Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Mch10g1720 | ATGGCAGCGTTAATGGCGCCGTATAAGCTGACGGACGGAGCAGTGATGGTGATCTGCAAGAGGGAGCCGACAGCAGAGATGTTCCAGCCGATTGTTCAAGTATTTGAGTTGAAATTGGTTAACACTTCGCAGCAGTCAGGCAACGAGAGGTATAGATTGTTGCTTTCTGATGGAACCCATTTCCAACAAGGAATGCTGGGCACTCAGCTCAATGGATTGGTTAAATCTGGGAAGTTACAGAAAGGTTCTGTCGTTCATTTGAAGCAGTATGTTTGTAACCCCGTTCAAGATCGCCTGATTATAATTGTCATCAAGTTGGATGTTCTAGTGGATGTGTGTGAAATTATTGGCGAGCCTGTACAAGCAACGAGGTCAGTAATAGCAGGTGCAAGTGGAAATCCCCAATCCTCTGTGGGTCCTTCACCCAACGGTGGAATGGTTGGTAAGACGAATGTATCTGGTGTGTCTTTTGAACAGCCCAACGTGATTCAATCGCATGTGGGCTCTTTTTCTAACAATCCTGAGTCTGGAAGATACACTGCATCAATTGCACCTCCTCTTTACTCTAATATGGATCCTGGAACAAGGTTTAACGGGCCATCTTCTTTAAGTGGGTCATATGGTGATCAGAAGATGGCATATCAAAACAATGAATCAGATATTCCAAGGCCTCCTCTAAATGCTTATTCCCGTCCTCAGCCAACATATCAGCAGCCACCTCCAATGTACAGTAATAGAGGACCAGTAGCAAAAAACGAAGCTACCCCAAGGATAATGCCTATTGCTGCTCTGAACCCTTACCAAGGAAGGTGGACAATAAAGGCTCGAGTTACATCAAAAAAAGAACTTAAGCACTACAATAATCCTCGTGGGGAGGGGAAAGTGTTTTCATTTGATCTTCTTGATTCCTATGGTGGAGAAATACGGGTAACATGCTTCAATACAGTAGCCGATCAGTTTTACAACCAGATCGAATCTGGTAAAATCTACTTCATTTCTAATGGAACTTTGAAACCTGCTCAAAAGAACTTTAATCATCTAAAAAACGACTTAGAAATATTTCTTGAGAGCACATCAACACTCCAACCTTGCTTTGAGGATGACCAATCAATCCCCCAACAACAGTTCCATTTCCGTCAGATTAGTGAGATTGAAGGCATGGACAGCAACACTGTTGTAGATGTAATTGGTGTTGTTTCCTCCATTAATCCTTCAACTTCTTTAATGAGAAAAAATGGTATTGAGACTCAGAAGAGATCCCTTCAGTTGAAGGATATGTCTGGCCGAAGTGTTGAGTTAACTCTGTGGGGAAACTTCTGTCAAGCAGAAGGGCAAAGATTGCAGAATATGTGTGACTCGGGGCTGTTCCCAGTTTTGGCTGTGAAATCTAGTAGAGTGAGCGACTTCAATGGGAAGGCAGTGGGGACCATTTCAACCAGTCAGCTTTTTGTTGAGCCAGACTTTCCCGAGGCTCGTAGGCTGAGGGACTGGTTTGAGAAGGAAGGGAGGAGTACTCCTTCTGTCTCTTTATCGAGGGAAGTTTCTACTGTGGGCAGGACCGATGTCCGTAAGACCATATCTCAAATCAAAGATGAGAGGTTAGGAACCTCTGAGAAGCCAGATTGGATTACTGTTAGTGCAACTGTTTCATTCATCAAGGTCGACAGCTTCTGTTACACGGCATGTCCTATCCTGATTGGGGACCGACAATGCAACAAAAAGGTTGCGAATAATGGAGATGGAAAATGGAGATGTGATAGGTGTGATCAGTCCGTTGAGGAATGTGACTACAGGTACATACTCCAGCTACAAATACAGGACCATACTGGCTTAACTTGGGTAACTGCATTTCAAGAAGGCGGTGAGGAGATCATGGGCATACCTGCAAAAAGACTGTATTTTTTGAAATACGAAGAGCAAGATGATGAGAAATTTGCAGAAATCATCCGTAAGGTCCTCTTTACAAAATTCATTATGAAGTTGAAAATAAAGGAAGAGACTTTCAGTGATGAATCGCGAGTAAAGTCAACAGTGGTGAAAGCAGATAGTGTAAATTTTTCAACAGAGTCCAGGTTTCTCCTAGATTTGATGGAAAAGCATAGGGCAGAGAACCCTAGTTCTATTACCCCAAAGGCAGAACCCGGACTTCACAACCCTGGAGCAGTGAATGTTGGCGGTGGACAGTTCGTGTCACCCATTCGAAATAGTAGCAATGTTGGCAGAGAATATGGTACTCCAAACCAAGGTATTCAGCTCGGGAACCAGTACAACAGTTCTAGGCTCACTCCATCCATGCCGCTTAACTCGAACATGTACTGCAACAGCTGCGGGAGCTCCGGTCACAGCTCTATGAACTGCCCGAGTATCATGAGCGGTCCTACGCATCCCGTTGGAGGGGGGATGTATTCAAATAGAGCTTCTGGCCCTACTGGTGGTGCCTCTGGTGAATGCTTCAAATGCCATCAGACAGGGCACTGGGCTAGGGATTGCCCTGGTTTGGCCTCTGTCCCTCCCGCTTATGGTAGCAGTGGATTCACAGCCAGGTGA | 2547 | 44.88 | MAALMAPYKLTDGAVMVICKREPTAEMFQPIVQVFELKLVNTSQQSGNERYRLLLSDGTHFQQGMLGTQLNGLVKSGKLQKGSVVHLKQYVCNPVQDRLIIIVIKLDVLVDVCEIIGEPVQATRSVIAGASGNPQSSVGPSPNGGMVGKTNVSGVSFEQPNVIQSHVGSFSNNPESGRYTASIAPPLYSNMDPGTRFNGPSSLSGSYGDQKMAYQNNESDIPRPPLNAYSRPQPTYQQPPPMYSNRGPVAKNEATPRIMPIAALNPYQGRWTIKARVTSKKELKHYNNPRGEGKVFSFDLLDSYGGEIRVTCFNTVADQFYNQIESGKIYFISNGTLKPAQKNFNHLKNDLEIFLESTSTLQPCFEDDQSIPQQQFHFRQISEIEGMDSNTVVDVIGVVSSINPSTSLMRKNGIETQKRSLQLKDMSGRSVELTLWGNFCQAEGQRLQNMCDSGLFPVLAVKSSRVSDFNGKAVGTISTSQLFVEPDFPEARRLRDWFEKEGRSTPSVSLSREVSTVGRTDVRKTISQIKDERLGTSEKPDWITVSATVSFIKVDSFCYTACPILIGDRQCNKKVANNGDGKWRCDRCDQSVEECDYRYILQLQIQDHTGLTWVTAFQEGGEEIMGIPAKRLYFLKYEEQDDEKFAEIIRKVLFTKFIMKLKIKEETFSDESRVKSTVVKADSVNFSTESRFLLDLMEKHRAENPSSITPKAEPGLHNPGAVNVGGGQFVSPIRNSSNVGREYGTPNQGIQLGNQYNSSRLTPSMPLNSNMYCNSCGSSGHSSMNCPSIMSGPTHPVGGGMYSNRASGPTGGASGECFKCHQTGHWARDCPGLASVPPAYGSSGFTAR | 848 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 10 | 17201292 | 17206313 | - | MC10g1372 | Mch10g1720 | 678813 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Mch10g1720 | 848 | FunFam | Replication protein A subunit | 509 | 700 | - | - | |
| Mch10g1720 | 848 | Gene3D | - | 509 | 700 | IPR012340 | - | |
| Mch10g1720 | 848 | ProSiteProfiles | Zinc finger CCHC-type profile. | 817 | 831 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Mch10g1720 | 848 | FunFam | Replication protein A subunit | 9 | 123 | - | - | |
| Mch10g1720 | 848 | FunFam | Replication protein A subunit | 257 | 367 | - | - | |
| Mch10g1720 | 848 | FunFam | Replication protein A subunit | 370 | 508 | - | - | |
| Mch10g1720 | 848 | CDD | RPA1N | 13 | 110 | IPR007199 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro) | |
| Mch10g1720 | 848 | Pfam | Replication protein A OB domain | 381 | 484 | IPR031657 | - | |
| Mch10g1720 | 848 | SUPERFAMILY | Nucleic acid-binding proteins | 8 | 117 | IPR012340 | - | |
| Mch10g1720 | 848 | Gene3D | - | 370 | 508 | IPR012340 | - | |
| Mch10g1720 | 848 | Gene3D | - | 8 | 123 | IPR012340 | - | |
| Mch10g1720 | 848 | Pfam | Replication factor-A protein 1, N-terminal domain | 10 | 110 | IPR007199 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro) | |
