Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0025 CTCATCCGCCGCCCTCGGGGCCGTCCTCCGGGCTCCAAGAACAAGCCCAAGCCTCCCATCATCGTCACCCGCGACAGCCCCAACGTCCTCGGCTCCCACGTTCTCGAGGTCTCCGCCGCCGCCGACATCCTCGACAGCCTCTCCAACTACGCCCGCCGGCGGGGCAGAGGCCTCTCCATCCTCTCCGGAACCGGCACCGTCGCCAACGTCACCCTGCGCCAGCCTGCCGCTTGTGCCTCCCCGCCCGGAAGCGTCCTCACGCTTCACGGGAGGTTCGAGATTCTGTCGCTGACGGGGACGGTGCTTCCTCCGCCGGCCCCACCGCAAGCGGGCGGGCTGTGCATATTCCTGGCGGGCGCCCAGGGGCAGGTGGTGGGAGGCACCGTGGTGGGGCCCTTGGTGGCATCGGGACCAGTGATTTTGATGGCCGCGTCGTTCTCGAACGCGGTGTTTGAGCGGTTGCCTGTGGAGGAGGAAGATGCGGAGGAGGGTGGGGGGGCGGGAGGTCAGCCCACGGCATCGCAGTCGTCGGGAGTGACCGGAGGTGGAGGGGGA 555 69.55 LIRRPRGRPPGSKNKPKPPIIVTRDSPNVLGSHVLEVSAAADILDSLSNYARRRGRGLSILSGTGTVANVTLRQPAACASPPGSVLTLHGRFEILSLTGTVLPPPAPPQAGGLCIFLAGAQGQVVGGTVVGPLVASGPVILMAASFSNAVFERLPVEEEDAEEGGGAGGQPTASQSSGVTGGGGG 185
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 199676 200230 + MC11g0022 Mch11g0025 678959
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0025 185 MobiDBLite consensus disorder prediction 1 21 - -
Mch11g0025 185 MobiDBLite consensus disorder prediction 157 185 - -
Mch11g0025 185 Gene3D - 32 163 - -
Mch11g0025 185 Pfam Plants and Prokaryotes Conserved (PCC) domain 32 147 IPR005175 -
Mch11g0025 185 ProSiteProfiles PPC domain profile profile. 27 167 IPR005175 -
Mch11g0025 185 SUPERFAMILY AF0104/ALDC/Ptd012-like 29 160 - -
Mch11g0025 185 CDD DUF296 33 120 IPR005175 -
Mch11g0025 185 FunFam AT-hook motif nuclear-localized protein 30 162 - -
Mch11g0025 185 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 3 183 IPR014476 GO:0003680(PANTHER)|GO:0003680(InterPro)|GO:0003700(PANTHER)|GO:0005634(PANTHER)|GO:0010228(PANTHER)
Mch11g0025 185 MobiDBLite consensus disorder prediction 169 185 - -
Mch11g0025 185 PIRSF ESCAROLA 1 182 IPR014476 GO:0003680(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0025 Mch-Chr11:199676 Mch7g0752 Mch-Chr7:12143320 2.66E-73 dispersed
Mch11g0025 Mch-Chr11:199676 Mch8g2974 Mch-Chr8:32422099 1.22E-73 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0025 - - - 0.0