Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0029 ATGGAGAAGGGGCCGACCACTGTATCAGCCATGGAGGCGTTCGAGAAGCTGGAGAAGGTCGGAGAAGGGACTTATGGCAAAGTTTACAGGGCAAGGGAGAAGGCCACCGGCAAGATTGTTGCTCTCAAGAAGACGCGCCTCCACGAGGATGAGGAAGGTGTTCCTCCCACCACTCTTAGAGAGGTTTCAATTCTTCGAATGCTTTCTAGGGATCCTCATATTGTTAGGCTTATGGACGTCAAACAAGGCCAGAACAAGGAAGGGAAAACAGTTCTTTACTTGGTGTTTGAATACATGGATACTGATTTGAAAAAATTCATTAAGAGTTTCCGTGGTACGGGAGAATCCATTCCCGTCAACACTGTCAAGAGTTTGATGTACCAACTCTGCAAGGGCGTTGCTTTCTGCCATGGTCATGGTATCCTGCACAGGGACCTGAAACCACACAATCTATTGATGGACCGAAAGACCATGATGCTCAAAATTGCAGATCTTGGGCTCGCTCGAGCATTTACTGTGCCAATTAAGAAGTACACTCATGAGGCAAGCCTGATTTTTCTGGGTTTTATTCTAACCCTCTGGTATAGAGCTCCCGAAGTTCTTTTGGGGACTACTCATTACTCTACAGCAGTAGATATGTGGTCTGTTGGCTGCATATTTGCCGAACTTGCCACGAAGCAAGCGCTCTTTCCCGGAGATTCTGAGTTGCAACAGCTCCTTCATATCTTCAGGCTATTAGGAACCCCAAATGAAAAAGTTTGGCCAGGTGTGAGCAAACTAATGAACTGGCATGAGTACCCCCAGTGGAGCCCCCAAAGCCTCTCAACTGCTGTCCCCAACTTGGATGATAAAGGGCTAGATCTGCTTTCAAAAATGCTCAAGTATGAACCCTCAATGCGTATTTCAGCAAAGAAAGCAATGGAACATCCTTACTTTGATGATTTGAACAAGGCATATCTCTGA 963 46.31 MEKGPTTVSAMEAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDEEGVPPTTLREVSILRMLSRDPHIVRLMDVKQGQNKEGKTVLYLVFEYMDTDLKKFIKSFRGTGESIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMMLKIADLGLARAFTVPIKKYTHEASLIFLGFILTLWYRAPEVLLGTTHYSTAVDMWSVGCIFAELATKQALFPGDSELQQLLHIFRLLGTPNEKVWPGVSKLMNWHEYPQWSPQSLSTAVPNLDDKGLDLLSKMLKYEPSMRISAKKAMEHPYFDDLNKAYL 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 216462 220004 - MC11g0025 Mch11g0029 678963

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0029 320 PANTHER CELL DIVISION PROTEIN KINASE 14 312 IPR050108 GO:0000082(PANTHER)|GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0004693(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)|GO:0010033(PANTHER)|GO:0010389(PANTHER)|GO:0010468(PANTHER)|GO:0030332(PANTHER)
Mch11g0029 320 Pfam Protein kinase domain 14 312 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch11g0029 320 SUPERFAMILY Protein kinase-like (PK-like) 9 316 IPR011009 -
Mch11g0029 320 FunFam Cyclin-dependent kinase B2,2 10 100 - -
Mch11g0029 320 Gene3D Phosphorylase Kinase; domain 1 9 100 - -
Mch11g0029 320 Gene3D Transferase(Phosphotransferase) domain 1 102 319 - -
Mch11g0029 320 SMART serkin_6 14 312 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch11g0029 320 FunFam Cyclin-dependent kinase 2 102 319 - -
Mch11g0029 320 ProSiteProfiles Protein kinase domain profile. 14 312 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch11g0029 320 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch11g0029 320 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0029 K07760 - - csv:101208001 614.764
