Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0047 CAATCCAGGGGGACTAATATGGATCAGTTCGACGCATTCTTTAGGAGAGCCGATTTGGACGGTGACGGAAGGATTAGTGGAGCTGAAGCTGTTTCTTTCTTTCAGGGCTCCAATTTGCCTAAAAATGTTCTTGCGCAGATATGGATGCATGCTGATCAGAGAAAAACAGGTTTCCTTGGTCGACCAGAATTTTATAATGCTCTCCGACTCGTAACTGTTGCACAAAGTAAGCGAGATCTGACGCCTGAAATTGTTAAGGCAGCACTATACGGTCCTGCTGCAGCGAAAATTCCCCCTCCAAAGATTGATCTTTCAGCTGTACCTGCCTCTCAATCAAATTCAATGCCGGCTGCATCTTCTCCACAGATGAATATACCAGCACCAACCGCATCTCAAAATTTTCGCTTTAGAGGACAAGCGGCTCCAAATGCGGGTGTAAATCAGCAGTACTTTCCAGCCCAGCCAAACCCTTCCATGAGGTTACCTCAAGCCACACCTGGTGGTGTTGCTTCCAATATGCAACTGGTCAGTGCTACTTCTGAACCCTCTGGAGGAGGAAATGTAGGGGGATCCAATCTTTCAAACCCAAATGACTGGCTCAATGGAAGGCCAGGTGCCCCTGCTGCTGGGCCTAGAGGAGTTAGTCCTCCAGTGCCTTCCCCAGCTACATCGTTATCATCAGCTTTAGTGCCTTTACAGCCTATGCCTAACGATAGAGCATCAGTTGTTTCTGGAAATGGATTTACTTCTAAGTCGGCATATGGTCCTGATATGTTTTCTGTAACTCCATCTCCACCTAGACCAGAATCTTCTGGACTCAACAATGCAGCTAATAGTAGTATTAGCCCATCAGCCATTGTTCCAGTTTCTGGTGTATCCCAACCTTTAAGTAAGCATAACTCAATGGATTCATTGCAGAGTGCATTCGTTTCAAGGCCATTATCTGGTGCACAGTTTCAGCTCTCTCAGTCATCACCGGAACCTAGCAAGGAGGTTCCAGCAACAGGTCCATCAGCACTTTTATCTTCTGGGATCACAACTGGAACCAGGAATTCTACTCCTGAAAATGCACAGGTTACTTGGCCAAAGATGAAACCAACTGATGTTCAGAAGTACACGAAAGTTTTTATGGAAGTAGATACTGACAGAGATGGAAGAATAACTGGTGAGCAGGCAAGGAATCTATTTTTAAGTTGGAGGTTACCTAGAGAGGTCTTGAAGCAGGTGTGGGACTTATCTGATCAAGACAATGACAGCATGCTTTCTCTCAGAGAGTTTTGTTTTGCTTTATATCTAATGGAACGTTACAGGGAAGGTCGGCCTCTTCCAGCTGTGCTTCCAAATAATGTAATGTATGATGAGACTCTGCTGTCCATGACAGGACAGTCAAACATTGTCCATCCAAATGCAGCTTGGGGTCCTCATCCTGGATTTGGACACCAGCAACCTGTGGTCACCGCTCGGTCAATGGCACCACCAACTCCCGGACCGAGGCCCCCAACAAGTGTTATTGCTTCCAAGGCTGATGGTGCTAAATTATCCAATGATCAGAAATCAAGGGCTCCAGTGTTGGAGGATTCATTTTTGGACCAGTCTGGCAAGGGCCAACCAAATTCTGCTAGCTCAAATGCTCAAGAGGCTACAGCATCAGAGAAAAAGGCATTTCCTTATTTCTATCTGTCAAATTCCATGATTTTCCCTGGAGGGGAACCCGCGAATGTTATTTTGGATTCAAGAGAAAAGGTTGAATTCTATCGCACAACGATGCAGGAACTTGTTCTACATAAAAGCAGATGTGACAATAGATTGAATGAGATCACAGAAAGGGCATCAGCTGACAAGCGCGAGGCAGAATCATTGGCAAAAAAATACGAGGAGAAGTACAAGCAAGTGGCTGAAATAGCATCTAAGCTAACCATTGAAGAAGCAAAGTATCGTGATGTTCAGGAAAGGAAAACAGAGTTGCATCAAGCAATTATTAAAATGGAACAAGGAGGAAGTGCAGATGGTATTCTTCAGGTCCGAGCTGATCGAATACAATCTGATATTGAGGAGCTCATGAAGGCTTTAACTGAACGTTGTAAGAAACATGGATTTGATGTTAAGTCGGCAGCTATAATTGAACTTCCAGTAGGTTGGCAACCTGGAATTCCGGATGATGCAGCTATTTGGGATGAAGAGTGGGATAAGTTTGAAGATGAAGGGTTTTCCAATGATCTTAATCTTGACGCAAAAGCTGTTTTGGCCTCAAAACCAAATATATCAGCCAGTCAGGGTGAAAAGGATCTAGCAGATTATAACTCAACCCCTGATTCACCATCAAATTCAAATGGCAAAGTGGGGAAGTTCTCGAGTACCATCAATCGTGGCCTTGAGAGCGAATCTGTGTATAGCCACAGTGAAGATGAATCAGCAAGAAGTCCTCCATATGGCAGTCCAGCTGCAAAGACATGTCTAGAGAGCCCTTCTCATGACTTTTCAGATGCTGGTTATGAAAAAAGTCCGGAAGCACATAATAATGCATTCGTAATTTTTATACTTGTACCTTCTTGCAACTCTTTCATTGAAATTGAACCATCCTTTTTATATTATGGTTCTCTGTTTATTTCTGGCATCAGAAGTTTCAATGAGTCAACTTGGGGCGCCTTTGACAATAATGACGATGTGGACTCAGTTTGGGGAATAAAACCAGTTAATACCAAGGAGCCAGACTCTGACAAGCACAGAGATTTCTTTGGGTCTAGTGATTTCGATACGGGCTCCGCCAAAACAGGATCCCCGAATGCAGATAGCTTCTTCCAGAGAAAAAGCCCATTTTTTGAGGAATCTGTCCCTCCCACGCCTCTCTCTAGATTTGGCAACTCTTCCCCCCAATATAGCGATGCTGGGGATCACTTCTTTGACAACTCCGCCAGGTTTGATTCTTTCAGCATGCAGGATGGCAGTTTTTCTCCGCAACGTGAGAAGTTCAGCAGGTTTGATTCCATGAGCAGTTCTCGAGATTTCGGCCATTATCAAGAGAAGTTTTCTAGGTTTGATTCCATGAGCAGTTCTCGAGACTTTGGCCATAATCAAGATAAGTTTTCTAGGTTTGATTCCATGAGCAGTTCTCGAGATTTTGGTCATAATCAAGAGAAGTTTTCTAGATTTGATTCTATCAGTAGTAGCATGGACTTCGGCCAGAGTAGCCAGAAGCACACCAGGTTCGACTCCGTTGGCAGCTCCAGAGATTTCGGGCACAGTGACTTCTCTTTTGATGACTCAGACCCATTTGGGTCCTCAGGACCGTTTAAAGTTTCATCAGATAATCAAAGTCCGAAGAAAAGTTCTGATAGTTGGAGAGCTTTCTAA 3351 44.23 QSRGTNMDQFDAFFRRADLDGDGRISGAEAVSFFQGSNLPKNVLAQIWMHADQRKTGFLGRPEFYNALRLVTVAQSKRDLTPEIVKAALYGPAAAKIPPPKIDLSAVPASQSNSMPAASSPQMNIPAPTASQNFRFRGQAAPNAGVNQQYFPAQPNPSMRLPQATPGGVASNMQLVSATSEPSGGGNVGGSNLSNPNDWLNGRPGAPAAGPRGVSPPVPSPATSLSSALVPLQPMPNDRASVVSGNGFTSKSAYGPDMFSVTPSPPRPESSGLNNAANSSISPSAIVPVSGVSQPLSKHNSMDSLQSAFVSRPLSGAQFQLSQSSPEPSKEVPATGPSALLSSGITTGTRNSTPENAQVTWPKMKPTDVQKYTKVFMEVDTDRDGRITGEQARNLFLSWRLPREVLKQVWDLSDQDNDSMLSLREFCFALYLMERYREGRPLPAVLPNNVMYDETLLSMTGQSNIVHPNAAWGPHPGFGHQQPVVTARSMAPPTPGPRPPTSVIASKADGAKLSNDQKSRAPVLEDSFLDQSGKGQPNSASSNAQEATASEKKAFPYFYLSNSMIFPGGEPANVILDSREKVEFYRTTMQELVLHKSRCDNRLNEITERASADKREAESLAKKYEEKYKQVAEIASKLTIEEAKYRDVQERKTELHQAIIKMEQGGSADGILQVRADRIQSDIEELMKALTERCKKHGFDVKSAAIIELPVGWQPGIPDDAAIWDEEWDKFEDEGFSNDLNLDAKAVLASKPNISASQGEKDLADYNSTPDSPSNSNGKVGKFSSTINRGLESESVYSHSEDESARSPPYGSPAAKTCLESPSHDFSDAGYEKSPEAHNNAFVIFILVPSCNSFIEIEPSFLYYGSLFISGIRSFNESTWGAFDNNDDVDSVWGIKPVNTKEPDSDKHRDFFGSSDFDTGSAKTGSPNADSFFQRKSPFFEESVPPTPLSRFGNSSPQYSDAGDHFFDNSARFDSFSMQDGSFSPQREKFSRFDSMSSSRDFGHYQEKFSRFDSMSSSRDFGHNQDKFSRFDSMSSSRDFGHNQEKFSRFDSISSSMDFGQSSQKHTRFDSVGSSRDFGHSDFSFDDSDPFGSSGPFKVSSDNQSPKKSSDSWRAF 1116
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 297296 306915 - MC11g0042 Mch11g0047 678981

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0047 1116 Gene3D - 4 102 - -
Mch11g0047 1116 MobiDBLite consensus disorder prediction 146 279 - -
Mch11g0047 1116 MobiDBLite consensus disorder prediction 108 129 - -
Mch11g0047 1116 MobiDBLite consensus disorder prediction 531 547 - -
Mch11g0047 1116 SUPERFAMILY EF-hand 356 451 IPR011992 -
Mch11g0047 1116 MobiDBLite consensus disorder prediction 758 794 - -
Mch11g0047 1116 MobiDBLite consensus disorder prediction 978 999 - -
Mch11g0047 1116 MobiDBLite consensus disorder prediction 528 547 - -
Mch11g0047 1116 MobiDBLite consensus disorder prediction 758 819 - -