| Mch10g1720 | 848 | SUPERFAMILY | Retrovirus zinc finger-like domains | 800 | 835 | IPR036875 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Mch10g1720 | 848 | CDD | RPA1_DBD_B | 392 | 499 | - | - | |
| Mch10g1720 | 848 | Gene3D | - | 769 | 835 | - | - | |
| Mch10g1720 | 848 | PANTHER | REPLICATION FACTOR A 1, RFA1 | 260 | 676 | IPR004591 | GO:0000724(PANTHER)|GO:0003677(InterPro)|GO:0003684(PANTHER)|GO:0005634(InterPro)|GO:0005662(PANTHER)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006289(PANTHER)|GO:0006310(InterPro)|GO:0007004(PANTHER)|GO:0043047(PANTHER)|GO:0051321(PANTHER) | |
| Mch10g1720 | 848 | MobiDBLite | consensus disorder prediction | 191 | 210 | - | - | |
| Mch10g1720 | 848 | Pfam | OB-fold nucleic acid binding domain | 271 | 356 | IPR004365 | GO:0003676(InterPro) | |
| Mch10g1720 | 848 | ProSiteProfiles | Zinc finger CCHC-type profile. | 773 | 788 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Mch10g1720 | 848 | Gene3D | - | 257 | 366 | IPR012340 | - | |
| Mch10g1720 | 848 | SMART | c2hcfinal6 | 816 | 832 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Mch10g1720 | 848 | SMART | c2hcfinal6 | 772 | 788 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Mch10g1720 | 848 | SUPERFAMILY | Nucleic acid-binding proteins | 257 | 369 | IPR012340 | - | |
| Mch10g1720 | 848 | CDD | RPA1_DBD_C | 526 | 699 | IPR047192 | - | |
| Mch10g1720 | 848 | NCBIfam | replication factor-a protein 1 (rpa1) | 219 | 699 | IPR004591 | GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006260(InterPro)|GO:0006281(InterPro)|GO:0006310(InterPro) | |
| Mch10g1720 | 848 | Pfam | Replication factor-A C terminal domain | 542 | 693 | IPR013955 | - | |
| Mch10g1720 | 848 | MobiDBLite | consensus disorder prediction | 194 | 210 | - | - | |
| Mch10g1720 | 848 | Pfam | Zinc knuckle | 816 | 831 | IPR001878 | GO:0003676(InterPro)|GO:0008270(InterPro) | |
| Mch10g1720 | 848 | SUPERFAMILY | Nucleic acid-binding proteins | 523 | 700 | IPR012340 | - | |
| Mch10g1720 | 848 | CDD | RPA1_DBD_A | 260 | 363 | - | - | |
| Mch10g1720 | 848 | SUPERFAMILY | Nucleic acid-binding proteins | 376 | 504 | IPR012340 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Mch10g1720 | Mch-Chr10:17201292 | Mch8g3235 | Mch-Chr8:34368673 | 3.21E-242 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Mch10g1720 | K07466 | - | csv:101211358 | 1440.25 |