Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0029 ATGGAGAAGGGGCCGACCACTGTATCAGCCATGGAGGCGTTCGAGAAGCTGGAGAAGGTCGGAGAAGGGACTTATGGCAAAGTTTACAGGGCAAGGGAGAAGGCCACCGGCAAGATTGTTGCTCTCAAGAAGACGCGCCTCCACGAGGATGAGGAAGGTGTTCCTCCCACCACTCTTAGAGAGGTTTCAATTCTTCGAATGCTTTCTAGGGATCCTCATATTGTTAGGCTTATGGACGTCAAACAAGGCCAGAACAAGGAAGGGAAAACAGTTCTTTACTTGGTGTTTGAATACATGGATACTGATTTGAAAAAATTCATTAAGAGTTTCCGTGGTACGGGAGAATCCATTCCCGTCAACACTGTCAAGAGTTTGATGTACCAACTCTGCAAGGGCGTTGCTTTCTGCCATGGTCATGGTATCCTGCACAGGGACCTGAAACCACACAATCTATTGATGGACCGAAAGACCATGATGCTCAAAATTGCAGATCTTGGGCTCGCTCGAGCATTTACTGTGCCAATTAAGAAGTACACTCATGAGGCAAGCCTGATTTTTCTGGGTTTTATTCTAACCCTCTGGTATAGAGCTCCCGAAGTTCTTTTGGGGACTACTCATTACTCTACAGCAGTAGATATGTGGTCTGTTGGCTGCATATTTGCCGAACTTGCCACGAAGCAAGCGCTCTTTCCCGGAGATTCTGAGTTGCAACAGCTCCTTCATATCTTCAGGCTATTAGGAACCCCAAATGAAAAAGTTTGGCCAGGTGTGAGCAAACTAATGAACTGGCATGAGTACCCCCAGTGGAGCCCCCAAAGCCTCTCAACTGCTGTCCCCAACTTGGATGATAAAGGGCTAGATCTGCTTTCAAAAATGCTCAAGTATGAACCCTCAATGCGTATTTCAGCAAAGAAAGCAATGGAACATCCTTACTTTGATGATTTGAACAAGGCATATCTCTGA 963 46.31 MEKGPTTVSAMEAFEKLEKVGEGTYGKVYRAREKATGKIVALKKTRLHEDEEGVPPTTLREVSILRMLSRDPHIVRLMDVKQGQNKEGKTVLYLVFEYMDTDLKKFIKSFRGTGESIPVNTVKSLMYQLCKGVAFCHGHGILHRDLKPHNLLMDRKTMMLKIADLGLARAFTVPIKKYTHEASLIFLGFILTLWYRAPEVLLGTTHYSTAVDMWSVGCIFAELATKQALFPGDSELQQLLHIFRLLGTPNEKVWPGVSKLMNWHEYPQWSPQSLSTAVPNLDDKGLDLLSKMLKYEPSMRISAKKAMEHPYFDDLNKAYL 320
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 216462 220004 - MC11g0025 Mch11g0029 678963
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0029 320 PANTHER CELL DIVISION PROTEIN KINASE 14 312 IPR050108 GO:0000082(PANTHER)|GO:0000307(PANTHER)|GO:0004674(PANTHER)|GO:0004693(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)|GO:0010033(PANTHER)|GO:0010389(PANTHER)|GO:0010468(PANTHER)|GO:0030332(PANTHER)
Mch11g0029 320 Pfam Protein kinase domain 14 312 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch11g0029 320 SUPERFAMILY Protein kinase-like (PK-like) 9 316 IPR011009 -
Mch11g0029 320 FunFam Cyclin-dependent kinase B2,2 10 100 - -
Mch11g0029 320 Gene3D Phosphorylase Kinase; domain 1 9 100 - -
Mch11g0029 320 Gene3D Transferase(Phosphotransferase) domain 1 102 319 - -
Mch11g0029 320 SMART serkin_6 14 312 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch11g0029 320 FunFam Cyclin-dependent kinase 2 102 319 - -
Mch11g0029 320 ProSiteProfiles Protein kinase domain profile. 14 312 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Mch11g0029 320 ProSitePatterns Serine/Threonine protein kinases active-site signature. 141 153 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Mch11g0029 320 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0029 Mch-Chr11:216462 Mch1g0587 Mch-Chr1:10075525 8.34E-148 dispersed
Mch4g1248 Mch-Chr4:14464726 Mch11g0029 Mch-Chr11:216462 3.35E-14 dispersed
Mch11g0029 Mch-Chr11:216462 Mch9g2347 Mch-Chr9:23460276 8.12E-82 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
77036 PF00069 Pkinase 1.80E-69 CL0016 Mch PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0029 K07760 - csv:101208001 614.764