Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0043 ATGAGTTTGATTTGGACACTTTTGTTGTTGTCTCTCTATTGTGGCATTTTCCCTCTTGGGTTAGGCAAAAACATTTCGTCAAGACCATCAGTCGTGAATATTGGAGCTATTTTCTCGTTTGATTCTACCATTGGAAAAGTTGCCAAGATTGCCATAGAAGAAGCTGTGAAAGATGTGAATGCTGATCCCACCATTCTTCCTGGAACCAACCTTTGGTTACAAATGCAGAATTCCAACTGTAGTGGGTTTCTGGGCATGGTTGAAGTTTTGCAACTCATGGAGAATGACACCGTTGCCATCTTAGGCCCTCAATCTTCTGTGGTTGCCCACATTTCATCGCAAGTTGCAACTGAGTTCCAAGTTCCTCTAGTCTCATTTGCAGCCACAGATCCTACTCTCTCTGCCCTTCAATTTCCCTTCTTTGTGAGGACCGCACAGAGTGATTTGTTTCAAATGTCTGCAGTCGCTGAGATTGTTGAGTATTATGGTTGGAAGGAGGTTATTGCCATATACATCGATGATGATTATGGGTGGAATGGTATTGCAACATTGGGTGATAAACTTGCTGAAAAGCGTTGTAAAATCACATATAAGTTGGGTATTAGTCCAGAATCTGGGGTTGATCGAGCCCAAGTTATGGATCAACTTGTTAAGGTTGCACTTATGGAATCTAGAGTTATGGTTCTCCACGTGAACCCCACATTAGGCACTTTAGTCTTTTCAGTGGCTAAATACCTTCAAATGGTGGGCAATGGATATGTATGGATAACAACTGATTGGCTTTCGTCTTTATTAGACAGTGTTGTTCCTTTCTCTCTTGAGACCATGGAGATGATGCAAGGAGTTCTTTCTTTACGCCAGCACACAGCAGATTCAGATAAAAAGAGAGCTTTTCTTTCCAGGTGGAATAAGTTAACTGGTGGCTCTTTGGGTCTGAATTCTTATGGTCTATATGCTTATGACTCTGTTTGGGTGGTTGCTCGTGCCATCCACGAATTTTTGAATCAAGGTGGGGTCATTACACATTCTAATAATTCCAGGCTGCATCTTGGTGAAAGCGGTAATCTTCATCTTGAAGCCATGACTATCTTTGATGGTGGAAATCAACTGCTGAATAATATATTGCAGAGTGACTTTGTTGGTTTGACTGGTGCCATTAAGTTTGATCATGATAGATCCCTTGTTCATCCTGCATATGATATAATTAATGTCATTGGGACTGGATCAAGAAGGGTCGGTTACTGGTCCAACTACTCTGGTTTATCAATTGATGCACCGGAGACACTCTATTCCAAACCACCCAATCGCTCACACGCAAATCAGAAGCTGTACGAGGTTATATGGCCAGGAAATACAATAGAAAAGCCTCGAGGATGGGTATTCCCAAACAATGGGAAGCTACTAAACATTGGAGTGCCACTTCGGGTCAGTTACAAGGAGTTTGTAACACAAGTCAAAGGGGTCGACAATTTCCAAGGTTTCTGCATTGATGTGTTTACAGCTGCTGTAAATTTATTACCTTATGCTGTCCCGCACCGATTTATAGCCTTTGGAGATGGCCACCAGAATCCAAATTACACAGAACTTGTGTACCGGATCACAACTGGCAAATTTGATGCTGTTGTAGGAGACATAGCCATTGTCACAAGCCGTACAAAGCTTGTGGATTTTACTCTGCCATATACTGCTTCTGGACTAGTTGTTGTGGCCCCATTCAAAAAACTGAACACTGGTGCTTGGGCCTTCCTGCATCCATTTTCTCCAGCCATGTGGATGGTCACTGCTAGTTTCTTCATATTTATTGGAATAGTCGTCTGGATTTTGGAGCACAGGACGAACGACGAATTCAGAGGCCCACCTAAAAGACAATGCATCACAATTTTATGGTTTAGCTTCTCAACTCTATTTTTTGCCCATAAGGAGAACACAATTAGCACTCTTGGCCGCCTAGTGCTGATCATATGGCTCTTCGTGGTTTTGATAGTAAATTCTAGCTACACTGCTAGTTTAACATCCATTCTCACTGTGCAGCGGCTATATTCTCCGATCACAGGTATTGAAACCTTGAGAGTAGGTGACGAACCGATAGGTTTCCAAGTTGGATCTTTTGCTGAACGTTATTTGCGTGAGGAGCTCAACATATCTAAATCTAGGCTTCGGTCTCTTGGATCACCCGAAGAATATACCAAGGCACTTGAGCTTGGCCCTAAGAGGGGAGGTGTTGCTGCCATAGTTGATGAACTTCTATATATTGAGAGTTTCCTCTCGAGACAGTGCACATTCAGAATTGTTGGTCAAGAGTTCACAAAAAGTGGCTGGGGTTTCGCATTCCCGCGGGACTCTCCCTTGGCCATAGACTTGTCAACTGCCATTTTGCAGCTGTCAGAGAATGGCGATCTGCAACGGATTCATGACAAATGGCTTGTGAAAAGCAGCTGCAGCACGGACGATCTTGAATCAGACCGGCTTCAACTTAAGAGCTTCTGGGGCCTCTTTCTAATCTGTGGGATTGTTTGCTTCATCGCCCTTGCCATATACTGCTATCAGGTTATTCGTCAGCTGTACCGTTCCGATTCAAAAGATCCTAATTTGTCTAGCAGTAGCGGATCACGTTCAAACCGTCTCCGACGAATTATATCATTGTTGGATGAGAAGAAAGAACCTTCTAAAAGGGAAAGCAAGCGAAGGAAAGTTGAGAAATCATCTGAAAACGATAAGTATGATGATCACTTGGAGGTAAATCCTTAA 2748 42.98 