Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1678 ATGGTTTCGAGGTCTTATTCAAACTTGTTAGAGCTTGCTTCTGGTGGTTGTTCTCCAACTTTTGGGCTTGGCCGAGAGAAGAAGAGGCTACCTAGAGTGGCCACTGTGGCTGGAGTCTTGTCTGAGCTTGACGATGATGGCTGCAACAGCACTGGCTCCGATGCCCCTTCGTCGGTATCGCAAGACCGAATGATCATCGTTGGGAACCAGCTCCCGATTCGAGCGCATCGAGATGAGAATGGAGATTGGGGGTTTAGTATGGATGAGGATTCACTTCTCTTGCAGCTTAAAGATGGGCTTGGAGAAGATGTGGAAGTGATTTACATTGGTTGTCTTAGAGAGGAGGTTGATCCGAGGGAGCAAGATGATGTTGCACAAACTCTTCTCGATCGGTTCAAGTGCGTCCCGACGTTCCTCCCTCCGGAGCTGTTTAGTAAATTTTATCATGGATTCTGCAAGCAACATTTGTGGCCTCTGTTTCACTACATGCTTCCTCTGTCACCGGATCTTGGTGGACGATTTGATCGGTCTCTTTGGCAAGCGTATCTTTCTGTGAATAAGATATTTGCAGACAAAGTAATGGAAGTGATTAGCCCTGACGATGACTTTGTTTGGGTTCATGATTACCATTTGATGGTTTTGCCAACATTTTTGAGGAAGAGGTTTAACAGGGTGAAGCTTGGATTCTTCCTACACAGTCCATTTCCTTCATCCGAGATCTATCGAACCCTTCCCGTAAGAGATGAACTTCTTCGGGCACTATTAAATGCTGATCTTATTGGCTTCCACACGTTTGATTATGCGAGGCACTTTTTGTCTTGCTGCAGCAGAATGCTTGGTCTGTCTTATCAATCTAAGCGAGGTTACATCGGGCTTGAATACTACGGTCGAACTGTGAGCATCAAGATTCTTCCTGTTGGTATTCATATAGGCCAGCTCCAGAATGTGTTAAATCTCCCAGAGACTGTATCCAAAGTCGCAGAATTGCAAGATCGGTTTAGGGGTCAGACTGTTTTGCTTGGGGTTGATGACATGGACATATTTAAAGGGATCAGCCTGAAACTTTTGGCATTTGAACAATTGCTCCGACAACATCCCGAGAGATGGGGTGAAGCTGTTTTAGTACAGATTGCAAATCCTGCAAGAGGAAGAGGGAAAGACGTACAGGAGGTTGTTGCTGAAACTACTGCGACCGTGAATAGAATCAATGCGACGTTCAAAAGGCCAGGATACGAGCCTGTGGTTTTGATTAACACTCCCTTGCAGTTTTATGAGCGAATTGCATACTACGCAATTGCTGAGTGCTGCCTCGTTACCGCAGTGAGGGATGGGATGAACCTTATACCTTATGAATATATTATATGTCGACAAGGCAACGAGAAGCTTGACAGTGTTCTTGGGCTGAATCCTTCAAATGCAAAGAAGAGCATGCTAGTGTTGTCTGAGTTTATTGGGTGTTCTCCATCCCTCAGCGGGGCTATTCGGGTTAACCCATGGAATATCGAAGCTGTCACTGAAGCAATGGATACTGCCCTGGTAATCCCTGAGGCAGAAAAGCAATTGCGACATGAGAAGCATTATCGGTACGTTAGTACACATGATGTTGCGTACTGGGCACGCAGCTTTTTGCAGGACCTGGGCAGGGCCTGCAGAGACCATTCTATGAGGAGGTGCTGGGGTATAGGTTTCGGTTTAGGATTTCGAGTTATCGCGCTGGATCCAAATTTTAGGAAGCTTTCAGTTGATCATATTGTCTCGGTGTATAAGAGAACCTGCCACCGGGCAATCTTGTTAGATTATGATGGTATCATGACGCTTCCAGGCTCAATTAGCATGAATCCAACTTCTGAAGCCATAGGAGTCTTGAACAATTTGTGTAAAGATCCTAAGAATGTCGTGTTCCTTGTTAGTGGAAAGGACCGAAAAACTCTGACTGAATGGTTTTCACCATGCGAAAAGCTCGGACTAGCTGCAGAACACGGTTATTATCTGAGGTCAAATCATACCGCAGATTGGGAGACAAGTGTAGGTGTGACAGATTTCGACTGGAAACAGATTGCAGAACCTGTTATGCAATTGTATACCGAGACAACTGATGGCTCTGCAATTGAAACTAAGGAGAGTGCTCTTGTTTGGAACTACCTTTATGCGGATCCTGATTTTGGGTCGTGCCAGGCCAAGGAACTTTTAGATCACCTGGAAAGTGTTCTTGCCAATGAGCCAGTTTCTGTCAAGAGTGGCCAACATATTGTAGAAGTCAAACCTCAGGGTGTAAACAAGGGTATTGTAGCAGAATCTCTCTTGCAAACAATGAGGGAGAGAGGAATGCTTCCCGACTTCGTTCTATGCATCGGAGACGACAGGTCAGATGAGGATATGTTCGAGGTGATAACAAGTGCAAAGCCCACTCTTCCTCCTGGTGCTGAGGTGTTCGGTTGCACAGTTGGCCAGAAACCGAGCAAGGCCAAGTATTACTTGGAAGACACACACGAAATCTTGAGAATGTTACAAGGTCTCACCCATGCGTCGGAGCATGCTGCTCGAGCCGCACCACAGACGACGCCTCATAGGGTGGTAATTGCAGAGAGTAAATAA 2595 46.09 