Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1679 ATGGACGGGAATGGTAGTGGTGGCGAAGCTGGATTGTCTTCCGGGAGTGGCAGCTCTCCTCCGACGGTGCCGGCTCCTATCACTAATGCGAACGCGCCTCCGCCGTTCTTGAGTAAGACCTATGACATGGTGGATGACCCGGCGTCCGACGCGGTTGTGTCCTGGAGCCCCACTAATAACAGCTTTGTTGTCTGGAACCCGCCTGAGTTCGCTAGGGATCTTTTGCCCAAATACTTCAAGCATAATAACTTCTCCAGCTTCGTTCGGCAGCTCAACACCTATGGATTCAGGAAAGTTGATCCAGACCGTTGGGAATTTGCTAATGAAGGTTTTTTAAGAGGTCAGAAACACCTGCTGAAGAGTATTACTCGGCGAAAACCTGTCCATGGGCACAGTCAGCAACAACCACAGCAGTCTCATGGACAAAGTTCCTCAGTGGGAGCATGTGTAGAAGTTGGTAAGTTCGGTCTGGAGGAAGAGGTTGAGAGGCTTAAAAGAGACAAAAATGTACTTATGCAGGAACTTGTGAGATTGAGGCAGCAGCAACAGACTACTGACAACCAGCTGCAAACTATGGTGCAGCGTCTACAGGGAATGGAGCAGCGACAACAGCAGATGATGTCGTTCCTTGCAAAGGCTGTGCAAAGCCCTGGATTTTTGGCTCAATTTGTGCAGCAGCAAAATGAGAGTACTAGACGAATAAGTGAAGCTAACAAAAAGCGAAGGCTCAAGCAGGATGGAATTGCCGAGTCTCAGCATTCTGCTGTTGCTGATGGGCAAATTGTGAAGTATCAACCTCTCATGAATGACGCAGCGAAAGCAATGCTGAGGCAGATTATGAAAATAGATACTTCACGTTTGGAACCGTCGGACCAAAATACTGACAGTTTCCTTATGAGTGATGGTTTGCCATCATCGTGTGCACTAGACAATGGTAACTCTTCTAGTTCTGTATCAGGTGTGACTCTGCAAGAAGTACCTCCGACCTCAGGGCAGCCATCTTTTACTTCAGCGGCTGCTCCTCATGGCCCCTCAACTGCGAGATCAGAAATACAATCATCACCCCAAGCTACAACTTCTGACAAGGTTTCAACCGTCCCTTTTTCTGTTAATGCTGTGCGGGGTCCAGGGGCACGGGAAGCTTCTTCCTTGTCGGTTTCTGAGACTGATGTAATCATGCCCGAGCTTTCTCCAATGACTGAGATGGTGTCTGAGAACGTTGTTGATGTTCCTGGAGCAGATTATAGGATGCCCGAGACAGGAAATGGTGCATTTATTAATCCGAGTATGTTGGAAGCCAGCGGAACTATTCCAATCGAGATCGATAACATATCTCCTGATCCTGATATTGATGCCTTACTAGACAACTCCAACTTCTGGGATGATCTGCTCGTGCAGAGTCCGGGTCAGGAAGAGGTTGACTTTTTGGCTGGAGGATTCCCAAATGATATGCAGCCAGTAGAAAATTTATGGGACAAATCAAAACACGTGGATAAACTTACGGAACAGATGGGACTTCTCACTTCAGAAATGAAAAGGGTTTGA 1545 47.7 MDGNGSGGEAGLSSGSGSSPPTVPAPITNANAPPPFLSKTYDMVDDPASDAVVSWSPTNNSFVVWNPPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDRWEFANEGFLRGQKHLLKSITRRKPVHGHSQQQPQQSHGQSSSVGACVEVGKFGLEEEVERLKRDKNVLMQELVRLRQQQQTTDNQLQTMVQRLQGMEQRQQQMMSFLAKAVQSPGFLAQFVQQQNESTRRISEANKKRRLKQDGIAESQHSAVADGQIVKYQPLMNDAAKAMLRQIMKIDTSRLEPSDQNTDSFLMSDGLPSSCALDNGNSSSSVSGVTLQEVPPTSGQPSFTSAAAPHGPSTARSEIQSSPQATTSDKVSTVPFSVNAVRGPGAREASSLSVSETDVIMPELSPMTEMVSENVVDVPGADYRMPETGNGAFINPSMLEASGTIPIEIDNISPDPDIDALLDNSNFWDDLLVQSPGQEEVDFLAGGFPNDMQPVENLWDKSKHVDKLTEQMGLLTSEMKRV 514
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16848749 16855062 + MC10g1334 Mch10g1679 678772

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1679 514 Coils Coil 154 181 - -
Mch10g1679 514 FunFam Heat shock transcription factor 1 29 126 - -
Mch10g1679 514 PRINTS Heat shock factor (HSF) domain signature 87 99 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch10g1679 514 PRINTS Heat shock factor (HSF) domain signature 74 86 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch10g1679 514 PRINTS Heat shock factor (HSF) domain signature 36 59 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch10g1679 514 MobiDBLite consensus disorder prediction 308 363 - -
