Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0049 ATGGTATATGCAAAAGTGGGGACGAACCCTAAATCCAAGGCTAATCAGACTTCTAAGCTCACGAAGAATGTGTATCCGATCGGTGGCATCCAAGTGGAATTCCCATACCGGCCATACGGTTCGCAGCTCGCATTCATGGGCAGAGTTATATCAACCCTTGATCGAGCCCAGCGGGAGGGCCATTGCCACGCATTGCTGGAGTCTCCGACTGGAACTGGGAAGTCGCTTTCGCTTCTGTGTTCGAGTCTCGCTTGGCAGAAGAGCTACAAATTAAAAAGTCAGGATGCTAATTCCTGTCAGTCGAAGCCCGCTCCAGAGGCTGCGACTGATCCTCTCGCTTTTGGCGGTGGATTTATTCCCGAAGTGCAGCCGTCAATGTCTGTAAATACGGAGTCATCTCATCCAGCGCCAAACAACAAAAGTCAGAAGAAAAAGACAACCCCAACTATATACTATGCCTCGAGGACACATTCACAGATATCACAAGTGATCCGTGAGTATAGAAAGACTACTTATCGAGTGCCCATGGCAGTGTTGGCATCAAGGAAACATTTCTGCACAAATCCTTATGTACGAGGGAAAGAGAATATAGATGAAGAATGCAAACTATTATTGAAGGATCAGGATGCAGGATGCTGTGAATTTAAAAATGCAAACAAGGTCAAAAGTCATCCAACCCTTCAGAAAGGAGGTTGTCATGAGGTTCACGACATTGAGGATTTGGTGAAAGTTGGAGAAATTGTAAAAGGTTGTTCATATTATGCAGCTCGATCTATGGCAGATGATGCACAGCTGGTGTTTTGCCCATATAGCTATATTATCAATCCAGTTATTCGAGGAGCAATGGATGTAGATATTAAGGGTGCCATTGTGATCCTTGACGAAGCCCACAATATAGAGGATATTGCTCGTCATGCTGGTAGTGTGGATGTCGAAGAGGATACTTTAAATAAATTGCAGATGGAATTAGATCAACTATGTCATACTGATTCTTTGGTATACCAGCCACTGTATGAGATGACACAGGATCTCATAAGTTGGATTGATCAGAGGAAGACCACACTACAGAAGCGTGAGTTTCAGCATTATGTCACCTGTTGGACCGGCAATCATGCTCAAAGAGAGCTCCAAGAAGCTAATATAACTCAACAATGCTTCCCAATTTTGCTTGAATGTGCAACGAAGGCAATTAAAGCAGCTTCAGATACGGAGTCTGATACTGCACATTTGAGTGGCCTGTCAGTGATAACGCTGGAAGGGTTATTTTCTTCATTGACGTATTTTTTCTCAAGAAATGGTTGCCACATGTCAGATTACCAGCTTGCATTACAACGCTATGTTAAAAGAGATCCTGGAAAAGTTTATGTTGAATGGACGCATACTTTAAGTTTGTGGTGCTTGAATCCAGCTGTCGTATTTAGAGACATCGCCGATCTTTCGTTATCAGTTATCTTAACATCTGGGACCCTGTCACCTATGAATTCCTTTTCATCTGAACTAGGAGTTCAGTTCGGAACTTCACTGGAAGCTCCTCATGTAATTGACGTGGAATCTCAGGTCTGGCCAGCTATTATATCAACTGGTCCAGGAAACTATCCACTGAATGGAAGTTATAAAACAGCTGATGGATATGCATTCCAGGATGCTCTAGGAAAATCTTTGGAGGAGATATTTTTGATCGCTCCTGGTGGCTGTCTTGTGTTCTTCCCTAGTTACAAGCTGATGGAGAAACTCCAAAATCGTTGGTCTGAAACTGGTCAATGGTCTCGACTGAATGCAAGGAAGTCCCTTTTTGTTGAGCCAAGAGGAGGAAGTCAAGAGGATTTTGATTCCATTTTGAAAGGTTATTATGATACCATACGTCTTGGTGATAACTTTGCAGTCGGGAAGAAGAGACGAGGTAAGAAGGTTAGACCCAATTACCCGTGTGTGACTGGCTGTGAAAATCCCAAGGAAGGTGCGGCATTCTTTGCAGTTTTCCGAGGAAAGGTCTCAGAAGGAATAGACTTTTCTGATGATAATGCTAGAGTGGTTATAATTGTTGGAATTCCATTTCCAAATATAAACGATATTCAAGTTTCATTAAAAAAGAAGTTCAATGACACATATAAACTGTCCAAAAATCTTTTAAGTGGAAATGAGTGGTACTGTCAACAGGCCTTCCGAGCTTTAAATCAAGCTGCAGGACGTTGTATTCGACACAAGTTTGACTATGGTGCCATAATCTTATTAGATGAGCGTTTCCAGGAAGAGAGGAACAGGACGTACATTTCAAAGTGGCTAAGAAAATCTGTTAAACAATGTGATAACTTTGAACTGTCAATGGAGGGGCTGAAATCCTTTTTCGGCAACATAAAGGAGCGCATTAACAAGAGTACAGAAAGTGACTTGCAGAAATCTGAGAATGAGGAACACATCACTTCCACAGACCCTAGTAGTTTTAGAAGAAAAGAGATTGAGAAACTTGACAAGTTAAATTATTGTGGGCAGAAAGCTCGTGAGGATGCTAAAAACTGCATAATTGATCTGGAGTGCTGTGTTGAAGAGGACACGAGGAACCATGAGTTTCTATCTATGACAACCGTCCTCGAAGTTCCAGATTCACCAATTGTGCAGGAGACTCCTTGTGTTGATGTTGGAGGTGTCACTAGTCCAGGAGACTCCAAAGATGGAAGATCAAGTTCAACCATAATCGAGGCCTATTCTGAGTTTCCTGATCAATTATCTATTTATTCATTACCTTTAACCAAATCAATAAAGTCTACTCTTACGTCCGAAACTTCAATGCTACATACTCCTGAAAGAAATGTTTCTTCAAATGGCTACAGCTTTGGACCAGAAATAGAATCTTCTTTGAATATGAGTGTAAATTCCCATACCCAGAAAAGGAGGAAGTCTGTGGGTTTAACAATTGCGAAATTTGTTCAAGAAGAGTCTGCTGTTGATCCCAAAACCAAAACTCCCGAATGCAATAGTGTGGACAGAGGCTCAATAATCAGCAGAAATTCAAATAGCCTAAAAGATATTAGTTATGAGATTCTTCCCACAGAAAAGAAGTCTAAGAGTTCAAATGTTCCACAACTACTCAAGCTGAATGACTCCATTCCTGTTTGTCCGTCTTCTGGCCCTCCTTTGGACAAAACGTTGCATCTGTCTTGTGTACTTTGTAGAAGCCCATTGGGCCGTCCGGAAAACCATTCATATGTGACGTGCTCATTTACAATGTCATCAAAAACACACTTAATATCTATATACAAGGAAAGGTTGAAGCCTCAAACTGCCAATTCATCAAGTATACCAGTTCTTATGACAGACATCATGTTTGTTAACCAGCCGCTCCTAGTTAGGGCTTCAAAAGATGCAGGATGTGGTATCTGGAGCAAGGAGGATGGTTGTGTATTCAATTGTGTCTTTTGCCCCTTCTGCCCTACTGACAATTGTATTGGTGTACAGATCATGGCAACTGATGCGTCAAACATTCAGTTACTTAATAAGGTGATGTTTTACTTGGAGTGTTTGGAGATCCAAGATCTAGAAGCACATACAGGAAAGGCTTCACTAAACACGGAGTTATTACCTGTTAGTAGCTCAGCTAAGAAAAAGTTGGCCGTCTTGGAACCCATTGAAAAGTTTTCATACTCCCCTGGCCCGCTAACCTCTGGAGGCTGGAGGTCTACAAAATTGAAGGCCAGAAGGAAAGCAACGTCATAG 3711 41.88 MVYAKVGTNPKSKANQTSKLTKNVYPIGGIQVEFPYRPYGSQLAFMGRVISTLDRAQREGHCHALLESPTGTGKSLSLLCSSLAWQKSYKLKSQDANSCQSKPAPEAATDPLAFGGGFIPEVQPSMSVNTESSHPAPNNKSQKKKTTPTIYYASRTHSQISQVIREYRKTTYRVPMAVLASRKHFCTNPYVRGKENIDEECKLLLKDQDAGCCEFKNANKVKSHPTLQKGGCHEVHDIEDLVKVGEIVKGCSYYAARSMADDAQLVFCPYSYIINPVIRGAMDVDIKGAIVILDEAHNIEDIARHAGSVDVEEDTLNKLQMELDQLCHTDSLVYQPLYEMTQDLISWIDQRKTTLQKREFQHYVTCWTGNHAQRELQEANITQQCFPILLECATKAIKAASDTESDTAHLSGLSVITLEGLFSSLTYFFSRNGCHMSDYQLALQRYVKRDPGKVYVEWTHTLSLWCLNPAVVFRDIADLSLSVILTSGTLSPMNSFSSELGVQFGTSLEAPHVIDVESQVWPAIISTGPGNYPLNGSYKTADGYAFQDALGKSLEEIFLIAPGGCLVFFPSYKLMEKLQNRWSETGQWSRLNARKSLFVEPRGGSQEDFDSILKGYYDTIRLGDNFAVGKKRRGKKVRPNYPCVTGCENPKEGAAFFAVFRGKVSEGIDFSDDNARVVIIVGIPFPNINDIQVSLKKKFNDTYKLSKNLLSGNEWYCQQAFRALNQAAGRCIRHKFDYGAIILLDERFQEERNRTYISKWLRKSVKQCDNFELSMEGLKSFFGNIKERINKSTESDLQKSENEEHITSTDPSSFRRKEIEKLDKLNYCGQKAREDAKNCIIDLECCVEEDTRNHEFLSMTTVLEVPDSPIVQETPCVDVGGVTSPGDSKDGRSSSTIIEAYSEFPDQLSIYSLPLTKSIKSTLTSETSMLHTPERNVSSNGYSFGPEIESSLNMSVNSHTQKRRKSVGLTIAKFVQEESAVDPKTKTPECNSVDRGSIISRNSNSLKDISYEILPTEKKSKSSNVPQLLKLNDSIPVCPSSGPPLDKTLHLSCVLCRSPLGRPENHSYVTCSFTMSSKTHLISIYKERLKPQTANSSSIPVLMTDIMFVNQPLLVRASKDAGCGIWSKEDGCVFNCVFCPFCPTDNCIGVQIMATDASNIQLLNKVMFYLECLEIQDLEAHTGKASLNTELLPVSSSAKKKLAVLEPIEKFSYSPGPLTSGGWRSTKLKARRKATS 1236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 313976 324265 + MC11g0044 Mch11g0049 678983

