Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1654 ATGACGGAGTATCGTTTACAGTCGACGATGAATCTGTGGACCGACGAGAACGCGTCGGTGATGGATGCCTTCATGAATTCCGATCTGTCGTCTTACTGGGCGCCGTCGGCGTCCTCGCAGCCGCTTCACCAGCAGCCGCAATCCTCCGCTTCCACCTCCACGCCGGCGCCGGAGCCGGCCAAATCTCAGCCCTCTTCCGTGGCGGTCTTCAACCAGGAGACGTTGCAGCAGCGCCTCCAGGCGCTGATCGACGGCGCCCGCGAGAGCTGGACCTACGCCATCTTCTGGCAGTCGTCGTACGATTACTCCGGCGGCGGGTCGGTTCTCGGGTGGGGGGATGGGTATTACAAGGGGGAGGAGGATAAGGGGAAGGGGAAGGCGAAAATGGTGGCCTCCGCCGCGGAGCAGGCTCACCGGAAAAAGGTTCTCCGGGAGCTGAATTCGTTGATTTCCGGGTCCGCCGGCGGGCCGGACGATGCGGTGGACGAGGAGGTTACGGATACGGAATGGTTCTTTTTGGTTTCGATGACTCAGTCTTTCGTTAACGGCGTGGGGCTTCCGAGTCAGGCGTTTTTCAGTTCCGCGCCGATTTGGGTCTCCGGCGGCGAGCGGCTGGCGGCGTCGGCCTGTGAACGGGCGCGGCAGGGGAGGGTTTTCGGGCTGCAGACGATGGTCTGTATTCCGTCGGCGAACGGCGTGGTGGAAATGGGGTCGACGGAATTAATCCACCGGACGTCGGATTTGATGAACAAGGTTAAGATTCTGTTCAATTTCAACAATCTGGAAATCGGTTCGTGGCAATCGGGAAGCGCCGCCGCCGACGAAGGCGAAAACGACCCCTCCTCGCTCTGGATCAGCGAGCCGTCGAGCACAATCGAGATGAAAGATTCCATAACCACCGCCCCTTCCGTCTCGATTCCGGCGAAGCAAATCCACTCGGAAAATCCCAGTTCCAGCAGCCTAACGGAAAATCTAACAACGCAGCCGAAACAGAGCCAGAGCCAGAGCTTCTTAAACTTCTCCGATTACGCCTTCGAAGCAAACCCCTCGAAGAACAACAACACCCCATCGTTCAAGCCGGAATCCGGCGGGATGTTGAATTTCGGAGACAGTAATCGGATCGGAAGCCTCTTCTCCGGCCACTCCCAGTACACAACAGAGGAACAAAATGAGAAGAAGAGATCCCCTGCTTCCCGGAGCAGCAACGACGAAGGAATCCTCTCGTTCACCTCCGGCGTGATCCTCCCCTCCTCCGGGAAGGTAAAATCCGGCGACTCCGACCACTCAGATCTGGAAGCTTCAGTAATCCGCGAGGTCGACAGCTGCGTCAAAGTAGCAGAGCCGGAAAAACGCCCAAGAAAAAGAGGGCGAAAGCCGGCGAACGGGAGAGAAGAGCCATTGAATCACGTGGAAGCAGAGAGACAACGGAGGGAGAAATTGAACCAGAAATTCTACGCACTACGAGCGGTGGTTCCGAACGTCTCGAAAATGGACAAAGCCTCTCTTCTGGGGGACGCGGTTTCGTACATCAACGAGCTGAAATCGAAGGTTCAGATGGCAGAGTCGGAGAAAACAGAGGCGTTGAAGCAATTGGAAATGGCGAAGAAGGAGATGGGAAGCAGGGAATTGAAGAGTTTCGAAGATGAGGATCTGAAAATGGTGGGGGGGAGGAAGAGGAAGGCGATGGAGATGGAGGTGGGGATGGAGATGGAGATCGAGGTGAAGATTATGGGATGGGACGCCATGATCAGAATTCAGTGCAGCAAGAAGAATCACCCGGCGGCGAGACTGATGACGGCGCTTAAGGATCTAGATCTCGACATGCTCCACGCGAGCGTGTCGGTGGTGAACGATCTGATGATCCAGCAGGCGGCGGTGAAGATGGGGAGCAGATTTTACACGCAGGAGCAGCTCAAAATGGCGCTCATCGCCAGAGTCGGCGGCGGCGGGGGCCATGGATTCATGTAG 1968 57.01 