Mch10g1679 514 MobiDBLite consensus disorder prediction 128 146 - -
Mch10g1679 514 Gene3D - 28 126 IPR036388 -
Mch10g1679 514 SUPERFAMILY Winged helix DNA-binding domain 31 125 IPR036390 -
Mch10g1679 514 ProSitePatterns HSF-type DNA-binding domain signature. 75 99 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch10g1679 514 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 22 337 IPR027725 GO:0000978(PANTHER)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0034605(PANTHER)
Mch10g1679 514 MobiDBLite consensus disorder prediction 9 25 - -
Mch10g1679 514 MobiDBLite consensus disorder prediction 124 146 - -
Mch10g1679 514 SMART hsfneu3 32 125 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch10g1679 514 Pfam HSF-type DNA-binding 36 125 IPR000232 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Mch10g1679 514 MobiDBLite consensus disorder prediction 1 35 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1679 K09419 - - csv:101207437 807.749
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1679 Mch-Chr10:16848749 Mch8g0564 Mch-Chr8:4032689 7.33E-65 dispersed
Mch10g1679 Mch-Chr10:16848749 Mch9g0901 Mch-Chr9:7069155 9.23E-72 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi2g705 Blo02g00985 . Bda06g01262 Bda08g00638 . . . . Cmo06g00645 Cmo16g01225 . . . . Sed10g1395 Cpe14g00974 . Bhi11g00015 Tan08g0173 Cmetu05g1605 . . Mch10g1679 . Cla10g00139 Cam10g0138 Cec10g0148 Cco10g0148 Clacu10g0142 Cmu10g0989 Cre10g0400 . . . . Lsi07g01178 . . Cme06g02455 . . . . . . Bma05g00705 . . . . Cma06g00639 Cma16g01175 Car06g00570 Car16g01108 . . . . . . . . . . . . . . . . . Csa03g00150 Chy06g02159 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g0901 . 42 271 HSF AT4G17750 52.6 2.2e-59 226.9
Mch8g0564 . 44 244 HSF AT4G17750 54.6 4.2e-58 222.6
Mch9g1357 . 15 215 HSF AT4G17750 55.7 9.7e-55 211.5
Mch5g0557 . 24 252 HSF AT4G17750 50.2 4.5e-52 202.6
Mch3g1053 . 14 186 HSF AT4G17750 52.2 3.8e-43 172.9
Mch2g0702 . 7 109 HSF AT4G17750 67.0 5.2e-40 162.5
Mch8g0678 . 16 129 HSF AT4G17750 64.9 1.7e-38 157.5
Mch11g0300 . 67 165 HSF AT4G17750 69.7 2.8e-38 156.8
Mch6g2698 . 20 115 HSF AT4G17750 69.8 2.0e-36 150.6
Mch10g1679 . 18 513 HSF AT5G16820 50.3 1.2e-102 370.5
Mch9g0901 . 43 254 HSF AT5G16820 58.3 8.8e-61 231.5
Mch8g0564 . 45 243 HSF AT5G16820 51.7 2.7e-54 209.9
Mch5g0557 . 39 243 HSF AT5G16820 50.5 1.0e-48 191.4
Mch1g1963 . 9 139 HSF AT5G16820 60.7 1.5e-39 161.0
Mch2g0702 . 12 111 HSF AT5G16820 74.0 1.0e-37 154.8
Mch10g1679 . 13 510 HSF AT1G32330 53.5 2.9e-120 429.1
Mch9g0901 . 18 246 HSF AT1G32330 52.5 1.0e-61 234.6
Mch8g0564 . 33 225 HSF AT1G32330 53.7 6.1e-54 208.8