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0029 Mch-Chr11:216462 Mch1g0587 Mch-Chr1:10075525 8.34E-148 dispersed
Mch4g1248 Mch-Chr4:14464726 Mch11g0029 Mch-Chr11:216462 3.35E-14 dispersed
Mch11g0029 Mch-Chr11:216462 Mch9g2347 Mch-Chr9:23460276 8.12E-82 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g35 . . . . . . . Bma01g02422 . . . . . . . . . . . . . . . . . . . . . . . . Cone7ag1950 . . . Csa04g02739 . . . . . . . . . . . . . . . . . . . Bhi09g02827 . . . . Mch11g0029 . . . . . . . . . . Chy07g00426 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch9g1849 . 1 295 Core Cell Cycle Gene Families AT3G48750 86.4 5.1e-152 533.9
Mch1g0587 . 1 312 Core Cell Cycle Gene Families AT3G48750 54.3 5.3e-93 337.8
Mch11g0029 . 11 315 Core Cell Cycle Gene Families AT3G48750 52.3 4.5e-92 334.7
Mch1g0587 . 1 318 Core Cell Cycle Gene Families AT3G54180 81.1 1.7e-150 528.9
Mch11g0029 . 11 318 Core Cell Cycle Gene Families AT3G54180 65.1 5.6e-117 417.5
Mch9g1849 . 1 290 Core Cell Cycle Gene Families AT3G54180 54.4 1.3e-92 336.7
Mch1g0587 . 1 318 Core Cell Cycle Gene Families AT2G38620 67.6 1.7e-119 425.6
Mch11g0029 . 11 318 Core Cell Cycle Gene Families AT2G38620 56.2 6.5e-92 334.0
Mch11g0029 . 1 315 Core Cell Cycle Gene Families AT1G76540 82.5 2.6e-154 541.6
Mch1g0587 . 1 312 Core Cell Cycle Gene Families AT1G76540 64.1 1.1e-115 413.3
Mch9g1849 . 1 290 Core Cell Cycle Gene Families AT1G76540 54.0 5.1e-94 341.3
Mch11g0029 . 8 315 Core Cell Cycle Gene Families AT1G20930 86.7 1.9e-157 552.0
Mch1g0587 . 1 318 Core Cell Cycle Gene Families AT1G20930 63.3 3.3e-117 418.3
Mch9g1849 . 1 290 Core Cell Cycle Gene Families AT1G20930 55.4 5.0e-97 351.3
Mch2g0040 . 1 430 Core Cell Cycle Gene Families AT5G10270 79.8 3.4e-204 708.0
Mch10g1090 . 123 439 Core Cell Cycle Gene Families AT5G10270 55.0 9.5e-98 354.4
Mch6g1637 . 109 427 Core Cell Cycle Gene Families AT5G10270 51.6 1.6e-97 353.6
Mch5g0670 . 110 426 Core Cell Cycle Gene Families AT5G10270 53.2 2.8e-97 352.8
Mch11g1889 . 32 348 Core Cell Cycle Gene Families AT5G10270 52.1 8.9e-96 347.8
Mch8g2907 . 102 420 Core Cell Cycle Gene Families AT5G10270 50.7 3.4e-95 345.9
Mch2g0641 . 142 458 Core Cell Cycle Gene Families AT5G10270 52.0 5.7e-95 345.1
Mch3g1322 . 93 409 Core Cell Cycle Gene Families AT5G10270 52.3 1.7e-94 343.6
Mch3g1720 . 119 437 Core Cell Cycle Gene Families AT5G10270 51.6 3.7e-94 342.4
