Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1743 ATGGGCAGGATGGGAGGTAAGCTCAGGTTTTACAGCGCCAATTCTAGCGACTACAAGCTTCTCGAGGAGATTGGTTATGGTGCCAGTGCTACGGTTTTTAGAGCGATCTACACTCCGTCTAATGAAGTTGTGGCCATCAAGTGTTTGGATCTTGATCGCTGCAATAGTAATCTTGATGATATACGTAGGGAGGCTCAAACAATGAGTTTGATAGATCATCCGAACCTTGTAAGGGCTTATTGTTCATTTGTTGTTGAACGAAACCTTTGGGTTGTCATGCCATTCATGGCAGAGGGTTCTTGTTTGCACCTAATAAAGACAGCATACTCAGATGGATTTGAAGAGGTTGCTATTGGTTCTATCCTGAAAGAAACTCTTAAAGCTTTGGAGTACCTTCACCGCCAGGGACACATACATCGGGATGTGAAGGCTGGAAATATACTGCTTGATAGTAATGGGGCTGTGAAGCTTGCTGATTTTGGTGTTTCAGCTTGCATGTTTGATACAGGTGATAGACAGCGCTCCAGAAATACCTTTGTGGGAACCCCATGCTGGATGGCACCGGAGGTATTGCAACCAGGAACGGGATATAATTCCAAGGCTGATATTTGGTCCTTTGGTATAACAGCATTGGAGTTGGCTCATGGTCATGCACCATTTTCTAAATATCCTCCAATGAAGGTGCTCCTTATGACAATACAAAATGCTCCTCCTGGGCTAGATTACGATAGAGATAAAAAGTTCTCTAAGTCTTTTAAAGAAATGGTTGCAATGTGCCTGGTGAAAGATCAAACCAAGAGGCCAACAGCTGAGAAACTTTTAAAGCACTCCTTTTTCAAGAATGCTAAGCCTCCAGAGCTTTCTTTGAAGAAATTATTTGCTAACTTGCCTCCTCTTTCACACCGTGTAAAGGACCTGCAGCTTAAAGATGCTGCCCAGCTAGCCTTAAAGAAAATGCCTTCAGCAGAGCAAGAAGCACTATCACAGAGTGAGTACCAGCGAGGAGTTAGTGCATGGAACTTTGATGTCGAGGATTTGAAAGCCCAAGCTTCCTTGGTGAATGATGATATGCCAGAGATGAGGGAAGAGGAGGAGAAAACAAATTCTTGTAGTGTTAAGGATGCTATTTGTCCTCAATCTAGTTTGAGGAATTTCAATTCATGTAGTGAATTATCTCGGGATGAGCATGGATTAGGGGCAAGTGGTCAGGGATTGGCACAAGTGGAGTGCTTGAGCAAAAAGGGAAACTTTATGGAAAGTGATATGCTGAAATCTGGGTTCCAAGAAAAAACCGGATGGAAGAGAAATGGAACGAGCACTGAAGCAGAAGCATCCACCTCTGGCCAAGACAATGTACAAGGCAAGACTAAAACCCAAATGCCAAAAGGTCGTCAAACTCAAAGTGGTCCACTTCTACCTGGTATTGTGCTTAGTCATTCTTTATCAGAAAGAGTGCGAGGCTCTGAGAGGTTTGATTCTGAAAGTCAACCATCTACTGAAAAGAATCGTCGAGAAGCACGGCAAGCTCCAAGCTTCAGTGGTCCACTGATGCTGCCAAACCGAGCCTCGGCAAACAGCCTATCAGCTCCCATAAAGCCTTCTGGAGGGTTTCGAGATTCAATGGATGACAAATCAAAAGCTAATCTTGTGCAAATTAAGGGACGTTTTTCAGTAACATCAGAGAACCTAGATCTCGTAAAGGATATTCCATTGAGTACGGTCTCACGCCGGTCTTCACAGAACTCGCCTCTACGAAAGTCAGCTAGCGTTGGTGATTGGATATTTGATTCCAAGCAGCCTGTCAGCCTTTCTCCCAAGGAAGCTTGCAACATCAACATGCCCACATCAGTTCTAATGCCTCATCTTCAGAATCTTTTCCATCAGACCTCAATTCAACAGGATCTTATAGTGAGCTTATTGAATAGCTTACAAACATCAGACGTGGTTGATGCTACTCAAAATGGAAAGTTGCCTCCACTGCCTCGAAGCTCGGAGAACAATGGAAGTAATTCCTTTGTTTGGCAGGCTGAATCAGCCGCTGTTGAGAGAGAGCGTTTACTGATTCGGAAGGTCTCCGAACTTCAAGCTAGAATGACGCATTTGACCTATGAATTGACTGCTGAAAAGTTGAAATACATTCAATTACAAGAGCAGTTCAACTCAACATCTGGTCATGACGAAAATGAGATCAAGAGGGAAGAGAACGTC 2208 43.8 MGRMGGKLRFYSANSSDYKLLEEIGYGASATVFRAIYTPSNEVVAIKCLDLDRCNSNLDDIRREAQTMSLIDHPNLVRAYCSFVVERNLWVVMPFMAEGSCLHLIKTAYSDGFEEVAIGSILKETLKALEYLHRQGHIHRDVKAGNILLDSNGAVKLADFGVSACMFDTGDRQRSRNTFVGTPCWMAPEVLQPGTGYNSKADIWSFGITALELAHGHAPFSKYPPMKVLLMTIQNAPPGLDYDRDKKFSKSFKEMVAMCLVKDQTKRPTAEKLLKHSFFKNAKPPELSLKKLFANLPPLSHRVKDLQLKDAAQLALKKMPSAEQEALSQSEYQRGVSAWNFDVEDLKAQASLVNDDMPEMREEEEKTNSCSVKDAICPQSSLRNFNSCSELSRDEHGLGASGQGLAQVECLSKKGNFMESDMLKSGFQEKTGWKRNGTSTEAEASTSGQDNVQGKTKTQMPKGRQTQSGPLLPGIVLSHSLSERVRGSERFDSESQPSTEKNRREARQAPSFSGPLMLPNRASANSLSAPIKPSGGFRDSMDDKSKANLVQIKGRFSVTSENLDLVKDIPLSTVSRRSSQNSPLRKSASVGDWIFDSKQPVSLSPKEACNINMPTSVLMPHLQNLFHQTSIQQDLIVSLLNSLQTSDVVDATQNGKLPPLPRSSENNGSNSFVWQAESAAVERERLLIRKVSELQARMTHLTYELTAEKLKYIQLQEQFNSTSGHDENEIKREENV 736
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17343255 17354849 - MC10g1392 Mch10g1743 678836

