Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1760 ATGGCTTCCATTTCTTTCCCTCTTCTTTCCCTCTTCCTTTGTTCCCCTTTATTCTCAGGTGTGGATTCAGCAACTTTCTCTATTTTGAACAAGTGTGATTACCCGGTGTGGCCGGGGGTTTTGTCCGGGGCCGGGACGCCGCCGCTTGCCACGACCGGCTTCGCCCTCCAGCCCGGTGAGTCCAACGCCCTCGCCGTGCCGCCTTCCTGGTCCGGCCGCATCTGGGGCCGGACTTATTGCTCCCAAGATGCTGCCGGGAGATTCTCCTGCGCCACCGCGGATTGCGGCTCGGGCGCCGTGGAGTGCAACGGCGCCGGTGCAACCCCGCCCGCCACCCTGGCGGAGTTCACGCTGAATGGTGCAGGCGGGCTTGATTTCTACGATGTCAGCCTTGTTGATGGCTACAACGTGCCCATGTTAATCACCCCACAGGGTGTAGGCAACTGCACGACGACTGGGTGCACGGTGGACTTGAACAGCGAGTGCCCCATGGAGTTGAGGGTGGTGGTGAGCGGCGGGGACGGGCGGAGCGTGGCGTGCAAAAGCGCGTGTGAGGCGTTCGGGGAGGCACAGTATTGCTGCAGTGGGGAGTATGGGAACCCGAATACGTGCCGGCCGACGTCGTACTCGGAGCTGTTCAAGGCGGCGTGCCCGTCGGCTTACAGCTACGCATACGACGACGGGAGCAGCACCTTCACCTGCGCCTCCCCCGCCGATTACCTTATCACTTTCTGCCCTTCTCCCACGACCAGCTTGAAATCATCAAACGGGCAGTACCCGCGGGCAGTGGACGTCTCAAGAGCCGGGCATCACGGCACGCCGTTAACGTCCGTAGCCGTTATCTCCGCCGTTACGGCAGCTCTA 864 62.04 MASISFPLLSLFLCSPLFSGVDSATFSILNKCDYPVWPGVLSGAGTPPLATTGFALQPGESNALAVPPSWSGRIWGRTYCSQDAAGRFSCATADCGSGAVECNGAGATPPATLAEFTLNGAGGLDFYDVSLVDGYNVPMLITPQGVGNCTTTGCTVDLNSECPMELRVVVSGGDGRSVACKSACEAFGEAQYCCSGEYGNPNTCRPTSYSELFKAACPSAYSYAYDDGSSTFTCASPADYLITFCPSPTTSLKSSNGQYPRAVDVSRAGHHGTPLTSVAVISAVTAAL 288
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17448613 17452733 + MC10g1405 Mch10g1760 678853
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1760 288 ProSitePatterns Thaumatin family signature. 86 102 IPR017949 -
Mch10g1760 288 PANTHER OS03G0233200 PROTEIN 14 246 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Mch10g1760 288 FunFam THAUMATIN-LIKE PROTEIN 1 24 246 - -
Mch10g1760 288 Gene3D Thaumatin 24 246 IPR037176 -
Mch10g1760 288 PIRSF PR5 1 286 IPR001938 -
Mch10g1760 288 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
Mch10g1760 288 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Mch10g1760 288 PRINTS Pathogenesis-related protein signature 236 245 IPR001938 -
Mch10g1760 288 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Mch10g1760 288 SUPERFAMILY Osmotin, thaumatin-like protein 24 247 IPR037176 -
Mch10g1760 288 ProSiteProfiles Thaumatin family profile. 23 246 IPR001938 -
Mch10g1760 288 CDD TLP-PA 25 245 - -
Mch10g1760 288 SMART tha2 26 246 IPR001938 -
Mch10g1760 288 Pfam Thaumatin family 30 246 IPR001938 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1760 Mch-Chr10:17448613 Mch8g0857 Mch-Chr8:6102803 4.54E-118 dispersed
Mch10g1760 Mch-Chr10:17448613 Mch10g1761 Mch-Chr10:17464234 6.27E-99 tandem
Mch10g0004 Mch-Chr10:33543 Mch10g1760 Mch-Chr10:17448613 2.89E-100 transposed
Mch10g1477 Mch-Chr10:14718420 Mch10g1760 Mch-Chr10:17448613 8.20E-41 transposed
Mch1g1590 Mch-Chr1:17070513 Mch10g1760 Mch-Chr10:17448613 1.94E-115 wgd
Mch10g1760 Mch-Chr10:17448613 Mch11g0107 Mch-Chr11:714752 3.93E-118 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1760 - - - 0.0