Mch2g0040 . 65 452 Core Cell Cycle Gene Families AT5G64960 72.8 3.4e-163 571.6
Mch10g1090 . 177 439 Core Cell Cycle Gene Families AT5G64960 54.7 8.7e-82 301.2
Mch2g0641 . 196 458 Core Cell Cycle Gene Families AT5G64960 52.5 9.6e-81 297.7
Mch6g1637 . 163 427 Core Cell Cycle Gene Families AT5G64960 51.1 9.6e-81 297.7
Mch5g0670 . 164 426 Core Cell Cycle Gene Families AT5G64960 51.8 6.2e-80 295.0
Mch11g1889 . 86 348 Core Cell Cycle Gene Families AT5G64960 52.5 1.4e-79 293.9
Mch3g1322 . 147 409 Core Cell Cycle Gene Families AT5G64960 51.8 3.1e-79 292.7
Mch2g0640 . 180 444 Core Cell Cycle Gene Families AT5G64960 51.8 6.9e-79 291.6
Mch3g1720 . 173 437 Core Cell Cycle Gene Families AT5G64960 51.1 1.5e-78 290.4
Mch6g0407 . 4 414 Core Cell Cycle Gene Families AT1G73690 75.2 3.7e-174 607.8
Mch6g0407 . 12 348 Core Cell Cycle Gene Families AT1G66750 76.3 2.6e-155 545.0
Mch6g0407 . 8 415 Core Cell Cycle Gene Families AT1G18040 75.7 1.3e-174 609.4
Mch1g0310 . 22 514 Core Cell Cycle Gene Families AT5G63610 71.3 2.2e-197 685.3
Mch8g3155 . 1 481 Core Cell Cycle Gene Families AT4G28980 61.8 5.2e-170 594.3
Mch4g1794 . 5 508 Core Cell Cycle Gene Families AT1G44110 57.2 4.2e-145 511.5
Mch9g0378 . 207 485 Core Cell Cycle Gene Families AT1G44110 55.2 8.1e-88 321.2
Mch11g0583 . 206 472 Core Cell Cycle Gene Families AT1G44110 57.3 1.1e-87 320.9
Mch11g0342 . 91 380 Core Cell Cycle Gene Families AT1G44110 50.7 4.8e-80 295.4
Mch8g0655 . 88 372 Core Cell Cycle Gene Families AT1G44110 50.2 1.2e-78 290.8
Mch8g0407 . 171 432 Core Cell Cycle Gene Families AT1G44110 54.6 7.6e-78 288.1
Mch9g0378 . 206 481 Core Cell Cycle Gene Families AT1G77390 52.2 3.3e-78 289.3
Mch11g0583 . 206 472 Core Cell Cycle Gene Families AT1G77390 53.6 3.6e-77 285.8
Mch8g0407 . 171 428 Core Cell Cycle Gene Families AT1G77390 52.3 6.6e-71 265.0
Mch11g0583 . 16 484 Core Cell Cycle Gene Families AT5G25380 54.3 6.5e-119 424.5
Mch8g0407 . 66 440 Core Cell Cycle Gene Families AT5G25380 55.6 1.6e-104 376.7
Mch4g1794 . 226 493 Core Cell Cycle Gene Families AT5G25380 56.3 1.6e-80 297.0
Mch11g0583 . 44 422 Core Cell Cycle Gene Families AT5G11300 54.1 4.3e-96 348.6
Mch8g0407 . 33 382 Core Cell Cycle Gene Families AT5G11300 52.5 8.3e-84 307.8
Mch4g1794 . 226 446 Core Cell Cycle Gene Families AT5G11300 57.9 1.4e-67 253.8
Mch8g0655 . 90 305 Core Cell Cycle Gene Families AT5G11300 52.8 2.9e-60 229.6
Mch11g0342 . 91 317 Core Cell Cycle Gene Families AT5G11300 52.0 2.4e-59 226.5
