCGGCGGCCGGGGCAGTGCTGACCCTTCATGGGAGGTTTGAGATTTTATCACTCTCTGGATCTTTTCTTCCGCCGCCGGCTCCGCCGGGCGCCACCAGTTTGACTATATTTTTGGCCGGAGGGCAAGGGCAGGTGGTGGGGGGAACGGTGGCCGGAGAATTAACGGCGGCCGGACCGGTAATTTTGATTGCTGCTTCGTTTACTAATGTGGCGTACGAGAGATTGCCACTGGATGAGGAGGATCAGCAGCAGCAGCTACAAGTACAACAACCATCGTCCGGTGGCGGCGGTGGCAGCGGTGGCGGAGTGAGCAGCAACAACAACAACCCATTTCAAGACCCATCAAATTCCGGCCTTCCGTTCTTGAATTTGCCTCTTCATATGCAAAATGTTCAACTTCCA 780 57.95 MAGLDLGSRYLAHLQTPGDDPANHGAHFSSGGGGDHDDDDPHQPFSGSGDIVGRRPRGRPPGSKNKPKPPVIITRESANTLRVHILEVGSGCDIFDCVAAYARRRQRGICILSGSGNVTNVSLRQPAAAGAVLTLHGRFEILSLSGSFLPPPAPPGATSLTIFLAGGQGQVVGGTVAGELTAAGPVILIAASFTNVAYERLPLDEEDQQQQLQVQQPSSGGGGGSGGGVSSNNNNPFQDPSNSGLPFLNLPLHMQNVQLP 260
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16557884 16558663 + MC10g1306 Mch10g1642 678735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1642 260 MobiDBLite consensus disorder prediction 206 248 - -
Mch10g1642 260 Pfam Plants and Prokaryotes Conserved (PCC) domain 82 194 IPR005175 -
Mch10g1642 260 Gene3D - 81 219 - -
Mch10g1642 260 SUPERFAMILY AF0104/ALDC/Ptd012-like 78 208 - -
Mch10g1642 260 CDD DUF296 82 193 IPR005175 -
Mch10g1642 260 PIRSF ESCAROLA 8 259 IPR014476 GO:0003680(InterPro)
Mch10g1642 260 MobiDBLite consensus disorder prediction 12 72 - -
Mch10g1642 260 ProSiteProfiles PPC domain profile profile. 78 215 IPR005175 -
Mch10g1642 260 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 38 252 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)
Mch10g1642 260 MobiDBLite consensus disorder prediction 207 248 - -
Mch10g1642 260 FunFam AT-hook motif nuclear-localized protein 81 208 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1642 Mch-Chr10:16557884 Mch7g0794 Mch-Chr7:12564553 5.21E-98 dispersed
Mch10g1642 Mch-Chr10:16557884 Mch5g0275 Mch-Chr5:1867047 2.51E-102 wgd
Mch10g1642 Mch-Chr10:16557884 Mch6g2170 Mch-Chr6:24080895 3.30E-104 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1642 - - - 0.0