Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1771 ATGAGGAATAAAACCCACCACCTCCTTTGCCACTTTAAAAAAAGAAAACTCTGCCTTGAAAAAGTGGGAGGTGACATAGGGAGCAGTATATTTAAAAACCACCCAATTGCACACATTCTCTTCTTGACACATACACTCAGATTTACACCAAAACCAGACCCTTTCTGCAAAAATGTTTATTTTTTTATATTAGTATTAATGGCAGAAGAGGATACCCCCTCTGAAAGTTCTGAATCTTCTTCTTCTTCAACTCTCATCTCTCCAATGTCAACTCCCTTGAGGAAGGTGTTTTGTAGGATTTCTGGCCTTGCAACTTCTCTGAGAAGAAACGCAGCCCCTCACAGCAGAAGAATCTTTCACAGAGATGTTGAACAGCAAGAGTTTCAATATGCAAGTTCTCATTGTCTCTCTTCTTACTACAGTGTCTTTGTTGCTCGCCTTGCCATAATGGTGATGCTAGCTATTTTGATTGGGCTGCTGACAATACTCACGTGGCATTTCACAAAGAGCTATACAGCACAGTCACTGGACAGCTTAGCATACGGTCTACGCCACGAACTGCTGCAGCGCCCGATCCTACGGATGTGGGGTGTCTTGAATTCCACAGCTGAAATAACCACAGCTCAAGTTAAGCTCACAGAATATGTAATGAGGAAGTACAGCAAGCCTGCGAATCAAGCAGAGCAAGTTGAGTTGTATGAATCAATGAGGGACGTGACGTGGGCGTTGTTTGCGAGTCGAAAAGCTCTTAATGCCATAACTATCAATTACAAGAATGGCTTTGTCCAGGCATTCCATCGAGATCATAGAAGCAACAATACGTTTTATATTTACTCCGATCTTGCAAACTATTCCATCAGTGCCACTCAATCGTATGATATCAATCGGTTGTCGTCAGGCGATGGGTGGTCAGACCCACCCATACATGGCAATGTTTCTGCAAAATGGTACCGGGAACCGCTTGATCCTGTTAGTGGTGAGAAGATCGGGAAAGCGAGGCAGATCCCACCGGAGGACTTGATTAATATTCCTGGCATTTCACAGGTGGCAGATGGTGTTGCCTCATGGCATGTCACTGTGAGCAAGTACATGGATACACCATTGCTTTCAGCGGCTCTTCCTGTTTCTGATGCTTCAAATGAAAGCATAGTTGCAGTGGTGGGCGTTACGACTGCACTTTATAGCGTGGGCCAACTGATGAAGGAGCTTGTTGAGTTCCATAGTGGACATATTTATCTAACCTCTCAAGAGGGCTACTTGCTTGCTACATCAGCAAATGCTCCCCTGTTAACAAATACGTCAAGAGGTCCAAAGCTTATGATGGCTGCTGATTCTCAGGATGACGTGATTCGACTAGGAGCCGAGTGGTTACAGAAAACCTCTGGAAACAATTTTCCTCCAGGTCATGAGGTCCATGAAGAGAATGTCAAGCTTGGCGATCAGCAATATTACATTGACTCATTTTTTCTTAATCTGAAGAGGCTTCCTATTGTGGGGGTTGTCATCATTCCTAGACAATACATAATGGGAAAGGTAGATGAGAGAGCTTTCAAAACATTGGTTATACTGATTTCTGCATCCTTATGCATCTTAATTATTGGATGTCTATGCATTTTGATTCTGACAAAAGGAGTATCTAAGGAAATGAAACTAAGAGCAGAACTAATAAGCCATCTCGATGCAAGAAGAAGGGCAGAGGCATCTAGTAATTACAAGAGTCAGTTTCTTGCAAATATGAGTCATGAGCTGAGGACGCCGATGGCTGCAGTAATCGGACTGCTGGACATTCTTATGTGTGACGACTGTCTCAATAACGAACAATTTGCGACTGTTACTCAGATTAGAAAATGCTCGACAGCTCTACTCCGACTTCTCAACAACATTCTAGATCTAAGCAAGGTTGAATCCGGAAAGCTGGTTTTGGAAGATGCAGAGTTTGATCTGGGACGAGAACTTGAAGGGCTTGTCGATATGTTCTCTGTGCAATGCATTAACCACAATGTGGAGACTGTGTTGGATCTCTCTGATGATATGCCAAAATTAGTCCGAGGAGACTCAGGTCGAGTTGTACAAATATTCACGAATTTGATCAACAATTCTATAAAATTCACAACTGCTGGTCACATCATTCTTCGAGGGTGGTGCGAGACCTCTAATACTCTTAACGAAACAGGGAAGTTTTGTATTGATCAGAAGAAATCACGGTTTCCTAATCGGACAAAGATGAAACATGGAGACCCTACAAAGAATGCCTGCAAGAAAGATAAAAAAATGACCTTGTGGTTTGAACTTGATGACACTGGCTGTGGGATTGATCCAAGCAAATGGGAGTCTGTTTTTGAAAGCTTTGAGCAAGCCGATCCCTCAACAACCCGAACGCACGGTGGTACGGGTCTTGGACTATGCATCGTACGCACCTTGGTTCACAAGATGGGTGGAGAAATCAAGGTTGTAAAGAAGAACGGCCCGGGAACTTTAATGCGACTTTATTTGGTTCTCAGCACGCCTGTAGATTCCATGGATCATCACTGTCAACTTGATTTTGCGAAACATAATGCAGTGGTACTGCTTGCGCTCCGTGGCAACATGAGTCGATTAATCACATCGCAGTGGCTTTGTAAAATCAGACTGCGCACTTTAGAAGCCTCAGAGTGGAATGAATTGACACTAATTCTTCAGGAACTCTTTCATGCTAGAAGTTCAGAAACTAAAAAGGGATTTAGTCCACAGGATCCACTAGGTGAACCGTTACGAGCGGAGTTAATGAGAATTAAAGATATGAAAAGCCAAATATTCATCATCGTCGCCGATATAGGGATACTCGACTTGAGCACAGATATCTGGAAGGACCAACTTTACTTCCTCGACAAGTACTCTGGAAAAGCAAAATTTGCGTGGATGTTAAACCACGATACGCCCAATGCCATAAAGATGGAGCTCCGGGGAAAAGGGCACATTATAATGAACAATAAATCACTTTACAAAGCAAAAATTGTTCATATTATGGAAGCTGTTATGAAGGACAGAAATGTTGAATTGCAGAAGAAAAATGCTCTAAGAACTGCATCAAAAGAAGGGGACTATCACGAATGTCTTGAAATTGATTCCACTCAGTTTGAAACTGCAAGCTCTGATGATTCTGATGTATATGAACTTGGTAATTCCAACTCCAAGTTCGCAAAATTTCAAGTCCGAGATGACCATGAAGAAGAAACAATGGCGACAAAACCATGTCAGTCGCTATTTCCACCTGTTAACGATAGCTTGGTTGAGTTAACTCGTGTAAACTCGAGCGAGAGTAACATGAAAACCAGTGATCTCAGTGACGCGAGGCGAAACTCAACAAAGCCTCATTGTGAAAGTTCCGAATCTGATGGACAGAACTTGGGATGCAACTATCCTAAGAGCCAAGGAGAATCACATTCTAAGAACGTCCATGGTCAGAAATCTCTTGAAGGGCTACGCATTTTGCTTGCAGAAGATACACCGGTTCTACAAAGAGTAACGACCATAATGCTTGAAAAGATGGGAGCCGCAGTCATTACGGCAGGAGACGGGTTGCAGGCTGTAGAAGCTCTGAGTGCCATGCTCAGTGATGAAGAGCAAAGAAGGGAATGTCCCACAAGATATGATTTGATATTGATGGATTGCCAAATGCCGAAGATGGACGGGTATGAAGCAACAAAAGCAATTAGAAAGCTAGAAGCAGGAACGAGGCTTCATGTTCCGATTGTAGCGTTGACAGCCCACGCAATGTCGTCGGACGAAGCCAAATGCTTGGAGGTGGGAATGGATGCATACCTAACAAAGCCAATTGACTATAAGCTGATGGTATCCACCATACTTTCACTCACTAAAAGAAGAGTCTAG 3870 43.1 MRNKTHHLLCHFKKRKLCLEKVGGDIGSSIFKNHPIAHILFLTHTLRFTPKPDPFCKNVYFFILVLMAEEDTPSESSESSSSSTLISPMSTPLRKVFCRISGLATSLRRNAAPHSRRIFHRDVEQQEFQYASSHCLSSYYSVFVARLAIMVMLAILIGLLTILTWHFTKSYTAQSLDSLAYGLRHELLQRPILRMWGVLNSTAEITTAQVKLTEYVMRKYSKPANQAEQVELYESMRDVTWALFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLANYSISATQSYDINRLSSGDGWSDPPIHGNVSAKWYREPLDPVSGEKIGKARQIPPEDLINIPGISQVADGVASWHVTVSKYMDTPLLSAALPVSDASNESIVAVVGVTTALYSVGQLMKELVEFHSGHIYLTSQEGYLLATSANAPLLTNTSRGPKLMMAADSQDDVIRLGAEWLQKTSGNNFPPGHEVHEENVKLGDQQYYIDSFFLNLKRLPIVGVVIIPRQYIMGKVDERAFKTLVILISASLCILIIGCLCILILTKGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQFATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKLVRGDSGRVVQIFTNLINNSIKFTTAGHIILRGWCETSNTLNETGKFCIDQKKSRFPNRTKMKHGDPTKNACKKDKKMTLWFELDDTGCGIDPSKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVHKMGGEIKVVKKNGPGTLMRLYLVLSTPVDSMDHHCQLDFAKHNAVVLLALRGNMSRLITSQWLCKIRLRTLEASEWNELTLILQELFHARSSETKKGFSPQDPLGEPLRAELMRIKDMKSQIFIIVADIGILDLSTDIWKDQLYFLDKYSGKAKFAWMLNHDTPNAIKMELRGKGHIIMNNKSLYKAKIVHIMEAVMKDRNVELQKKNALRTASKEGDYHECLEIDSTQFETASSDDSDVYELGNSNSKFAKFQVRDDHEEETMATKPCQSLFPPVNDSLVELTRVNSSESNMKTSDLSDARRNSTKPHCESSESDGQNLGCNYPKSQGESHSKNVHGQKSLEGLRILLAEDTPVLQRVTTIMLEKMGAAVITAGDGLQAVEALSAMLSDEEQRRECPTRYDLILMDCQMPKMDGYEATKAIRKLEAGTRLHVPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMVSTILSLTKRRV 1289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17514777 17521124 + MC10g1415 Mch10g1771 678864