Mch11g0047 1116 Pfam Cytoskeletal-regulatory complex EF hand 362 433 IPR000261 GO:0005515(InterPro)
Mch11g0047 1116 SMART eh_3 361 456 IPR000261 GO:0005515(InterPro)
Mch11g0047 1116 SMART eh_3 1 94 IPR000261 GO:0005515(InterPro)
Mch11g0047 1116 MobiDBLite consensus disorder prediction 146 199 - -
Mch11g0047 1116 Coils Coil 603 641 - -
Mch11g0047 1116 ProSiteProfiles EH domain profile. 368 451 IPR000261 GO:0005515(InterPro)
Mch11g0047 1116 Pfam EF hand 11 29 IPR002048 GO:0005509(InterPro)
Mch11g0047 1116 PANTHER EH DOMAIN 4 993 - GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0005886(PANTHER)|GO:0006897(PANTHER)|GO:0016197(PANTHER)
Mch11g0047 1116 ProSiteProfiles EF-hand calcium-binding domain profile. 367 402 IPR002048 GO:0005509(InterPro)
Mch11g0047 1116 MobiDBLite consensus disorder prediction 1094 1116 - -
Mch11g0047 1116 MobiDBLite consensus disorder prediction 239 257 - -
Mch11g0047 1116 SUPERFAMILY EF-hand 6 81 IPR011992 -
Mch11g0047 1116 CDD EH 10 76 IPR000261 GO:0005515(InterPro)
Mch11g0047 1116 CDD EH 372 438 IPR000261 GO:0005515(InterPro)
Mch11g0047 1116 ProSiteProfiles EH domain profile. 6 96 IPR000261 GO:0005515(InterPro)
Mch11g0047 1116 MobiDBLite consensus disorder prediction 470 505 - -
Mch11g0047 1116 MobiDBLite consensus disorder prediction 264 279 - -
Mch11g0047 1116 Gene3D - 362 451 - -
Mch11g0047 1116 ProSiteProfiles EF-hand calcium-binding domain profile. 5 40 IPR002048 GO:0005509(InterPro)
Mch11g0047 1116 SMART efh_1 43 71 IPR002048 GO:0005509(InterPro)
Mch11g0047 1116 SMART efh_1 405 433 IPR002048 GO:0005509(InterPro)
Mch11g0047 1116 SMART efh_1 371 399 IPR002048 GO:0005509(InterPro)
Mch11g0047 1116 SMART efh_1 9 37 IPR002048 GO:0005509(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0047 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1358 Mch-Chr10:12073843 Mch11g0047 Mch-Chr11:297296 4.77E-12 transposed
Mch3g0792 Mch-Chr3:12025006 Mch11g0047 Mch-Chr11:297296 2.96E-14 transposed
Mch11g0047 Mch-Chr11:297296 Mch4g0397 Mch-Chr4:2526028 1.67E-216 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g78 . . . . . . . . . . Cma01g02025 Cma09g00044 Car01g01591 . . Cpe06g00014 . . . . . . . . . . . . . . . . . Cone17ag1459 Cone20ag0016 Lsi04g01819 Csa04g02715 . . . . . . . . . . . . Cmo09g00045 . . . Car09g00036 . Cpe02g00029 Bhi09g02853 Tan01g5126 Cmetu07g1818 . Hepe01g2350 Mch11g0047 . Cla11g01832 Cam11g1899 Cec11g1925 Cco11g1934 Clacu11g2063 Cmu11g1868 Cre11g2276 . . Chy07g00404 Cme07g00044
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005327 2 2 2 4 1 0 2 0 0 1 1 1 2 1 1 2 0 2 2 1 1 1 1 1 1 1 1 0 1 1 36