MTEYRLQSTMNLWTDENASVMDAFMNSDLSSYWAPSASSQPLHQQPQSSASTSTPAPEPAKSQPSSVAVFNQETLQQRLQALIDGARESWTYAIFWQSSYDYSGGGSVLGWGDGYYKGEEDKGKGKAKMVASAAEQAHRKKVLRELNSLISGSAGGPDDAVDEEVTDTEWFFLVSMTQSFVNGVGLPSQAFFSSAPIWVSGGERLAASACERARQGRVFGLQTMVCIPSANGVVEMGSTELIHRTSDLMNKVKILFNFNNLEIGSWQSGSAAADEGENDPSSLWISEPSSTIEMKDSITTAPSVSIPAKQIHSENPSSSSLTENLTTQPKQSQSQSFLNFSDYAFEANPSKNNNTPSFKPESGGMLNFGDSNRIGSLFSGHSQYTTEEQNEKKRSPASRSSNDEGILSFTSGVILPSSGKVKSGDSDHSDLEASVIREVDSCVKVAEPEKRPRKRGRKPANGREEPLNHVEAERQRREKLNQKFYALRAVVPNVSKMDKASLLGDAVSYINELKSKVQMAESEKTEALKQLEMAKKEMGSRELKSFEDEDLKMVGGRKRKAMEMEVGMEMEIEVKIMGWDAMIRIQCSKKNHPAARLMTALKDLDLDMLHASVSVVNDLMIQQAAVKMGSRFYTQEQLKMALIARVGGGGGHGFM 655
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16658991 16661619 - MC10g1316 Mch10g1654 678747
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1654 655 PANTHER MYC 63 645 IPR045084 GO:0000976(PANTHER)|GO:0003700(PANTHER)|GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)
Mch10g1654 655 MobiDBLite consensus disorder prediction 35 66 - -
Mch10g1654 655 SMART finulus 470 519 IPR011598 GO:0046983(InterPro)
Mch10g1654 655 Pfam Plant bHLH transcription factor, ACT-like domain 572 641 IPR054502 -
Mch10g1654 655 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 75 256 IPR025610 -
Mch10g1654 655 Coils Coil 510 537 - -
Mch10g1654 655 CDD bHLH_AtAIB_like 461 537 - -
Mch10g1654 655 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 467 532 IPR036638 GO:0046983(InterPro)
Mch10g1654 655 FunFam Transcription factor bHLH13 457 531 - -
Mch10g1654 655 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 464 513 IPR011598 GO:0046983(InterPro)
Mch10g1654 655 MobiDBLite consensus disorder prediction 348 405 - -
Mch10g1654 655 MobiDBLite consensus disorder prediction 305 333 - -
Mch10g1654 655 Gene3D - 463 541 IPR036638 GO:0046983(InterPro)
Mch10g1654 655 MobiDBLite consensus disorder prediction 444 474 - -
Mch10g1654 655 Pfam Helix-loop-helix DNA-binding domain 468 514 IPR011598 GO:0046983(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1654 Mch-Chr10:16658991 Mch10g1749 Mch-Chr10:17405570 5.21E-30 dispersed
Mch5g0487 Mch-Chr5:3250061 Mch10g1654 Mch-Chr10:16658991 2.90E-67 transposed
Mch6g2013 Mch-Chr6:22513522 Mch10g1654 Mch-Chr10:16658991 7.82E-27 transposed
Mch10g1654 Mch-Chr10:16658991 Mch6g2179 Mch-Chr6:24128359 7.06E-262 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42518 PF14215 bHLH-MYC_N 1.40E-51 CL0161 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1654 K13422 - csv:101205372 967.222