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1771 1289 FunFam Histidine kinase 1-like protein 559 638 - -
Mch10g1771 1289 CDD REC_hyHK_CKI1_RcsC-like 1156 1281 - -
Mch10g1771 1289 MobiDBLite consensus disorder prediction 1105 1119 - -
Mch10g1771 1289 Gene3D - 559 638 - -
Mch10g1771 1289 Pfam His Kinase A (phospho-acceptor) domain 572 637 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Mch10g1771 1289 PRINTS Bacterial sensor protein C-terminal signature 778 788 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Mch10g1771 1289 PRINTS Bacterial sensor protein C-terminal signature 760 774 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Mch10g1771 1289 PRINTS Bacterial sensor protein C-terminal signature 795 813 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Mch10g1771 1289 SMART HKATPase_4 684 835 IPR003594 -
Mch10g1771 1289 MobiDBLite consensus disorder prediction 1120 1144 - -
Mch10g1771 1289 Gene3D - 1132 1287 - -
Mch10g1771 1289 ProSiteProfiles Histidine kinase domain profile. 578 835 IPR005467 -
Mch10g1771 1289 SMART REC_2 1154 1281 IPR001789 GO:0000160(InterPro)
Mch10g1771 1289 MobiDBLite consensus disorder prediction 1094 1147 - -
Mch10g1771 1289 PANTHER TWO-COMPONENT HISTIDINE KINASE 109 840 IPR050736 -
Mch10g1771 1289 ProSiteProfiles Response regulatory domain profile. 1155 1285 IPR001789 GO:0000160(InterPro)
Mch10g1771 1289 Gene3D - 639 836 IPR036890 -
Mch10g1771 1289 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 626 831 IPR036890 -
Mch10g1771 1289 SMART HisKA_10 571 637 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Mch10g1771 1289 CDD HisKA 572 633 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Mch10g1771 1289 Pfam Response regulator receiver domain 1156 1280 IPR001789 GO:0000160(InterPro)
Mch10g1771 1289 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 559 638 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Mch10g1771 1289 SUPERFAMILY CheY-like 1152 1287 IPR011006 -
Mch10g1771 1289 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 684 832 IPR003594 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1771 Mch-Chr10:17514777 Mch8g2774 Mch-Chr8:30805227 3.31E-63 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42526 PF02518 HATPase_c 9.50E-23 CL0025 Mch TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1771 - - - 0.0