Mch9g0378 . 48 486 Core Cell Cycle Gene Families AT1G15570 53.8 1.9e-118 422.9
Mch4g1794 . 227 493 Core Cell Cycle Gene Families AT1G15570 54.3 5.7e-78 288.5
Mch9g0378 . 4 485 Core Cell Cycle Gene Families AT1G80370 52.8 1.0e-119 427.2
Mch4g1794 . 227 506 Core Cell Cycle Gene Families AT1G80370 55.0 8.7e-82 301.2
Mch8g0655 . 3 370 Core Cell Cycle Gene Families AT5G43080 59.1 7.5e-118 420.6
Mch11g0342 . 1 384 Core Cell Cycle Gene Families AT5G43080 56.5 7.5e-110 394.0
Mch4g1794 . 228 508 Core Cell Cycle Gene Families AT5G43080 50.5 2.1e-80 296.2
Mch11g0583 . 208 474 Core Cell Cycle Gene Families AT5G43080 55.1 2.3e-79 292.7
Mch8g0407 . 171 446 Core Cell Cycle Gene Families AT5G43080 50.9 1.7e-74 276.6
Mch8g0655 . 1 370 Core Cell Cycle Gene Families AT1G47210 59.5 3.0e-125 445.3
Mch11g0342 . 1 384 Core Cell Cycle Gene Families AT1G47210 54.8 3.4e-113 405.2
Mch11g0583 . 208 474 Core Cell Cycle Gene Families AT1G47210 53.5 1.4e-77 287.0
Mch9g0378 . 208 480 Core Cell Cycle Gene Families AT1G47210 51.4 2.2e-75 279.6
Mch8g0407 . 171 434 Core Cell Cycle Gene Families AT1G47210 51.1 2.7e-73 272.7
Mch8g0655 . 53 370 Core Cell Cycle Gene Families AT1G47220 54.7 2.4e-94 342.4
Mch11g0342 . 91 381 Core Cell Cycle Gene Families AT1G47220 57.7 2.4e-94 342.4
Mch11g0583 . 208 474 Core Cell Cycle Gene Families AT1G47220 51.7 2.2e-71 266.2
Mch8g0407 . 171 434 Core Cell Cycle Gene Families AT1G47220 51.1 1.1e-70 263.8
Mch8g0655 . 1 370 Core Cell Cycle Gene Families AT1G47230 58.9 5.3e-122 434.5
Mch11g0342 . 1 383 Core Cell Cycle Gene Families AT1G47230 55.5 1.5e-113 406.4
Mch4g1794 . 229 510 Core Cell Cycle Gene Families AT1G47230 50.9 2.1e-78 289.7
Mch11g0583 . 209 474 Core Cell Cycle Gene Families AT1G47230 52.4 7.7e-73 271.2
Mch9g0378 . 210 480 Core Cell Cycle Gene Families AT1G47230 51.6 2.2e-72 269.6
Mch8g0407 . 171 434 Core Cell Cycle Gene Families AT1G47230 50.9 3.0e-69 259.2
Mch1g0470 . 1 447 Core Cell Cycle Gene Families AT4G37490 54.0 1.7e-111 399.8
Mch1g0470 . 1 344 Core Cell Cycle Gene Families AT5G06150 54.1 1.7e-82 303.1
Mch11g0059 . 234 406 Core Cell Cycle Gene Families AT5G06150 52.0 5.6e-46 181.8
Mch1g0470 . 1 404 Core Cell Cycle Gene Families AT3G11520 55.6 6.7e-104 374.4
Mch2g0203 . 25 365 Core Cell Cycle Gene Families AT3G11520 51.0 1.3e-83 307.0
Mch2g0203 . 1 403 Core Cell Cycle Gene Families AT2G26760 52.6 1.3e-110 396.7
Mch1g0470 . 90 445 Core Cell Cycle Gene Families AT2G26760 56.1 4.1e-101 365.2
Mch1g1647 . 8 443 Core Cell Cycle Gene Families AT2G17620 58.4 5.3e-126 448.0
