Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0059 AGAGAGATCGCTCCGGCTTTTAATGGAGGTTTTTCGAAGTCGTCTCTCTCTCGCTTGTTTGAAAGTGGAAGCGCGGGCCGGCATCCAGTAGCAACTGTAACCCGTTTGATAATAAGCCTCAAACGAAATTCGAGAGTTCTTGATTTTAGAAGGTTAGTTTTTATTCACGATCTGGGCATTGCGTCACTTCTTGAAGGATTCTCCCCCATTCTTTTGAAAGAAATGGCTGGATCGGACGAGAACAATCCGGGAGTGATCGGACGGGCGAATCTCCACGGGGATTTACGAGGTGGTGGTGGCAAATTTGCGGTGGGGGTGGGTCAAAATCGCAGAGCTTTGAGCACCATTAATAGCAATGTTGCCGCAGCTCCTCCCCCTCATCCCTGCGCAGTCCTCAAAAGAGGCCTAACAGAAACTAATGCTGTTCCCAACAACAAAGACCCGTCGCTTCTGGTTCATCGACCGATCACTCGGAAGTTTGCTGCTCAGCTGGCTAATAAGCAGCAACAGCAACTTGTTGTACCCGAGGTGGATACCAAGCCAATGCAATCTGCCCCAATTCGAAACGACTCTGAACTTCATCATCCCATCGCTGAGGAAGATGATGCCATGGGGGAATCAGCAGTGCCAATGTTCGTTCAACACACTGAAGCAATGTTGGACGAAATTGACAGGATGGATGAGGTGGAAATGGAAGATATAGAAGAAGAGGCAGTCATTGACATTGACAGCCGCGATACGAAGGACCCACTAGCTGTCGTGGAGTACATTGATGAATTGTATGCCTACTACAGGAAAGCCGAGGTTTCAAGCTGTGTCCCATCGGACTACATGACTCAACAAGCAGATATCAATGAGAGGATGAGAGGGATTCTCATTGACTGGCTAATTGAGGTACACTACAAATTTGAGCTGATGGAGGAGACGTTGTATCTAACAGTCAACCTGATCGATAGATTCTTGGCGGTTCAGTCGGTGGTGAGGAAGAAGCTCCAGCTTGTTGGAGTGACGGCCATGCTTATTGCCTGCAAGTATGAAGAAGTTTCTGTTCCTGTTGTGGATGATCTTATTCTCATATCCGACAAGGCCTACACCAGAAAGGAAGTTCTGGACATGGAGAAGTTGATGATTAATACCTTACAGTTCAATTTGTCTGTCCCAACACCTTATGTCTTCATGAGGAGGTTTCTCAAAGCTGCTCAATCTGACAATGAGCTGGACCTTCTCTCATACTTCATGGTAGAACTGTGTCTGGTGGAATATGAAATGCTGAAGTTCAAGCCTTCATTAATGGCTGCTGCTGCTGTCTTCACTGCTCAATGCACCATCAATGGCTTCAAGGAATGGAGCAAAACCAGCGAGTGGCACACTGGGTATCCGCAGGAGCAGCTTCTGGAATGTTCACGTCTGATGGTGGAGTTCCATAAGAAAGCAGGGACAGGGAAATTGACAGGAGTTCACAGGAAATATTGCACATCCAAGTTTGGATATGCTGCAAGAAGTGAGCCAGCAAGCTTTCTGTTGGAATAA 1530 47.12 REIAPAFNGGFSKSSLSRLFESGSAGRHPVATVTRLIISLKRNSRVLDFRRLVFIHDLGIASLLEGFSPILLKEMAGSDENNPGVIGRANLHGDLRGGGGKFAVGVGQNRRALSTINSNVAAAPPPHPCAVLKRGLTETNAVPNNKDPSLLVHRPITRKFAAQLANKQQQQLVVPEVDTKPMQSAPIRNDSELHHPIAEEDDAMGESAVPMFVQHTEAMLDEIDRMDEVEMEDIEEEAVIDIDSRDTKDPLAVVEYIDELYAYYRKAEVSSCVPSDYMTQQADINERMRGILIDWLIEVHYKFELMEETLYLTVNLIDRFLAVQSVVRKKLQLVGVTAMLIACKYEEVSVPVVDDLILISDKAYTRKEVLDMEKLMINTLQFNLSVPTPYVFMRRFLKAAQSDNELDLLSYFMVELCLVEYEMLKFKPSLMAAAAVFTAQCTINGFKEWSKTSEWHTGYPQEQLLECSRLMVEFHKKAGTGKLTGVHRKYCTSKFGYAARSEPASFLLE 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 387350 390615 + MC11g0053 Mch11g0059 678993
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0059 509 Pfam Cyclin, N-terminal domain 260 385 IPR006671 -
Mch11g0059 509 Gene3D - 260 498 - -
Mch11g0059 509 FunFam G2/mitotic-specific cyclin-1 363 499 - -
Mch11g0059 509 SUPERFAMILY Cyclin-like 386 504 IPR036915 -
Mch11g0059 509 CDD CYCLIN_AtCycB-like_rpt1 238 382 - -
Mch11g0059 509 Gene3D - 273 385 - -
Mch11g0059 509 PANTHER CYCLINS 235 491 IPR039361 GO:0000079(PANTHER)|GO:0000307(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0016538(PANTHER)|GO:0044772(PANTHER)
Mch11g0059 509 SMART Cyclin_C_2 387 504 IPR004367 -
Mch11g0059 509 SMART cyclin_7 391 473 IPR013763 -
Mch11g0059 509 SMART cyclin_7 294 378 IPR013763 -
Mch11g0059 509 CDD CYCLIN_AtCycB-like_rpt2 387 503 - -
Mch11g0059 509 ProSitePatterns Cyclins signature. 289 320 IPR048258 -
Mch11g0059 509 Pfam Cyclin, C-terminal domain 387 503 IPR004367 -
Mch11g0059 509 SUPERFAMILY Cyclin-like 248 384 IPR036915 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0059 Mch-Chr11:387350 Mch11g0583 Mch-Chr11:3718821 2.74E-52 dispersed
Mch1g0470 Mch-Chr1:9148953 Mch11g0059 Mch-Chr11:387350 2.19E-81 transposed
Mch2g0203 Mch-Chr2:1533033 Mch11g0059 Mch-Chr11:387350 2.03E-79 transposed
Mch4g0020 Mch-Chr4:140663 Mch11g0059 Mch-Chr11:387350 3.30E-66 transposed
Mch1g1647 Mch-Chr1:17393279 Mch11g0059 Mch-Chr11:387350 4.27E-156 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0059 K21777 - csv:101223199 700.664