MSLIWTLLLLSLYCGIFPLGLGKNISSRPSVVNIGAIFSFDSTIGKVAKIAIEEAVKDVNADPTILPGTNLWLQMQNSNCSGFLGMVEVLQLMENDTVAILGPQSSVVAHISSQVATEFQVPLVSFAATDPTLSALQFPFFVRTAQSDLFQMSAVAEIVEYYGWKEVIAIYIDDDYGWNGIATLGDKLAEKRCKITYKLGISPESGVDRAQVMDQLVKVALMESRVMVLHVNPTLGTLVFSVAKYLQMVGNGYVWITTDWLSSLLDSVVPFSLETMEMMQGVLSLRQHTADSDKKRAFLSRWNKLTGGSLGLNSYGLYAYDSVWVVARAIHEFLNQGGVITHSNNSRLHLGESGNLHLEAMTIFDGGNQLLNNILQSDFVGLTGAIKFDHDRSLVHPAYDIINVIGTGSRRVGYWSNYSGLSIDAPETLYSKPPNRSHANQKLYEVIWPGNTIEKPRGWVFPNNGKLLNIGVPLRVSYKEFVTQVKGVDNFQGFCIDVFTAAVNLLPYAVPHRFIAFGDGHQNPNYTELVYRITTGKFDAVVGDIAIVTSRTKLVDFTLPYTASGLVVVAPFKKLNTGAWAFLHPFSPAMWMVTASFFIFIGIVVWILEHRTNDEFRGPPKRQCITILWFSFSTLFFAHKENTISTLGRLVLIIWLFVVLIVNSSYTASLTSILTVQRLYSPITGIETLRVGDEPIGFQVGSFAERYLREELNISKSRLRSLGSPEEYTKALELGPKRGGVAAIVDELLYIESFLSRQCTFRIVGQEFTKSGWGFAFPRDSPLAIDLSTAILQLSENGDLQRIHDKWLVKSSCSTDDLESDRLQLKSFWGLFLICGIVCFIALAIYCYQVIRQLYRSDSKDPNLSSSSGSRSNRLRRIISLLDEKKEPSKRESKRRKVEKSSENDKYDDHLEVNP 915
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 274252 281223 - MC11g0038 Mch11g0043 678977
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0043 915 FunFam Glutamate receptor 463 579 - -
Mch11g0043 915 Pfam Receptor family ligand binding region 49 406 IPR001828 -
Mch11g0043 915 SUPERFAMILY Periplasmic binding protein-like I 27 460 IPR028082 -
Mch11g0043 915 FunFam Glutamate receptor 579 709 - -
Mch11g0043 915 Gene3D - 50 396 - -
Mch11g0043 915 CDD GluR_Plant 466 808 - -
Mch11g0043 915 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 319 331 - -
Mch11g0043 915 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 105 133 - -
Mch11g0043 915 PRINTS Metabotropic gamma-aminobutyric acid type B receptor signature 45 61 - -
Mch11g0043 915 Gene3D - 460 577 - -
Mch11g0043 915 SMART GluR_14 469 810 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Mch11g0043 915 Gene3D - 578 711 - -
Mch11g0043 915 SUPERFAMILY Periplasmic binding protein-like II 446 810 - -
Mch11g0043 915 FunFam Glutamate receptor 147 300 - -
Mch11g0043 915 Pfam Ligand-gated ion channel 809 838 IPR001320 GO:0015276(InterPro)|GO:0016020(InterPro)
Mch11g0043 915 Gene3D - 737 815 - -
Mch11g0043 915 MobiDBLite consensus disorder prediction 880 915 - -
Mch11g0043 915 Gene3D - 147 421 - -
Mch11g0043 915 Pfam Bacterial extracellular solute-binding proteins, family 3 524 588 IPR001638 -
Mch11g0043 915 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 32 889 IPR015683 GO:0005886(PANTHER)|GO:0015276(PANTHER)|GO:0038023(PANTHER)
Mch11g0043 915 CDD PBP1_GABAb_receptor_plant 33 422 IPR044440 -
Mch11g0043 915 PIRSF IGluLR_plant 1 914 IPR017103 -
Mch11g0043 915 FunFam Glutamate receptor 705 812 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0043 Mch-Chr11:274252 Mch2g0636 Mch-Chr2:4344135 0 dispersed
Mch1g1654 Mch-Chr1:17431956 Mch11g0043 Mch-Chr11:274252 0 wgd
Mch11g0043 Mch-Chr11:274252 Mch4g0391 Mch-Chr4:2484916 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0043 K05387 - csv:101204862 1586.24