Mch11g0059 . 108 508 Core Cell Cycle Gene Families AT2G17620 53.2 8.0e-106 380.9
Mch1g1647 . 5 400 Core Cell Cycle Gene Families AT4G35620 58.1 1.3e-104 376.7
Mch11g0059 . 101 465 Core Cell Cycle Gene Families AT4G35620 51.9 4.3e-87 318.5
Mch11g0059 . 75 508 Core Cell Cycle Gene Families AT1G20610 63.2 1.3e-140 496.5
Mch1g1647 . 1 443 Core Cell Cycle Gene Families AT1G20610 55.7 4.1e-118 421.8
Mch11g0059 . 75 405 Core Cell Cycle Gene Families AT1G76310 62.8 1.8e-100 362.8
Mch1g1647 . 1 340 Core Cell Cycle Gene Families AT1G76310 51.2 1.1e-78 290.4
Mch1g0470 . 175 340 Core Cell Cycle Gene Families AT1G76310 53.5 8.4e-42 167.9
Mch2g0203 . 137 304 Core Cell Cycle Gene Families AT1G76310 52.4 3.2e-41 166.0
Mch4g0020 . 189 643 Core Cell Cycle Gene Families AT1G16330 52.7 3.1e-117 419.5
Mch9g2211 . 57 385 Core Cell Cycle Gene Families AT1G70210 59.5 9.8e-99 357.1
Mch1g1386 . 40 321 Core Cell Cycle Gene Families AT2G22490 54.0 2.2e-80 296.2
Mch10g0481 . 1 339 Core Cell Cycle Gene Families AT4G34160 52.9 1.8e-85 313.2
Mch11g0329 . 25 292 Core Cell Cycle Gene Families AT4G34160 51.1 7.6e-68 254.6
Mch10g0481 . 19 371 Core Cell Cycle Gene Families AT3G50070 50.4 1.8e-87 319.7
Mch1g1237 . 19 341 Core Cell Cycle Gene Families AT3G50070 50.5 2.3e-82 302.8
Mch8g0665 . 43 346 Core Cell Cycle Gene Families AT3G50070 51.0 4.7e-75 278.5
Mch11g0329 . 25 300 Core Cell Cycle Gene Families AT3G50070 50.4 1.2e-67 253.8
Mch1g1386 . 43 263 Core Cell Cycle Gene Families AT5G65420 59.4 1.5e-70 263.1
Mch8g0255 . 69 268 Core Cell Cycle Gene Families AT5G65420 55.4 2.1e-59 226.1
Mch1g1386 . 24 221 Core Cell Cycle Gene Families AT5G10440 55.0 3.0e-56 215.3
Mch8g0255 . 65 242 Core Cell Cycle Gene Families AT5G10440 51.4 9.8e-47 183.7
Mch1g1181 . 1 274 Core Cell Cycle Gene Families AT5G27620 65.0 1.1e-98 356.7
Mch3g0613 . 1 87 Core Cell Cycle Gene Families AT2G27960 93.1 3.6e-45 177.2
Mch2g0301 . 1 86 Core Cell Cycle Gene Families AT2G27960 90.7 1.7e-42 168.3
Mch3g0613 . 1 83 Core Cell Cycle Gene Families AT2G27970 86.7 2.6e-40 161.0
Mch2g0301 . 1 76 Core Cell Cycle Gene Families AT2G27970 90.8 1.4e-38 155.2
Mch9g1718 . 35 988 Core Cell Cycle Gene Families AT3G12280 74.5 0.0e+00 1374.4
Mch9g0766 . 1 481 Core Cell Cycle Gene Families AT1G02970 59.6 1.9e-159 559.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009383 0 1 1 1 1 0 1 1 0 1 1 1 1 1 1 1 0 3 1 0 1 1 1 1 1 1 1 2 1 1 28
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77036 PF00069 Pkinase 1.80E-69 CL0016 Mch PK