Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1790 ATGTTATCAAGCTTGATGGACTTTCTGAGGGCCTGCTGGCAGCCATCTGCTAATCGTCGCCGCCATCATCGGGGTGGTGGTTCTGATTCAGTTGGCTGCCAAGATGGGTTACTTTGGTACAAGGACCATGGCCACCACATCAATGGAGAGTTCTCAATGGCTGTTGTCCAGGCCAACAATTTACTTGAGGATCAGAGCCAGCTCGAGTCTGGCCCGTTGAGCTTGCTCGAGTCTGGACCCTATGGAACCTTTGTAGGAATATACGATGGCCATGGCGGCCCCGAGACGTCACGGTTTGTATGTGATAACTTGTTCCAGCATCTCAAGGTGTTCGCCACGGAAGAAAAGACAATGTCTGTGGATGTGATAAAGAAAGCATTCCAAGCAACAGAAGATGGGTTTCTCTCTCTTGTCACCAAGCAATGGCCTCTGAATCCCCAGATTGCGGCTGTTGGTTCTTGCTGCCTGGTTGGTGTGATTTGTGGCGGGATGCTCTACATTGCCAACCTCGGCGATTCCCGAGCTGTGCTGGGAAGGCTCGTACGGTCTACCGGGGAAGTTCTTCCAATTCAGCTGTCAGCAGAGCACAATGTCAGCATACAATCCGTCCGCCAGGAGATGCAGTCTATGCACCCTGATGACTCCCACATAGTAGTGTTGAAGCATAATGTATGGCGTGTAAAGGGCTTGATTCAGATATCTCGATCAATCGGAGACGTATATCTCAAAAAGCCAGAATTTAACCGGGAGCCTTTGTATGCGAAGTTTCGACTCCGAGAACCCTTCAGTAAGCCTATTCTGAGCTCGGAACCAGCAATCTCTGTCCACGAACTCGATGTGAACGATGAATTTATCATATTTGCTTCTGATGGGCTGTGGGAGCACCTTAGCAACCAGGATGCAGTTGATATAGTTCACAAGCATCCTCACAGTGGAAGTGCAAGGAGGCTGGTGAAAGCGGCGATGCAGGAAGCAGCAAAGAAACGGGAAATGCGATACTCGGACTTGAAGAAGATCGACCGTGGGGTTCGGCGCCATTTTCACGACGACACAACGGTGATCGTGGTGTTTCTGGGGTCGAGGGCAGGGGGGAGGAGCCCTGTTGTGTCAGTGAGAGGGGGAGGAGTGAATCTATCTGCAAAGTCGCTGGCTCCA 1155 51.17 MLSSLMDFLRACWQPSANRRRHHRGGGSDSVGCQDGLLWYKDHGHHINGEFSMAVVQANNLLEDQSQLESGPLSLLESGPYGTFVGIYDGHGGPETSRFVCDNLFQHLKVFATEEKTMSVDVIKKAFQATEDGFLSLVTKQWPLNPQIAAVGSCCLVGVICGGMLYIANLGDSRAVLGRLVRSTGEVLPIQLSAEHNVSIQSVRQEMQSMHPDDSHIVVLKHNVWRVKGLIQISRSIGDVYLKKPEFNREPLYAKFRLREPFSKPILSSEPAISVHELDVNDEFIIFASDGLWEHLSNQDAVDIVHKHPHSGSARRLVKAAMQEAAKKREMRYSDLKKIDRGVRRHFHDDTTVIVVFLGSRAGGRSPVVSVRGGGVNLSAKSLAP 385
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17651719 17654589 + MC10g1432 Mch10g1790 678883
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1790 385 PANTHER PROTEIN PHOSPHATASE 43 357 IPR015655 GO:0004722(PANTHER)|GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Mch10g1790 385 SUPERFAMILY PP2C-like 62 359 IPR036457 -
Mch10g1790 385 ProSiteProfiles PPM-type phosphatase domain profile. 50 358 IPR001932 -
Mch10g1790 385 SMART PP2C_4 42 356 IPR001932 -
Mch10g1790 385 Gene3D - 40 363 IPR036457 -
Mch10g1790 385 Pfam Protein phosphatase 2C 83 327 IPR001932 -
Mch10g1790 385 CDD PP2Cc 82 358 IPR001932 -
Mch10g1790 385 FunFam Phosphatase 2C family protein 39 367 - -
Mch10g1790 385 ProSitePatterns PPM-type phosphatase domain signature. 84 92 IPR000222 GO:0043169(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1790 Mch-Chr10:17651719 Mch2g0384 Mch-Chr2:2843424 1.96E-210 dispersed
Mch1g1618 Mch-Chr1:17234809 Mch10g1790 Mch-Chr10:17651719 3.08E-216 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1790 K01102 - csv:101220137 687.567