Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1771 ATGAGGAATAAAACCCACCACCTCCTTTGCCACTTTAAAAAAAGAAAACTCTGCCTTGAAAAAGTGGGAGGTGACATAGGGAGCAGTATATTTAAAAACCACCCAATTGCACACATTCTCTTCTTGACACATACACTCAGATTTACACCAAAACCAGACCCTTTCTGCAAAAATGTTTATTTTTTTATATTAGTATTAATGGCAGAAGAGGATACCCCCTCTGAAAGTTCTGAATCTTCTTCTTCTTCAACTCTCATCTCTCCAATGTCAACTCCCTTGAGGAAGGTGTTTTGTAGGATTTCTGGCCTTGCAACTTCTCTGAGAAGAAACGCAGCCCCTCACAGCAGAAGAATCTTTCACAGAGATGTTGAACAGCAAGAGTTTCAATATGCAAGTTCTCATTGTCTCTCTTCTTACTACAGTGTCTTTGTTGCTCGCCTTGCCATAATGGTGATGCTAGCTATTTTGATTGGGCTGCTGACAATACTCACGTGGCATTTCACAAAGAGCTATACAGCACAGTCACTGGACAGCTTAGCATACGGTCTACGCCACGAACTGCTGCAGCGCCCGATCCTACGGATGTGGGGTGTCTTGAATTCCACAGCTGAAATAACCACAGCTCAAGTTAAGCTCACAGAATATGTAATGAGGAAGTACAGCAAGCCTGCGAATCAAGCAGAGCAAGTTGAGTTGTATGAATCAATGAGGGACGTGACGTGGGCGTTGTTTGCGAGTCGAAAAGCTCTTAATGCCATAACTATCAATTACAAGAATGGCTTTGTCCAGGCATTCCATCGAGATCATAGAAGCAACAATACGTTTTATATTTACTCCGATCTTGCAAACTATTCCATCAGTGCCACTCAATCGTATGATATCAATCGGTTGTCGTCAGGCGATGGGTGGTCAGACCCACCCATACATGGCAATGTTTCTGCAAAATGGTACCGGGAACCGCTTGATCCTGTTAGTGGTGAGAAGATCGGGAAAGCGAGGCAGATCCCACCGGAGGACTTGATTAATATTCCTGGCATTTCACAGGTGGCAGATGGTGTTGCCTCATGGCATGTCACTGTGAGCAAGTACATGGATACACCATTGCTTTCAGCGGCTCTTCCTGTTTCTGATGCTTCAAATGAAAGCATAGTTGCAGTGGTGGGCGTTACGACTGCACTTTATAGCGTGGGCCAACTGATGAAGGAGCTTGTTGAGTTCCATAGTGGACATATTTATCTAACCTCTCAAGAGGGCTACTTGCTTGCTACATCAGCAAATGCTCCCCTGTTAACAAATACGTCAAGAGGTCCAAAGCTTATGATGGCTGCTGATTCTCAGGATGACGTGATTCGACTAGGAGCCGAGTGGTTACAGAAAACCTCTGGAAACAATTTTCCTCCAGGTCATGAGGTCCATGAAGAGAATGTCAAGCTTGGCGATCAGCAATATTACATTGACTCATTTTTTCTTAATCTGAAGAGGCTTCCTATTGTGGGGGTTGTCATCATTCCTAGACAATACATAATGGGAAAGGTAGATGAGAGAGCTTTCAAAACATTGGTTATACTGATTTCTGCATCCTTATGCATCTTAATTATTGGATGTCTATGCATTTTGATTCTGACAAAAGGAGTATCTAAGGAAATGAAACTAAGAGCAGAACTAATAAGCCATCTCGATGCAAGAAGAAGGGCAGAGGCATCTAGTAATTACAAGAGTCAGTTTCTTGCAAATATGAGTCATGAGCTGAGGACGCCGATGGCTGCAGTAATCGGACTGCTGGACATTCTTATGTGTGACGACTGTCTCAATAACGAACAATTTGCGACTGTTACTCAGATTAGAAAATGCTCGACAGCTCTACTCCGACTTCTCAACAACATTCTAGATCTAAGCAAGGTTGAATCCGGAAAGCTGGTTTTGGAAGATGCAGAGTTTGATCTGGGACGAGAACTTGAAGGGCTTGTCGATATGTTCTCTGTGCAATGCATTAACCACAATGTGGAGACTGTGTTGGATCTCTCTGATGATATGCCAAAATTAGTCCGAGGAGACTCAGGTCGAGTTGTACAAATATTCACGAATTTGATCAACAATTCTATAAAATTCACAACTGCTGGTCACATCATTCTTCGAGGGTGGTGCGAGACCTCTAATACTCTTAACGAAACAGGGAAGTTTTGTATTGATCAGAAGAAATCACGGTTTCCTAATCGGACAAAGATGAAACATGGAGACCCTACAAAGAATGCCTGCAAGAAAGATAAAAAAATGACCTTGTGGTTTGAACTTGATGACACTGGCTGTGGGATTGATCCAAGCAAATGGGAGTCTGTTTTTGAAAGCTTTGAGCAAGCCGATCCCTCAACAACCCGAACGCACGGTGGTACGGGTCTTGGACTATGCATCGTACGCACCTTGGTTCACAAGATGGGTGGAGAAATCAAGGTTGTAAAGAAGAACGGCCCGGGAACTTTAATGCGACTTTATTTGGTTCTCAGCACGCCTGTAGATTCCATGGATCATCACTGTCAACTTGATTTTGCGAAACATAATGCAGTGGTACTGCTTGCGCTCCGTGGCAACATGAGTCGATTAATCACATCGCAGTGGCTTTGTAAAATCAGACTGCGCACTTTAGAAGCCTCAGAGTGGAATGAATTGACACTAATTCTTCAGGAACTCTTTCATGCTAGAAGTTCAGAAACTAAAAAGGGATTTAGTCCACAGGATCCACTAGGTGAACCGTTACGAGCGGAGTTAATGAGAATTAAAGATATGAAAAGCCAAATATTCATCATCGTCGCCGATATAGGGATACTCGACTTGAGCACAGATATCTGGAAGGACCAACTTTACTTCCTCGACAAGTACTCTGGAAAAGCAAAATTTGCGTGGATGTTAAACCACGATACGCCCAATGCCATAAAGATGGAGCTCCGGGGAAAAGGGCACATTATAATGAACAATAAATCACTTTACAAAGCAAAAATTGTTCATATTATGGAAGCTGTTATGAAGGACAGAAATGTTGAATTGCAGAAGAAAAATGCTCTAAGAACTGCATCAAAAGAAGGGGACTATCACGAATGTCTTGAAATTGATTCCACTCAGTTTGAAACTGCAAGCTCTGATGATTCTGATGTATATGAACTTGGTAATTCCAACTCCAAGTTCGCAAAATTTCAAGTCCGAGATGACCATGAAGAAGAAACAATGGCGACAAAACCATGTCAGTCGCTATTTCCACCTGTTAACGATAGCTTGGTTGAGTTAACTCGTGTAAACTCGAGCGAGAGTAACATGAAAACCAGTGATCTCAGTGACGCGAGGCGAAACTCAACAAAGCCTCATTGTGAAAGTTCCGAATCTGATGGACAGAACTTGGGATGCAACTATCCTAAGAGCCAAGGAGAATCACATTCTAAGAACGTCCATGGTCAGAAATCTCTTGAAGGGCTACGCATTTTGCTTGCAGAAGATACACCGGTTCTACAAAGAGTAACGACCATAATGCTTGAAAAGATGGGAGCCGCAGTCATTACGGCAGGAGACGGGTTGCAGGCTGTAGAAGCTCTGAGTGCCATGCTCAGTGATGAAGAGCAAAGAAGGGAATGTCCCACAAGATATGATTTGATATTGATGGATTGCCAAATGCCGAAGATGGACGGGTATGAAGCAACAAAAGCAATTAGAAAGCTAGAAGCAGGAACGAGGCTTCATGTTCCGATTGTAGCGTTGACAGCCCACGCAATGTCGTCGGACGAAGCCAAATGCTTGGAGGTGGGAATGGATGCATACCTAACAAAGCCAATTGACTATAAGCTGATGGTATCCACCATACTTTCACTCACTAAAAGAAGAGTCTAG 3870 43.1 MRNKTHHLLCHFKKRKLCLEKVGGDIGSSIFKNHPIAHILFLTHTLRFTPKPDPFCKNVYFFILVLMAEEDTPSESSESSSSSTLISPMSTPLRKVFCRISGLATSLRRNAAPHSRRIFHRDVEQQEFQYASSHCLSSYYSVFVARLAIMVMLAILIGLLTILTWHFTKSYTAQSLDSLAYGLRHELLQRPILRMWGVLNSTAEITTAQVKLTEYVMRKYSKPANQAEQVELYESMRDVTWALFASRKALNAITINYKNGFVQAFHRDHRSNNTFYIYSDLANYSISATQSYDINRLSSGDGWSDPPIHGNVSAKWYREPLDPVSGEKIGKARQIPPEDLINIPGISQVADGVASWHVTVSKYMDTPLLSAALPVSDASNESIVAVVGVTTALYSVGQLMKELVEFHSGHIYLTSQEGYLLATSANAPLLTNTSRGPKLMMAADSQDDVIRLGAEWLQKTSGNNFPPGHEVHEENVKLGDQQYYIDSFFLNLKRLPIVGVVIIPRQYIMGKVDERAFKTLVILISASLCILIIGCLCILILTKGVSKEMKLRAELISHLDARRRAEASSNYKSQFLANMSHELRTPMAAVIGLLDILMCDDCLNNEQFATVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDDMPKLVRGDSGRVVQIFTNLINNSIKFTTAGHIILRGWCETSNTLNETGKFCIDQKKSRFPNRTKMKHGDPTKNACKKDKKMTLWFELDDTGCGIDPSKWESVFESFEQADPSTTRTHGGTGLGLCIVRTLVHKMGGEIKVVKKNGPGTLMRLYLVLSTPVDSMDHHCQLDFAKHNAVVLLALRGNMSRLITSQWLCKIRLRTLEASEWNELTLILQELFHARSSETKKGFSPQDPLGEPLRAELMRIKDMKSQIFIIVADIGILDLSTDIWKDQLYFLDKYSGKAKFAWMLNHDTPNAIKMELRGKGHIIMNNKSLYKAKIVHIMEAVMKDRNVELQKKNALRTASKEGDYHECLEIDSTQFETASSDDSDVYELGNSNSKFAKFQVRDDHEEETMATKPCQSLFPPVNDSLVELTRVNSSESNMKTSDLSDARRNSTKPHCESSESDGQNLGCNYPKSQGESHSKNVHGQKSLEGLRILLAEDTPVLQRVTTIMLEKMGAAVITAGDGLQAVEALSAMLSDEEQRRECPTRYDLILMDCQMPKMDGYEATKAIRKLEAGTRLHVPIVALTAHAMSSDEAKCLEVGMDAYLTKPIDYKLMVSTILSLTKRRV 1289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17514777 17521124 + MC10g1415 Mch10g1771 678864

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1771 1289 FunFam Histidine kinase 1-like protein 559 638 - -
Mch10g1771 1289 CDD REC_hyHK_CKI1_RcsC-like 1156 1281 - -
Mch10g1771 1289 MobiDBLite consensus disorder prediction 1105 1119 - -
Mch10g1771 1289 Gene3D - 559 638 - -
Mch10g1771 1289 Pfam His Kinase A (phospho-acceptor) domain 572 637 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Mch10g1771 1289 PRINTS Bacterial sensor protein C-terminal signature 778 788 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Mch10g1771 1289 PRINTS Bacterial sensor protein C-terminal signature 760 774 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Mch10g1771 1289 PRINTS Bacterial sensor protein C-terminal signature 795 813 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Mch10g1771 1289 SMART HKATPase_4 684 835 IPR003594 -
Mch10g1771 1289 MobiDBLite consensus disorder prediction 1120 1144 - -
Mch10g1771 1289 Gene3D - 1132 1287 - -
Mch10g1771 1289 ProSiteProfiles Histidine kinase domain profile. 578 835 IPR005467 -
Mch10g1771 1289 SMART REC_2 1154 1281 IPR001789 GO:0000160(InterPro)
Mch10g1771 1289 MobiDBLite consensus disorder prediction 1094 1147 - -
Mch10g1771 1289 PANTHER TWO-COMPONENT HISTIDINE KINASE 109 840 IPR050736 -
Mch10g1771 1289 ProSiteProfiles Response regulatory domain profile. 1155 1285 IPR001789 GO:0000160(InterPro)
Mch10g1771 1289 Gene3D - 639 836 IPR036890 -
Mch10g1771 1289 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 626 831 IPR036890 -
Mch10g1771 1289 SMART HisKA_10 571 637 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Mch10g1771 1289 CDD HisKA 572 633 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Mch10g1771 1289 Pfam Response regulator receiver domain 1156 1280 IPR001789 GO:0000160(InterPro)
Mch10g1771 1289 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 559 638 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Mch10g1771 1289 SUPERFAMILY CheY-like 1152 1287 IPR011006 -
