Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1643 ATGGATTCACGGGAGAGGCCGCTTCCTTCTGTACATCAACCCCAGCCACAATCCACGCCCCCCAACAGGATGATGCCCAACGCTTCGTATTCCTCGAATTTACCCAACGCCAACAATTCTTCGCCATTGATGAATCCCAATTCGGCTGCTGCCCAGATGATGTCCTCCGCATCGCGATTCCCTTTCAACTCTATGATGCCGTCTGCGTCCAAGCCGTCCGAGTCGCCGAATGCGGGTTCTTATGATGGATCGCAGTCTGAATTGAGGACTGGTGGCTTTAACATTGATTCCGGGAAGAAGAAGAGAGGCCGCCCCAGGAAGTATTCCCCAGATGGGAACATCGCTTTGGGCTTAGCGCCCACTCCCATGGCTTCTTCTGCCGTTCCGGGCGATTCCGGCGGCATGCATTCGCCGGAGCCTCGCCCCAAGAAGAACAGGGGAAGGCCGCCTGGCACTGGGAAGAAGCAGATGGATGCTCTGGGTACCGGCGGTGTTGGCTTTACTCCTCATGTCATTCTGGTGAAACCAGGGGAGGACATTGCATCAAAAGTTATGGCATTCTCACAGACTGGGCCACGAACTGTTTGTATTCTCTCTGCCCACGGTGCTGTCTGCAATGTTACTCTTCACCAACCAGCAATGACAGCTAGTAGTGTAACATATGAGGCAAGGCGATACGAAATCATCTCTCTATCAGGTTCCTTCTTGATTTCTGACAGTAATGGTAATCGAAGTCGAACTGGTGGTTTAAGCGTATCCCTAGCAAGTGCAGATGGACAAGTTCTTGGTGGAGTTACCAATATGCTAACAGCAGCATCTACAGTTCAGGTTATAGTGGGTAGCTTCCTTGTGGATGGGAAAAAACTGGGCTCAAGTATACAGAAATCTGGTCCATCTTCTACATCACCTAATATGTTAAACTTTAGTGCACCTGCGGCAGCAGCCTGTCCCTCTGAAGGTGCCTCAAATAATTCATCAGATGACAATGGCGGTAGCCCTTTAAGCCGGGGACCTGGAATGTACACCAATGCCAATCAACCAATTCATAATATGCAGATGTACCAATTATGGGGTAGTCGAAATCAATAA 1089 50.14 MDSRERPLPSVHQPQPQSTPPNRMMPNASYSSNLPNANNSSPLMNPNSAAAQMMSSASRFPFNSMMPSASKPSESPNAGSYDGSQSELRTGGFNIDSGKKKRGRPRKYSPDGNIALGLAPTPMASSAVPGDSGGMHSPEPRPKKNRGRPPGTGKKQMDALGTGGVGFTPHVILVKPGEDIASKVMAFSQTGPRTVCILSAHGAVCNVTLHQPAMTASSVTYEARRYEIISLSGSFLISDSNGNRSRTGGLSVSLASADGQVLGGVTNMLTAASTVQVIVGSFLVDGKKLGSSIQKSGPSSTSPNMLNFSAPAAAACPSEGASNNSSDDNGGSPLSRGPGMYTNANQPIHNMQMYQLWGSRNQ 362
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16564785 16574422 - MC10g1307 Mch10g1643 678736
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1643 362 Gene3D - 169 297 - -
Mch10g1643 362 MobiDBLite consensus disorder prediction 318 345 - -
Mch10g1643 362 MobiDBLite consensus disorder prediction 1 161 - -
Mch10g1643 362 CDD DUF296 168 282 IPR005175 -
Mch10g1643 362 MobiDBLite consensus disorder prediction 22 92 - -
Mch10g1643 362 SUPERFAMILY AF0104/ALDC/Ptd012-like 167 283 - -
Mch10g1643 362 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 42 332 IPR039605 GO:0003680(InterPro)
Mch10g1643 362 MobiDBLite consensus disorder prediction 316 345 - -
Mch10g1643 362 ProSiteProfiles PPC domain profile profile. 163 304 IPR005175 -
Mch10g1643 362 SMART AT_hook_2 143 155 IPR017956 GO:0003677(InterPro)
Mch10g1643 362 SMART AT_hook_2 99 111 IPR017956 GO:0003677(InterPro)
Mch10g1643 362 Pfam Plants and Prokaryotes Conserved (PCC) domain 169 282 IPR005175 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1643 Mch-Chr10:16564785 Mch11g0030 Mch-Chr11:223655 1.36E-67 dispersed
Mch10g1643 Mch-Chr10:16564785 Mch6g2172 Mch-Chr6:24087948 6.28E-104 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1643 - - - 0.0