Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0030 ATGTCGGGATCTGATACCGGAGTGATGACCAGCAGCGAACCCTTCACCATCGGTCTCCAGAAGAGTCCGGTACAGTCGCAACAGCCGATCCTGCAAGGCATGCATTTAGCCTTCGGCGCCGACGGCGTCTACAAGCCCGTCGCCGCCGCCTCACCCCCCTACCAGTCCTCCGGTGTCGGAGTTCCCGGCAATGCCGGCGCCGACGGATCTGCTCGTGAAGCTTTCGTCAACATTAATATGCAAACCGAGCCTGTGAAGAGGAAGAGAGGGAGGCCCAGGAAGTATGGGCCTGATGGCAGTATGGCACTGTCCCCTGCTCTCCCCTCCGCCGCCGCAACTCAGTCCAGTGGAGGGTTTTCCCCTCCGCCCACCGCCACTCCTCTGTCGGGAGGACCGGCCTCTCCAACTTCTATGAAGAAAGCCAGAGGCAGACCCCCTGGCTCTAGCAAAAAGCAGCAATTAGATGCTTTGGGGTCAGCTGGAGTTGGATTTACCCCACATGTCATCACCGTGAAAGCTGGAGAGGATGTATCTTCGAAAATAATGTCATTTTCGCAGAATGGTCCGAGAGCTGTTTGTATCCTTACGGCAAATGGAGCAATATCCAATGTGACTCTACGTCAACCAGCCATGTCTGGTGGAACTGTGACTTACGAGGGGCGATTCGAGATCTTGTCACTATCTGGGTCATATCTCCTGTCTGAAAATGGCGGTCAGCGGAGCCGAACTGGGGGTCTAAGTGTTTCATTGTCTGGACCAGACGGTAGAGTATTAGGTGGTGGGGTGGCTGGTCTTCTAACGGCAGCGTCTCCTGTTCAGGTGGTGGTGGGGAGTTTCGTCGCAGATGGGTGGCGCAAGGAATTGCAACAAGCAAACCAAATTGAACAGCCGCCTGCTTCTGGACCTCATAAACTTGCTCCAATCCGTGCTGGAATGACGGGGGCCAGCAGCCCGCCATCACGTGGGACTCTCAGTGAATCCTCAGGAGGGCCTGGAAGTCCGTTTAATCAGAGTGCTGGAGGCTGCAACAACAGTAACCCACAAGGCATGACCGCCATACCTTGGAAGTGA 1071 55.74 MSGSDTGVMTSSEPFTIGLQKSPVQSQQPILQGMHLAFGADGVYKPVAAASPPYQSSGVGVPGNAGADGSAREAFVNINMQTEPVKRKRGRPRKYGPDGSMALSPALPSAAATQSSGGFSPPPTATPLSGGPASPTSMKKARGRPPGSSKKQQLDALGSAGVGFTPHVITVKAGEDVSSKIMSFSQNGPRAVCILTANGAISNVTLRQPAMSGGTVTYEGRFEILSLSGSYLLSENGGQRSRTGGLSVSLSGPDGRVLGGGVAGLLTAASPVQVVVGSFVADGWRKELQQANQIEQPPASGPHKLAPIRAGMTGASSPPSRGTLSESSGGPGSPFNQSAGGCNNSNPQGMTAIPWK 356
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 223655 228107 + MC11g0026 Mch11g0030 678964
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0030 356 Gene3D - 166 296 - -
Mch11g0030 356 Pfam Plants and Prokaryotes Conserved (PCC) domain 166 280 IPR005175 -
Mch11g0030 356 ProSiteProfiles PPC domain profile profile. 160 300 IPR005175 -
Mch11g0030 356 FunFam AT-hook motif nuclear-localized protein 1-like 166 297 - -
Mch11g0030 356 SMART AT_hook_2 139 151 IPR017956 GO:0003677(InterPro)
Mch11g0030 356 SMART AT_hook_2 86 98 IPR017956 GO:0003677(InterPro)
Mch11g0030 356 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 57 334 IPR039605 GO:0003680(InterPro)
Mch11g0030 356 MobiDBLite consensus disorder prediction 316 356 - -
Mch11g0030 356 CDD DUF296 165 279 IPR005175 -
Mch11g0030 356 MobiDBLite consensus disorder prediction 292 356 - -
Mch11g0030 356 MobiDBLite consensus disorder prediction 79 154 - -
Mch11g0030 356 MobiDBLite consensus disorder prediction 107 123 - -
Mch11g0030 356 SUPERFAMILY AF0104/ALDC/Ptd012-like 164 289 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1643 Mch-Chr10:16564785 Mch11g0030 Mch-Chr11:223655 1.36E-67 dispersed
Mch11g0030 Mch-Chr11:223655 Mch8g1968 Mch-Chr8:21661907 1.13E-141 dispersed
Mch11g0030 Mch-Chr11:223655 Mch6g2172 Mch-Chr6:24087948 1.78E-73 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0030 - - - 0.0