MVSRSYSNLLELASGGCSPTFGLGREKKRLPRVATVAGVLSELDDDGCNSTGSDAPSSVSQDRMIIVGNQLPIRAHRDENGDWGFSMDEDSLLLQLKDGLGEDVEVIYIGCLREEVDPREQDDVAQTLLDRFKCVPTFLPPELFSKFYHGFCKQHLWPLFHYMLPLSPDLGGRFDRSLWQAYLSVNKIFADKVMEVISPDDDFVWVHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYRTLPVRDELLRALLNADLIGFHTFDYARHFLSCCSRMLGLSYQSKRGYIGLEYYGRTVSIKILPVGIHIGQLQNVLNLPETVSKVAELQDRFRGQTVLLGVDDMDIFKGISLKLLAFEQLLRQHPERWGEAVLVQIANPARGRGKDVQEVVAETTATVNRINATFKRPGYEPVVLINTPLQFYERIAYYAIAECCLVTAVRDGMNLIPYEYIICRQGNEKLDSVLGLNPSNAKKSMLVLSEFIGCSPSLSGAIRVNPWNIEAVTEAMDTALVIPEAEKQLRHEKHYRYVSTHDVAYWARSFLQDLGRACRDHSMRRCWGIGFGLGFRVIALDPNFRKLSVDHIVSVYKRTCHRAILLDYDGIMTLPGSISMNPTSEAIGVLNNLCKDPKNVVFLVSGKDRKTLTEWFSPCEKLGLAAEHGYYLRSNHTADWETSVGVTDFDWKQIAEPVMQLYTETTDGSAIETKESALVWNYLYADPDFGSCQAKELLDHLESVLANEPVSVKSGQHIVEVKPQGVNKGIVAESLLQTMRERGMLPDFVLCIGDDRSDEDMFEVITSAKPTLPPGAEVFGCTVGQKPSKAKYYLEDTHEILRMLQGLTHASEHAARAAPQTTPHRVVIAESK 864
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16832707 16837305 - MC10g1333 Mch10g1678 678771
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1678 864 Pfam Glycosyltransferase family 20 63 546 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Mch10g1678 864 SUPERFAMILY HAD-like 594 839 IPR036412 -
Mch10g1678 864 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 593 710 - -
Mch10g1678 864 Gene3D Glycogen Phosphorylase B; 315 531 - -
Mch10g1678 864 FunFam Alpha,alpha-trehalose-phosphate synthase 316 531 - -
Mch10g1678 864 Gene3D Glycogen Phosphorylase B; 56 314 - -
Mch10g1678 864 NCBIfam trehalose-phosphatase 593 840 IPR003337 GO:0005992(InterPro)
Mch10g1678 864 FunFam Alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 723 852 - -
Mch10g1678 864 CDD GT20_TPS 63 546 IPR001830 GO:0003824(InterPro)|GO:0005992(InterPro)
Mch10g1678 864 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 63 550 - -
Mch10g1678 864 FunFam alpha,alpha-trehalose-phosphate synthase [UDP-forming] 6 56 314 - -
Mch10g1678 864 Pfam Trehalose-phosphatase 597 829 IPR003337 GO:0005992(InterPro)
Mch10g1678 864 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 27 841 IPR001830 GO:0003824(InterPro)|GO:0004805(PANTHER)|GO:0005829(PANTHER)|GO:0005992(PANTHER)|GO:0005992(InterPro)|GO:0070413(PANTHER)
Mch10g1678 864 CDD HAD_TPP 595 831 - -
Mch10g1678 864 FunFam Trehalose-6-phosphate synthase 2 677 756 - -
Mch10g1678 864 Gene3D - 723 854 IPR023214 -
Mch10g1678 864 Gene3D - 593 712 IPR023214 -
Mch10g1678 864 NCBIfam HAD-IIB family hydrolase 596 797 IPR006379 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1678 Mch-Chr10:16832707 Mch9g1356 Mch-Chr9:15890577 0 dispersed
Mch10g1678 Mch-Chr10:16832707 Mch4g0135 Mch-Chr4:891787 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1678 K16055 - csv:101207192 1677.92