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0049 1236 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 58 744 IPR027417 -
Mch11g0049 1236 Pfam DEAD_2 152 316 IPR010614 GO:0003677(InterPro)|GO:0003678(InterPro)|GO:0005524(InterPro)
Mch11g0049 1236 MobiDBLite consensus disorder prediction 1213 1236 - -
Mch11g0049 1236 MobiDBLite consensus disorder prediction 793 813 - -
Mch11g0049 1236 Pfam Helicase C-terminal domain 555 763 IPR006555 GO:0003676(InterPro)|GO:0004386(InterPro)|GO:0005524(InterPro)|GO:0006139(InterPro)|GO:0016818(InterPro)
Mch11g0049 1236 SMART Cxpdneu3 572 750 IPR006555 GO:0003676(InterPro)|GO:0004386(InterPro)|GO:0005524(InterPro)|GO:0006139(InterPro)|GO:0016818(InterPro)
Mch11g0049 1236 SMART deadxpd 30 358 IPR006554 GO:0003678(InterPro)|GO:0016818(InterPro)
Mch11g0049 1236 Coils Coil 309 329 - -
Mch11g0049 1236 PANTHER DNA REPAIR DEAD HELICASE RAD3/XP-D SUBFAMILY MEMBER 27 801 IPR045028 GO:0003678(PANTHER)|GO:0005634(PANTHER)|GO:0006289(PANTHER)|GO:1990918(PANTHER)
Mch11g0049 1236 CDD SF2_C_XPD 518 748 - -
Mch11g0049 1236 Gene3D - 36 356 IPR027417 -
Mch11g0049 1236 FunFam Fanconi anemia group J protein-like isoform E 139 348 - -
Mch11g0049 1236 FunFam Fanconi anemia group J protein homolog 531 776 - -
Mch11g0049 1236 Gene3D - 531 776 IPR027417 -
Mch11g0049 1236 MobiDBLite consensus disorder prediction 124 146 - -
Mch11g0049 1236 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-2 domain profile. 28 344 IPR014013 GO:0005524(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0049 K15362 - - csv:101217839 2102.41
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0049 Mch-Chr11:313976 Mch9g0358 Mch-Chr9:2630285 2.23E-102 dispersed
Mch11g0049 Mch-Chr11:313976 Mch9g0343 Mch-Chr9:2550658 1.61E-50 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g81 . Blo12g00850 . Bda03g00325 . Bpe04g00285 Bma04g00292 . . . . Cma09g00046 . . . Cpe06g00016 . . . . . . . . . . . . . . . Cone4ag2025 . . . Lsi04g01816 Csa04g02713 . . . . . . . . . . Sed13g2203 . Cmo09g00048 . . . Car09g00038 . . Bhi09g02869 Tan01g5121 Cmetu07g0880 . Hepe01g2348 Mch11g0049 . Cla11g01831 Cam11g1898 Cec11g1923 Cco11g1933 Clacu11g2062 Cmu11g1867 Cre11g2275 . . Chy07g00402 Cme07g00047
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007710 1 2 1 1 1 0 1 0 0 2 1 1 1 2 2 1 0 1 1 1 2 1 1 2 1 1 1 1 1 1 32