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1743 736 MobiDBLite consensus disorder prediction 431 466 - -
Mch10g1743 736 Gene3D Phosphorylase Kinase; domain 1 8 95 - -
Mch10g1743 736 Gene3D Transferase(Phosphotransferase) domain 1 99 330 - -
Mch10g1743 736 FunFam serine/threonine-protein kinase BLUS1-like isoform X2 99 329 - -
Mch10g1743 736 Pfam Protein kinase domain 18 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g1743 736 ProSiteProfiles Protein kinase domain profile. 18 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g1743 736 MobiDBLite consensus disorder prediction 428 519 - -
Mch10g1743 736 SMART serkin_6 18 279 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch10g1743 736 SUPERFAMILY Protein kinase-like (PK-like) 16 335 IPR011009 -
Mch10g1743 736 Coils Coil 343 363 - -
Mch10g1743 736 FunFam Serine/threonine-protein kinase BLUS1 7 95 - -
Mch10g1743 736 ProSitePatterns Protein kinases ATP-binding region signature. 24 47 IPR017441 GO:0005524(InterPro)
Mch10g1743 736 CDD STKc_OSR1_SPAK 16 279 - -
Mch10g1743 736 MobiDBLite consensus disorder prediction 483 507 - -
Mch10g1743 736 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 11 715 IPR047173 GO:0043539(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1743 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1743 Mch-Chr10:17343255 Mch8g1508 Mch-Chr8:11515694 2.35E-159 dispersed
Mch10g1743 Mch-Chr10:17343255 Mch4g2219 Mch-Chr4:23817061 3.10E-169 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch11g1051 . 1 686 MAP Kinase Kinase Kinase Kinase AT1G53165 62.2 6.8e-216 747.3
Mch11g1051 . 1 686 MAP Kinase Kinase Kinase Kinase AT3G15220 63.0 1.7e-222 769.2
Mch9g2066 . 268 533 MAP Kinase Kinase Kinase Kinase AT3G15220 51.3 4.3e-69 259.6
Mch9g2066 . 1 845 MAP Kinase Kinase Kinase Kinase AT1G69220 57.6 7.7e-243 837.0
Mch11g1051 . 23 267 MAP Kinase Kinase Kinase Kinase AT1G69220 52.0 6.2e-67 252.7
Mch4g2219 . 1 659 MAP Kinase Kinase Kinase Kinase AT5G14720 67.1 7.6e-252 866.7
Mch8g1508 . 24 630 MAP Kinase Kinase Kinase Kinase AT5G14720 55.1 7.2e-194 674.1
Mch10g1743 . 9 726 MAP Kinase Kinase Kinase Kinase AT4G24100 63.6 1.3e-241 832.8
Mch10g1743 . 11 727 MAP Kinase Kinase Kinase Kinase AT4G10730 63.9 6.0e-244 840.5
Mch8g1055 . 4 494 MAP Kinase Kinase Kinase Kinase AT1G70430 51.9 3.7e-133 472.2
Mch10g1743 . 5 353 MAP Kinase Kinase Kinase Kinase AT1G70430 59.0 9.8e-118 421.0
Mch8g1055 . 1 696 MAP Kinase Kinase Kinase Kinase AT1G79640 59.1 6.2e-214 740.7
Mch8g1508 . 30 377 MAP Kinase Kinase Kinase Kinase AT1G79640 67.8 1.5e-143 506.9
Mch4g2219 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 59.8 1.7e-104 376.7
Mch8g1508 . 24 350 MAP Kinase Kinase Kinase Kinase AT1G23700 56.1 1.3e-96 350.5
Mch8g1055 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.5 1.0e-88 324.3
Mch10g1743 . 15 306 MAP Kinase Kinase Kinase Kinase AT1G23700 50.8 6.3e-75 278.5
Mch5g0066 . 19 500 MAP Kinase Kinase Kinase Kinase AT4G14480 55.5 3.9e-141 498.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005064 3 0 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 3 2 1 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77032 PF00069 Pkinase 1.80E-61 CL0016 Mch PK