Mch5g0557 . 25 234 HSF AT1G32330 55.7 8.9e-53 204.9
Mch2g0702 . 6 111 HSF AT1G32330 67.9 1.3e-40 164.5
Mch1g1963 . 7 139 HSF AT1G32330 58.3 1.7e-40 164.1
Mch8g0678 . 22 122 HSF AT1G32330 71.3 9.5e-39 158.3
Mch11g0300 . 69 164 HSF AT1G32330 71.9 1.4e-37 154.5
Mch9g0901 . 43 249 HSF AT3G02990 57.1 5.6e-60 228.8
Mch8g0564 . 45 244 HSF AT3G02990 52.2 1.4e-55 214.2
Mch1g1963 . 9 138 HSF AT3G02990 57.3 2.1e-38 157.1
Mch2g0702 . 3 105 HSF AT3G02990 68.9 7.8e-38 155.2
Mch9g0901 . 15 245 HSF AT2G26150 55.6 5.3e-68 255.0
Mch5g0557 . 16 238 HSF AT2G26150 61.5 1.5e-62 236.9
Mch10g1679 . 8 243 HSF AT2G26150 56.1 2.8e-61 232.6
Mch3g1053 . 14 158 HSF AT2G26150 55.5 5.0e-42 168.7
Mch1g1963 . 12 139 HSF AT2G26150 61.7 2.1e-40 163.3
Mch5g0557 . 39 173 HSF AT4G18880 52.2 8.7e-38 154.8
Mch5g0218 . 125 576 HSF AT4G13980 52.1 1.3e-112 403.7
Mch8g0564 . 33 236 HSF AT5G43840 50.5 7.3e-47 184.5
Mch5g0557 . 27 174 HSF AT5G43840 58.8 4.0e-45 178.7
Mch9g0901 . 24 360 HSF AT3G22830 51.9 2.0e-90 329.7
Mch8g0564 . 33 242 HSF AT3G22830 55.9 7.2e-64 241.5
Mch10g1679 . 31 242 HSF AT3G22830 59.0 3.9e-62 235.7
Mch9g0901 . 31 246 HSF AT3G51910 61.8 3.0e-66 248.8
Mch8g0564 . 33 249 HSF AT3G51910 51.6 4.1e-55 211.8
Mch9g0901 . 27 235 HSF AT3G63350 57.9 4.2e-63 238.4
Mch8g0564 . 33 232 HSF AT3G63350 53.0 4.9e-51 198.4
Mch9g0901 . 44 232 HSF AT1G67970 51.8 6.9e-45 178.3
Mch1g1212 . 2 300 HSF AT4G36990 54.3 9.2e-74 273.9
Mch6g2698 . 16 336 HSF AT4G11660 52.1 3.0e-80 295.8
Mch11g0300 . 63 166 HSF AT4G11660 74.0 6.9e-45 178.3
Mch8g0678 . 18 124 HSF AT4G11660 69.2 2.2e-43 173.3
Mch1g1212 . 2 107 HSF AT4G11660 70.8 2.5e-42 169.9
Mch6g1258 . 10 107 HSF AT4G11660 68.4 1.8e-37 153.7
Mch10g1679 . 33 126 HSF AT4G11660 69.1 1.6e-36 150.6
Mch1g0401 . 31 216 HSF AT2G41690 56.6 1.3e-47 186.8
Mch11g0300 . 48 398 HSF AT1G46264 52.2 1.2e-88 323.6
Mch8g0678 . 21 342 HSF AT1G46264 52.6 5.0e-82 301.6
Mch6g1258 . 5 200 HSF AT1G46264 54.3 1.6e-56 216.9
Mch10g1679 . 33 138 HSF AT1G46264 72.6 9.6e-41 164.5
Mch5g0218 . 124 219 HSF AT1G46264 71.9 6.4e-37 151.8
Mch2g0702 . 11 104 HSF AT1G46264 72.3 8.4e-37 151.4
Mch6g0800 . 7 179 HSF AT3G24520 65.3 3.0e-60 229.2
Mch9g0901 . 42 271 HSF AT4G17750 52.6 2.2e-59 226.9
Mch8g0564 . 44 244 HSF AT4G17750 54.6 4.2e-58 222.6
Mch9g1357 . 15 215 HSF AT4G17750 55.7 9.7e-55 211.5
Mch5g0557 . 24 252 HSF AT4G17750 50.2 4.5e-52 202.6
Mch3g1053 . 14 186 HSF AT4G17750 52.2 3.8e-43 172.9
Mch2g0702 . 7 109 HSF AT4G17750 67.0 5.2e-40 162.5
Mch8g0678 . 16 129 HSF AT4G17750 64.9 1.7e-38 157.5
Mch11g0300 . 67 165 HSF AT4G17750 69.7 2.8e-38 156.8
Mch6g2698 . 20 115 HSF AT4G17750 69.8 2.0e-36 150.6
Mch10g1679 . 18 513 HSF AT5G16820 50.3 1.2e-102 370.5
Mch9g0901 . 43 254 HSF AT5G16820 58.3 8.8e-61 231.5
