Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1717 ATGCAGAGTAAAAGAGGGAGGAAGATGTTTACATGCATAGCATGTACGAAACAGACAGACGAGGGGGGAGAGGATGGGGGAGGTGCGCGTGGGAGTGGCACGCCGAGTACAAAGGAAGCCGTCAAAAGCCTGACAACGCAGATAAAGGATATGGCGTTGAAATTCTCTGGTGCTTATAGGCAGTGCAAGCCCTGTACTGGCTCCAGTAGCTACAAGAAAGGACAGCGACCTTACCCAGATTTCGACACTGCTTCAGAAGGGGTGCCATATCCCTACATAGGAGGGGCAAGTGCGAGTTCGACACCTGCCTGGGACTTCCCCCCGGTCAATCGCCACCCACACCCAAGATCTGACTCAAGATTTAAAGGGGTTTTCAGAGGTGACCAGACCCCTGGAGCCGATTCCACCATTTCGGCGTGTGACGTGGTGCTTGAGGATGAGGATGAGCCCAAAGAGTGGATGGCACAGGTGGAGCCTGGTGTTCACATTACTTTTGTGTCCCTACCCAATGGCGGCAATGATTTAAAACGGATTCGTTTCAATCGAGAAATGTTCAACAAATGGCAAGCTCAGCGATGGTGGGGCGAGAACTATGACAGAATAACGGAGCTCTACAATGTCCAGAGATTCAACCAACAAGCTCTTCATACGCCACCAAGAACTGAGGACGGGAGGGATTCTTCTTACTCAAGAATGGGACGGGATAGTCCGATGACTTCGGCGAACAAAGATTGGACGCCGAGAAACTATAAACCCTCTGGAAGTAAAGGTTACTTTCCATCTGATCAGCATTTTGATCAGGGAAGCAGTCACCATTATGCAGGATCAAGCGCCTATCCCGCAGGCAGCGCAAAAGGTGATATGTCATCAATGGAAGCATCACGCACGACCACCTCTTCTAGAGATGAACCTTCGGTTTCCATTAGCAATGCAAGCGACATCGAGGCAGAGTGGGTCGAGGAAGATGAACCAGGGGTGTACATTACAATCAGACAGCTTGTTGATGGCACTAGAGAGCTTCGTCGCGTCAGATTCAGCCGTGAACGGTTCGGGGAGGTGAATGCGAAGCAGTGGTGGGAACAGAACAGGGAGAGAATCCAAGCTCAATACCTATAA 1116 50.72 MQSKRGRKMFTCIACTKQTDEGGEDGGGARGSGTPSTKEAVKSLTTQIKDMALKFSGAYRQCKPCTGSSSYKKGQRPYPDFDTASEGVPYPYIGGASASSTPAWDFPPVNRHPHPRSDSRFKGVFRGDQTPGADSTISACDVVLEDEDEPKEWMAQVEPGVHITFVSLPNGGNDLKRIRFNREMFNKWQAQRWWGENYDRITELYNVQRFNQQALHTPPRTEDGRDSSYSRMGRDSPMTSANKDWTPRNYKPSGSKGYFPSDQHFDQGSSHHYAGSSAYPAGSAKGDMSSMEASRTTTSSRDEPSVSISNASDIEAEWVEEDEPGVYITIRQLVDGTRELRRVRFSRERFGEVNAKQWWEQNRERIQAQYL 371
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17175033 17180197 + MC10g1369 Mch10g1717 678810
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1717 371 MobiDBLite consensus disorder prediction 111 133 - -
Mch10g1717 371 MobiDBLite consensus disorder prediction 260 276 - -
Mch10g1717 371 Pfam Transcription factor BRX N-terminal domain 32 65 IPR027988 -
Mch10g1717 371 PANTHER PROTEIN BREVIS RADIX-LIKE 1 9 371 IPR044532 -
Mch10g1717 371 MobiDBLite consensus disorder prediction 289 309 - -
Mch10g1717 371 MobiDBLite consensus disorder prediction 18 40 - -
Mch10g1717 371 Pfam Transcription factor regulating root and shoot growth via Pin3 151 205 IPR013591 -
Mch10g1717 371 Pfam Transcription factor regulating root and shoot growth via Pin3 315 370 IPR013591 -
Mch10g1717 371 ProSiteProfiles BRX domain profile. 151 206 IPR013591 -
Mch10g1717 371 ProSiteProfiles BRX domain profile. 316 371 IPR013591 -
Mch10g1717 371 MobiDBLite consensus disorder prediction 212 309 - -
Mch10g1717 371 MobiDBLite consensus disorder prediction 232 249 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1717 Mch-Chr10:17175033 Mch8g3237 Mch-Chr8:34379942 1.20E-96 dispersed
Mch10g1717 Mch-Chr10:17175033 Mch9g0230 Mch-Chr9:1720610 2.87E-101 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1717 - - - 0.0