Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1695 ATGAGTAGCAGTGAGATGGAGAAACCACCTAAAGACAAGGAGACGAAGACAACGCCTCCTACTACCCAGGAGCAGACTTCAACCACAAGCGCTGGCACAGTTAATCCTGACTGGTCAGGTTTTCAGGCATATTCTCCTATTCCTCCGCATGGTTTCTTGGCATCAAGCCCCCAAGCCCCCCACCCATATATGTGGGGAGTGCAGCACATTATGCCACCTTATGGCACGCCTCCACATCCATATGTTGCAATGTATCCACCTGGCGGCATATATGCTCATCCTTCCATCCCCCCGGGATCGTATCCTTTTAGCCCATTTGCTATGCCTTCTCCAAATGGCATCACTGAAGCCTCTGGGAATACAGCTGGCAGCTTAGAGGGGGAGGTTAAGCCACCCGAAGTGAAGGAAAAGCTGCCAATTAAAAGATCAAAAGGAAGTTTGGGCAGTTTGAACATGATCACAGGGAATAATAACGAGCTTGGTAAAACATCTGGAACATCTGCCAATGGAGCATACTCCAAGAGTGGTGAGAGTGCCAGCGAAGGTACAAGTGAAGGAAGCGATGCCAATTCTCAAAATGACTCACAACCTGAGTTAGGTTCCAGGCAACGCACTTTGGAAGCTGAAGCATCTCAGAATGGTAACTCTATGCATGTTACTCAAAATGGGGGGCCTAATACTCAAGCAATGGCTGTCATTCCATTGGCAGTTGCTGGGGCTCCAGGAGTCGTTCCTGGTCCCACGACCAACTTAAACATTGGAATGGACTATTGGGGTTCATCCACTATCCCTGCATTGCGTGGAAAGGTTCCATCAACTCCAGGTGCTGGAGGATTGGTTACTGCTGGATCTCGGGATAGCGTACAGTCACAGGTTTGGTTGCAGGATGAGAGAGAGCTTAAAAGACAGAGAAGAAAGCAATCAAACAGAGAATCTGCACGACGATCCCGATTACGCAAGCAGGCAGAATGTGATGAACTAGCACACCGAGCTGAAGCCTTACAAGAAGAAAATGCCAATCTCAGGTCTGAAGTGAACCGGATAAGGAGTGAATATGAACAACTACTTTCCGAGAATGCTTCTTTGAAGGAAAGACTTGGGGAGGTTCCGGGAACTGAAGACGTAAGGGCCAGCAGGAATGGCCAGCATTCAAGTAACGAAACCACACAACTTACAGAGTCAGAGGCTGTACAAGGTGGTAACAAGAATTGA 1212 48.35 MSSSEMEKPPKDKETKTTPPTTQEQTSTTSAGTVNPDWSGFQAYSPIPPHGFLASSPQAPHPYMWGVQHIMPPYGTPPHPYVAMYPPGGIYAHPSIPPGSYPFSPFAMPSPNGITEASGNTAGSLEGEVKPPEVKEKLPIKRSKGSLGSLNMITGNNNELGKTSGTSANGAYSKSGESASEGTSEGSDANSQNDSQPELGSRQRTLEAEASQNGNSMHVTQNGGPNTQAMAVIPLAVAGAPGVVPGPTTNLNIGMDYWGSSTIPALRGKVPSTPGAGGLVTAGSRDSVQSQVWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAHRAEALQEENANLRSEVNRIRSEYEQLLSENASLKERLGEVPGTEDVRASRNGQHSSNETTQLTESEAVQGGNKN 403
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17017979 17023382 - MC10g1350 Mch10g1695 678788
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1695 403 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 304 319 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g1695 403 MobiDBLite consensus disorder prediction 377 403 - -
Mch10g1695 403 Coils Coil 317 365 - -
Mch10g1695 403 MobiDBLite consensus disorder prediction 19 40 - -
Mch10g1695 403 Gene3D - 300 354 - -
Mch10g1695 403 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 299 362 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g1695 403 SMART brlzneu 297 361 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g1695 403 MobiDBLite consensus disorder prediction 118 226 - -
Mch10g1695 403 MobiDBLite consensus disorder prediction 299 322 - -
Mch10g1695 403 MobiDBLite consensus disorder prediction 147 226 - -
Mch10g1695 403 PANTHER G-BOX-BINDING FACTOR 3-RELATED 23 387 IPR044827 GO:0003700(InterPro)|GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0006355(InterPro)|GO:0043565(InterPro)|GO:0043565(PANTHER)
Mch10g1695 403 Pfam Disordered region downstream of MFMR 136 262 - -
Mch10g1695 403 MobiDBLite consensus disorder prediction 1 42 - -
Mch10g1695 403 CDD bZIP_plant_GBF1 302 352 IPR045314 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g1695 403 MobiDBLite consensus disorder prediction 359 403 - -
Mch10g1695 403 MobiDBLite consensus disorder prediction 1 18 - -
Mch10g1695 403 Pfam G-box binding protein MFMR 1 97 IPR012900 -
Mch10g1695 403 SUPERFAMILY Leucine zipper domain 300 356 IPR046347 GO:0003700(InterPro)|GO:0006355(InterPro)
Mch10g1695 403 Pfam bZIP transcription factor 297 359 IPR004827 GO:0003700(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1695 Mch-Chr10:17017979 Mch5g0446 Mch-Chr5:3012937 2.62E-24 dispersed
Mch1g1486 Mch-Chr1:16380469 Mch10g1695 Mch-Chr10:17017979 4.95E-35 transposed
Mch10g1695 Mch-Chr10:17017979 Mch6g2213 Mch-Chr6:24410228 4.52E-148 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42523 PF16596 MFMR_assoc 1.20E-49 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1695 K09060 - csv:101206627 659.833