Mch8g0564 . 45 243 HSF AT5G16820 51.7 2.7e-54 209.9
Mch5g0557 . 39 243 HSF AT5G16820 50.5 1.0e-48 191.4
Mch1g1963 . 9 139 HSF AT5G16820 60.7 1.5e-39 161.0
Mch2g0702 . 12 111 HSF AT5G16820 74.0 1.0e-37 154.8
Mch10g1679 . 13 510 HSF AT1G32330 53.5 2.9e-120 429.1
Mch9g0901 . 18 246 HSF AT1G32330 52.5 1.0e-61 234.6
Mch8g0564 . 33 225 HSF AT1G32330 53.7 6.1e-54 208.8
Mch5g0557 . 25 234 HSF AT1G32330 55.7 8.9e-53 204.9
Mch2g0702 . 6 111 HSF AT1G32330 67.9 1.3e-40 164.5
Mch1g1963 . 7 139 HSF AT1G32330 58.3 1.7e-40 164.1
Mch8g0678 . 22 122 HSF AT1G32330 71.3 9.5e-39 158.3
Mch11g0300 . 69 164 HSF AT1G32330 71.9 1.4e-37 154.5
Mch9g0901 . 43 249 HSF AT3G02990 57.1 5.6e-60 228.8
Mch8g0564 . 45 244 HSF AT3G02990 52.2 1.4e-55 214.2
Mch1g1963 . 9 138 HSF AT3G02990 57.3 2.1e-38 157.1
Mch2g0702 . 3 105 HSF AT3G02990 68.9 7.8e-38 155.2
Mch9g0901 . 15 245 HSF AT2G26150 55.6 5.3e-68 255.0
Mch5g0557 . 16 238 HSF AT2G26150 61.5 1.5e-62 236.9
Mch10g1679 . 8 243 HSF AT2G26150 56.1 2.8e-61 232.6
Mch3g1053 . 14 158 HSF AT2G26150 55.5 5.0e-42 168.7
Mch1g1963 . 12 139 HSF AT2G26150 61.7 2.1e-40 163.3
Mch5g0557 . 39 173 HSF AT4G18880 52.2 8.7e-38 154.8
Mch5g0218 . 125 576 HSF AT4G13980 52.1 1.3e-112 403.7
Mch8g0564 . 33 236 HSF AT5G43840 50.5 7.3e-47 184.5
Mch5g0557 . 27 174 HSF AT5G43840 58.8 4.0e-45 178.7
Mch9g0901 . 24 360 HSF AT3G22830 51.9 2.0e-90 329.7
Mch8g0564 . 33 242 HSF AT3G22830 55.9 7.2e-64 241.5
Mch10g1679 . 31 242 HSF AT3G22830 59.0 3.9e-62 235.7
Mch9g0901 . 31 246 HSF AT3G51910 61.8 3.0e-66 248.8
Mch8g0564 . 33 249 HSF AT3G51910 51.6 4.1e-55 211.8
Mch9g0901 . 27 235 HSF AT3G63350 57.9 4.2e-63 238.4
Mch8g0564 . 33 232 HSF AT3G63350 53.0 4.9e-51 198.4
Mch9g0901 . 44 232 HSF AT1G67970 51.8 6.9e-45 178.3
Mch1g1212 . 2 300 HSF AT4G36990 54.3 9.2e-74 273.9
Mch6g2698 . 16 336 HSF AT4G11660 52.1 3.0e-80 295.8
Mch11g0300 . 63 166 HSF AT4G11660 74.0 6.9e-45 178.3
Mch8g0678 . 18 124 HSF AT4G11660 69.2 2.2e-43 173.3
Mch1g1212 . 2 107 HSF AT4G11660 70.8 2.5e-42 169.9
Mch6g1258 . 10 107 HSF AT4G11660 68.4 1.8e-37 153.7
Mch10g1679 . 33 126 HSF AT4G11660 69.1 1.6e-36 150.6
Mch1g0401 . 31 216 HSF AT2G41690 56.6 1.3e-47 186.8
Mch11g0300 . 48 398 HSF AT1G46264 52.2 1.2e-88 323.6
Mch8g0678 . 21 342 HSF AT1G46264 52.6 5.0e-82 301.6
Mch6g1258 . 5 200 HSF AT1G46264 54.3 1.6e-56 216.9
Mch10g1679 . 33 138 HSF AT1G46264 72.6 9.6e-41 164.5
Mch5g0218 . 124 219 HSF AT1G46264 71.9 6.4e-37 151.8
Mch2g0702 . 11 104 HSF AT1G46264 72.3 8.4e-37 151.4
Mch6g0800 . 7 179 HSF AT3G24520 65.3 3.0e-60 229.2
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004373 2 1 1 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 6 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42520 PF00447 HSF_DNA-bind 4.80E-33 CL0123 Mch TF