Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch10g1836 ATGTGTGATGCGAAGGGGAACGAGGAACCTACGGAAGATGTTCCAGTTGCTTTAAGTGAAGGCAACCAAGTTAATTCAAAAGATGAGCTTCATGATTCTCTCTCTGTGCCAGCTGAGGCAACTACCAAGTCTTGTGAAAATAAGATTGATTCACCTAAGACTCATGTACCTGAAGTTGTGCCTCCTGAGGATAATTTAGATATACCTCCAATTACTCAGCAACCGAATCAAGAATCGGCAACTTCACCTCCCCTGGATCATGACCAAGAGTTGGATAAGCCTGATGCTGAACCTGCCTCTGATGTCAAGACCGGGCCTGATGAGTTGCTGCCAAGGGAGGTGGGTCTAGATGCTGCTACCTCTAACACTCACCTGGAAACGATTCAATCCTCCATGGATGCCAAATATGAGGCCATTGAGATGCCTGAAATTAAAACCGGTTCTCTAGATGACACTTCAACTGCAAGTCATGAAGAACCTGTAACTCCTCATCCATTGTCATCTGGTGTTAAAGCTGAAATGGAGAATGCCATAGAATTGAAGGTCAATGAAGATAGTGTTACTACACCTCATAACGGGCATTCAAATGTGAACCACTCGTTTCTTTTGGATGAAAATCATATTGCTGAAGGTAGCGAATCAGGAACAGAAGAAGAGCAATCTGCTTTCATGAAGGAGCTTGAGAATTTCTTCAGAGAAAGAAGCCTGGAATTCAAACCTCCCAAGTTTTATGGAGAGGGTCTGAATTGCCTCAAGTTATGGAGGGCCGTGACTAGATTGGGTGGCTATGACAAGGTGACTTCATGCAAGTTGTGGCGGCAAGTGGGAGAGTCTTTCAAGCCCCCAAAGACATGTACGACAGTATCATGGACGTTTCGAGGATTTTATGAGAAGGCTCTTCTTGATTATGAGAGGCATAAAACCCATGGTGGTGAACTCAGTGTACCTATTGCTTCCAACTCAGAACCTATGAGTATTGAAAACCAGGGATCAGGTTCAGGTAGAGCACGAAGAGACGCTGCTGCACGTGCAATGCAGGGCTGGCACTCACAGCGTCTTCTGGGAAATGGTGAAGTTAGTGATCCTATTATCAAGGATAAGAACTCACTTTCAGTCCAGAAAAGGGAAAAACAACTTAAAAGCATCGGTCTTCTCAAGCGGAAGAAACCATCTTACATGGAGCATCCCATGAAGTCAGCACGTACAAAATCATCAAAACCACAGTTGGATGTGGCAGTTGTTGACATTGGACAACCAGCTGATTGGGTCAAGGTCAATGTGCAGAAAACTAAAGATTGTTATGAAGTCTATGCATTAGTTCCCGGACTACTTCGTGAGGAGGTGCGTGTTCAGTCTGATCCAGCAGGACGCTTGGTTATTAGTGGTGAACCTGAACATCCTGATAATCCATGGGGTGTCACACCCTTCAAAAAGGTGGTCAGCCTACCTTCAAGAATTGACCCACACCAGACGTCTGCCGTTGTCACATTACATGGACAGTTGTTTGTTCGTGTTCCATTTGAACAGTTGGAATGA 1536 44.86 MCDAKGNEEPTEDVPVALSEGNQVNSKDELHDSLSVPAEATTKSCENKIDSPKTHVPEVVPPEDNLDIPPITQQPNQESATSPPLDHDQELDKPDAEPASDVKTGPDELLPREVGLDAATSNTHLETIQSSMDAKYEAIEMPEIKTGSLDDTSTASHEEPVTPHPLSSGVKAEMENAIELKVNEDSVTTPHNGHSNVNHSFLLDENHIAEGSESGTEEEQSAFMKELENFFRERSLEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKTHGGELSVPIASNSEPMSIENQGSGSGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDKNSLSVQKREKQLKSIGLLKRKKPSYMEHPMKSARTKSSKPQLDVAVVDIGQPADWVKVNVQKTKDCYEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPDNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQLE 511
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17977822 17995516 - MC10g1475 Mch10g1836 678929

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch10g1836 511 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 54 509 IPR045147 GO:0003677(PANTHER)|GO:0005634(PANTHER)|GO:0006357(InterPro)|GO:0006357(PANTHER)
Mch10g1836 511 CDD ACD_sHsps_p23-like 430 506 - -
Mch10g1836 511 Gene3D - 408 511 IPR008978 -
Mch10g1836 511 MobiDBLite consensus disorder prediction 69 84 - -
Mch10g1836 511 Gene3D - 217 314 IPR036431 GO:0003677(InterPro)
Mch10g1836 511 MobiDBLite consensus disorder prediction 85 110 - -
Mch10g1836 511 FunFam AT-rich interactive domain-containing protein 3 403 511 - -
Mch10g1836 511 Pfam ARID/BRIGHT DNA binding domain 220 304 IPR001606 GO:0003677(InterPro)
Mch10g1836 511 SMART ARID_2 214 304 - -
Mch10g1836 511 MobiDBLite consensus disorder prediction 315 338 - -
Mch10g1836 511 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 411 511 IPR002068 -
Mch10g1836 511 CDD ARID 222 304 - -
Mch10g1836 511 Pfam Hsp20/alpha crystallin family 428 508 IPR002068 -
Mch10g1836 511 FunFam AT-rich interactive domain-containing protein 3 217 316 - -
Mch10g1836 511 SUPERFAMILY ARID-like 211 318 IPR036431 GO:0003677(InterPro)
Mch10g1836 511 SMART bright_3 218 309 IPR001606 GO:0003677(InterPro)
Mch10g1836 511 MobiDBLite consensus disorder prediction 1 128 - -
Mch10g1836 511 SUPERFAMILY HSP20-like chaperones 422 507 IPR008978 -
Mch10g1836 511 MobiDBLite consensus disorder prediction 147 161 - -
Mch10g1836 511 MobiDBLite consensus disorder prediction 315 332 - -
Mch10g1836 511 ProSiteProfiles ARID domain profile. 217 308 IPR001606 GO:0003677(InterPro)
Mch10g1836 511 MobiDBLite consensus disorder prediction 147 168 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch10g1836 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1836 Mch-Chr10:17977822 Mch11g0026 Mch-Chr11:203903 1.61E-19 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch7g0866 . 115 457 ARID Transcription Factor Family AT1G04880 60.7 1.3e-109 393.7
Mch10g1836 . 200 479 ARID Transcription Factor Family AT1G20910 60.1 3.0e-91 332.4
Mch11g0083 . 16 309 ARID Transcription Factor Family AT1G76110 67.9 3.5e-112 401.7
Mch10g1836 . 188 509 ARID Transcription Factor Family AT1G76510 60.8 7.1e-110 394.4
Mch8g1003 . 2 781 ARID Transcription Factor Family AT3G43240 58.0 7.1e-259 890.2
Mch9g0178 . 2 771 ARID Transcription Factor Family AT3G43240 57.9 1.2e-258 889.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003180 3 4 1 2 0 1 3 1 1 1 1 1 2 1 1 2 1 2 3 1 1 2 2 2 2 1 2 1 3 2 50
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42530 PF00011 HSP20 8.40E-06 CL0190 Mch TR