Mch10g1771 1289 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 684 832 IPR003594 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1771 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1771 Mch-Chr10:17514777 Mch8g2774 Mch-Chr8:30805227 3.31E-63 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch10g1771 . 93 1286 Histidine Kinase Gene Family AT2G17820 63.9 0.0e+00 1432.9
Mch9g1183 . 20 1006 Histidine Kinase Gene Family AT2G01830 70.7 0.0e+00 1324.7
Mch4g1467 . 24 987 Histidine Kinase Gene Family AT2G01830 72.6 0.0e+00 1322.8
Mch4g0340 . 189 1180 Histidine Kinase Gene Family AT2G01830 52.7 2.2e-274 942.2
Mch7g0079 . 63 1007 Histidine Kinase Gene Family AT2G01830 52.9 1.3e-269 926.4
Mch2g0478 . 304 1258 Histidine Kinase Gene Family AT2G01830 51.8 2.5e-265 912.1
Mch11g0473 . 1 992 Histidine Kinase Gene Family AT5G10720 58.5 6.4e-294 1006.9
Mch8g1989 . 2 1121 Histidine Kinase Gene Family AT1G09570 79.7 0.0e+00 1824.7
Mch4g0317 . 18 1136 Histidine Kinase Gene Family AT1G09570 54.3 0.0e+00 1230.7
Mch5g0771 . 27 1120 Histidine Kinase Gene Family AT1G09570 53.5 0.0e+00 1179.5
Mch5g0771 . 13 1061 Histidine Kinase Gene Family AT2G18790 78.3 0.0e+00 1661.4
Mch3g1027 . 15 1046 Histidine Kinase Gene Family AT2G18790 59.5 0.0e+00 1237.6
Mch8g1989 . 22 1055 Histidine Kinase Gene Family AT2G18790 53.5 0.0e+00 1098.2
Mch4g0317 . 26 1089 Histidine Kinase Gene Family AT2G18790 51.2 0.0e+00 1078.2
Mch4g0317 . 12 1135 Histidine Kinase Gene Family AT5G35840 61.2 0.0e+00 1370.5
Mch5g0771 . 21 1122 Histidine Kinase Gene Family AT5G35840 52.3 0.0e+00 1150.2
Mch8g1989 . 10 1115 Histidine Kinase Gene Family AT5G35840 51.7 0.0e+00 1115.9
Mch5g0771 . 30 1122 Histidine Kinase Gene Family AT4G16250 76.5 0.0e+00 1701.0
Mch3g1027 . 25 1108 Histidine Kinase Gene Family AT4G16250 58.1 0.0e+00 1273.8
Mch8g1989 . 9 1116 Histidine Kinase Gene Family AT4G16250 52.9 0.0e+00 1146.7
Mch4g0317 . 26 1135 Histidine Kinase Gene Family AT4G16250 51.2 0.0e+00 1114.8
Mch3g1027 . 37 1109 Histidine Kinase Gene Family AT4G18130 62.2 0.0e+00 1339.3
Mch5g0771 . 38 1120 Histidine Kinase Gene Family AT4G18130 58.4 0.0e+00 1260.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005785 2 0 2 1 2 1 2 1 1 1 1 1 2 1 0 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42526 PF02518 HATPase_c 9.50E-23 CL0025 Mch TR