Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch10g1654 | ATGACGGAGTATCGTTTACAGTCGACGATGAATCTGTGGACCGACGAGAACGCGTCGGTGATGGATGCCTTCATGAATTCCGATCTGTCGTCTTACTGGGCGCCGTCGGCGTCCTCGCAGCCGCTTCACCAGCAGCCGCAATCCTCCGCTTCCACCTCCACGCCGGCGCCGGAGCCGGCCAAATCTCAGCCCTCTTCCGTGGCGGTCTTCAACCAGGAGACGTTGCAGCAGCGCCTCCAGGCGCTGATCGACGGCGCCCGCGAGAGCTGGACCTACGCCATCTTCTGGCAGTCGTCGTACGATTACTCCGGCGGCGGGTCGGTTCTCGGGTGGGGGGATGGGTATTACAAGGGGGAGGAGGATAAGGGGAAGGGGAAGGCGAAAATGGTGGCCTCCGCCGCGGAGCAGGCTCACCGGAAAAAGGTTCTCCGGGAGCTGAATTCGTTGATTTCCGGGTCCGCCGGCGGGCCGGACGATGCGGTGGACGAGGAGGTTACGGATACGGAATGGTTCTTTTTGGTTTCGATGACTCAGTCTTTCGTTAACGGCGTGGGGCTTCCGAGTCAGGCGTTTTTCAGTTCCGCGCCGATTTGGGTCTCCGGCGGCGAGCGGCTGGCGGCGTCGGCCTGTGAACGGGCGCGGCAGGGGAGGGTTTTCGGGCTGCAGACGATGGTCTGTATTCCGTCGGCGAACGGCGTGGTGGAAATGGGGTCGACGGAATTAATCCACCGGACGTCGGATTTGATGAACAAGGTTAAGATTCTGTTCAATTTCAACAATCTGGAAATCGGTTCGTGGCAATCGGGAAGCGCCGCCGCCGACGAAGGCGAAAACGACCCCTCCTCGCTCTGGATCAGCGAGCCGTCGAGCACAATCGAGATGAAAGATTCCATAACCACCGCCCCTTCCGTCTCGATTCCGGCGAAGCAAATCCACTCGGAAAATCCCAGTTCCAGCAGCCTAACGGAAAATCTAACAACGCAGCCGAAACAGAGCCAGAGCCAGAGCTTCTTAAACTTCTCCGATTACGCCTTCGAAGCAAACCCCTCGAAGAACAACAACACCCCATCGTTCAAGCCGGAATCCGGCGGGATGTTGAATTTCGGAGACAGTAATCGGATCGGAAGCCTCTTCTCCGGCCACTCCCAGTACACAACAGAGGAACAAAATGAGAAGAAGAGATCCCCTGCTTCCCGGAGCAGCAACGACGAAGGAATCCTCTCGTTCACCTCCGGCGTGATCCTCCCCTCCTCCGGGAAGGTAAAATCCGGCGACTCCGACCACTCAGATCTGGAAGCTTCAGTAATCCGCGAGGTCGACAGCTGCGTCAAAGTAGCAGAGCCGGAAAAACGCCCAAGAAAAAGAGGGCGAAAGCCGGCGAACGGGAGAGAAGAGCCATTGAATCACGTGGAAGCAGAGAGACAACGGAGGGAGAAATTGAACCAGAAATTCTACGCACTACGAGCGGTGGTTCCGAACGTCTCGAAAATGGACAAAGCCTCTCTTCTGGGGGACGCGGTTTCGTACATCAACGAGCTGAAATCGAAGGTTCAGATGGCAGAGTCGGAGAAAACAGAGGCGTTGAAGCAATTGGAAATGGCGAAGAAGGAGATGGGAAGCAGGGAATTGAAGAGTTTCGAAGATGAGGATCTGAAAATGGTGGGGGGGAGGAAGAGGAAGGCGATGGAGATGGAGGTGGGGATGGAGATGGAGATCGAGGTGAAGATTATGGGATGGGACGCCATGATCAGAATTCAGTGCAGCAAGAAGAATCACCCGGCGGCGAGACTGATGACGGCGCTTAAGGATCTAGATCTCGACATGCTCCACGCGAGCGTGTCGGTGGTGAACGATCTGATGATCCAGCAGGCGGCGGTGAAGATGGGGAGCAGATTTTACACGCAGGAGCAGCTCAAAATGGCGCTCATCGCCAGAGTCGGCGGCGGCGGGGGCCATGGATTCATGTAG | 1968 | 57.01 | MTEYRLQSTMNLWTDENASVMDAFMNSDLSSYWAPSASSQPLHQQPQSSASTSTPAPEPAKSQPSSVAVFNQETLQQRLQALIDGARESWTYAIFWQSSYDYSGGGSVLGWGDGYYKGEEDKGKGKAKMVASAAEQAHRKKVLRELNSLISGSAGGPDDAVDEEVTDTEWFFLVSMTQSFVNGVGLPSQAFFSSAPIWVSGGERLAASACERARQGRVFGLQTMVCIPSANGVVEMGSTELIHRTSDLMNKVKILFNFNNLEIGSWQSGSAAADEGENDPSSLWISEPSSTIEMKDSITTAPSVSIPAKQIHSENPSSSSLTENLTTQPKQSQSQSFLNFSDYAFEANPSKNNNTPSFKPESGGMLNFGDSNRIGSLFSGHSQYTTEEQNEKKRSPASRSSNDEGILSFTSGVILPSSGKVKSGDSDHSDLEASVIREVDSCVKVAEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQKFYALRAVVPNVSKMDKASLLGDAVSYINELKSKVQMAESEKTEALKQLEMAKKEMGSRELKSFEDEDLKMVGGRKRKAMEMEVGMEMEIEVKIMGWDAMIRIQCSKKNHPAARLMTALKDLDLDMLHASVSVVNDLMIQQAAVKMGSRFYTQEQLKMALIARVGGGGGHGFM | 655 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 16658991 | 16661619 | - | MC10g1316 | Mch10g1654 | 678747 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch10g1654 | 655 | PANTHER | MYC | 63 | 645 | IPR045084 | GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro) | |
Mch10g1654 | 655 | MobiDBLite | consensus disorder prediction | 35 | 66 | - | - | |
Mch10g1654 | 655 | SMART | finulus | 470 | 519 | IPR011598 | GO:0046983(InterPro) | |
Mch10g1654 | 655 | Pfam | Plant bHLH transcription factor, ACT-like domain | 572 | 641 | IPR054502 | - | |
Mch10g1654 | 655 | Pfam | bHLH-MYC and R2R3-MYB transcription factors N-terminal | 75 | 256 | IPR025610 | - | |
Mch10g1654 | 655 | Coils | Coil | 510 | 537 | - | - | |
Mch10g1654 | 655 | CDD | bHLH_AtAIB_like | 461 | 537 | - | - | |
Mch10g1654 | 655 | SUPERFAMILY | HLH, helix-loop-helix DNA-binding domain | 467 | 532 | IPR036638 | GO:0046983(InterPro) | |
Mch10g1654 | 655 | FunFam | Transcription factor bHLH13 | 457 | 531 | - | - | |
Mch10g1654 | 655 | ProSiteProfiles | Myc-type, basic helix-loop-helix (bHLH) domain profile. | 464 | 513 | IPR011598 | GO:0046983(InterPro) | |
Mch10g1654 | 655 | MobiDBLite | consensus disorder prediction | 348 | 405 | - | - | |
Mch10g1654 | 655 | MobiDBLite | consensus disorder prediction | 305 | 333 | - | - | |
Mch10g1654 | 655 | Gene3D | - | 463 | 541 | IPR036638 | GO:0046983(InterPro) | |
Mch10g1654 | 655 | MobiDBLite | consensus disorder prediction | 444 | 474 | - | - | |
Mch10g1654 | 655 | Pfam | Helix-loop-helix DNA-binding domain | 468 | 514 | IPR011598 | GO:0046983(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch10g1654 | Mch-Chr10:16658991 | Mch10g1749 | Mch-Chr10:17405570 | 5.21E-30 | dispersed | |
Mch5g0487 | Mch-Chr5:3250061 | Mch10g1654 | Mch-Chr10:16658991 | 2.90E-67 | transposed | |
Mch6g2013 | Mch-Chr6:22513522 | Mch10g1654 | Mch-Chr10:16658991 | 7.82E-27 | transposed | |
Mch10g1654 | Mch-Chr10:16658991 | Mch6g2179 | Mch-Chr6:24128359 | 7.06E-262 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42518 | PF14215 | bHLH-MYC_N | 1.40E-51 | CL0161 | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch10g1654 | K13422 | - | csv:101205372 | 967.222 |