Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1791 ATGGATTTCATTGCGAACCCATTTCGGTTTTCTTCGTCGTCATCGCCTTCGTTTGGGAATCTCTTCGAGAGGGTTAGAGAAATTTGCTGCTACGCGGTTTCTGCGATTCTTGGCAACATCTTGTCCGCCATCTTCACCTTCTTCTTCGCCCTAGTGGGCACGTTGCTTGGAGCCATGACTGGAGCATTGATTGGCCAAGAAACAGAGAGTGGATTTGTTAGAGGAGCTGCTGTTGGGGCAATTTCTGGAGCTGTTTTCTCTATTGAAGTCTTTGAATCTTCTTTGGTTCTTTGGCAATCGGATGAATCGGGGATTGGATGTCTTCTTTATCTGATTGATGTCATTGCAAGCCTCCTCAGCGGACGACTGGTTCGGGAACGGATTGGTCCGGCCATATTAAGTGCAGTTCAAAGTCAGATGGGTGCTACAGAGGCAAGCTTTGATGACATCCCGAACATCTTCGACACAAGTAGCGCTAAAGGGTTGCCCGGAGACTCAGTCGAGAAGATCCCGAAGATCGTTGTATCTAAAAACAACAGCGTAGATGCTTATGGGGAGAGAGTCTGCTGTTCAGTTTGCCTTCAGGACTTTCAGCTTGGGGAGACTGTAAGAAGTTTACCCTATTGCCATCACATGTTCCATTTGCCCTGCATTGATAAATGGCTTCTTACTCATGGCTCTTGCCCTTTATGTAGAAGGGATCTG 705 47.23 MDFIANPFRFSSSSSPSFGNLFERVREICCYAVSAILGNILSAIFTFFFALVGTLLGAMTGALIGQETESGFVRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCLLYLIDVIASLLSGRLVRERIGPAILSAVQSQMGATEASFDDIPNIFDTSSAKGLPGDSVEKIPKIVVSKNNSVDAYGERVCCSVCLQDFQLGETVRSLPYCHHMFHLPCIDKWLLTHGSCPLCRRDL 235
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17657671 17658911 - MC10g1433 Mch10g1791 678884
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1791 235 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 21 234 IPR044523 -
Mch10g1791 235 SUPERFAMILY RING/U-box 176 235 - -
Mch10g1791 235 ProSiteProfiles Zinc finger RING-type profile. 190 232 IPR001841 -
Mch10g1791 235 FunFam NEP1-interacting protein-like 1 150 235 - -
Mch10g1791 235 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 152 235 IPR013083 -
Mch10g1791 235 Pfam YMGG-like Gly-zipper 50 85 IPR027367 -
Mch10g1791 235 CDD RING-H2_NIPL1-like 189 232 - -
Mch10g1791 235 SMART ring_2 190 231 IPR001841 -
Mch10g1791 235 Pfam Ring finger domain 190 232 IPR001841 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1791 Mch-Chr10:17657671 Mch4g2129 Mch-Chr4:23329000 4.02E-16 dispersed
Mch10g1791 Mch-Chr10:17657671 Mch5g0230 Mch-Chr5:1521738 1.49E-16 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1791 - - - 0.0