Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0072 ATGGCAGACCATTCAAATGAAGGTTCCAGCACCAGCAGTATTTCTGGGGAGACTGCAACTTCGGTTATTGAGCTAAACATCAAGACTTTGGATTCACATATCTACAGTTTTCAAGTGAATAAAGATATGCCAGTTCAATTATTCAAGGAGAAAATTGCGAATGAAATAGGAATACCAGTGAATCAGCAACGTTTGATATTCAGGGGAAAGGTCTTAAAGGATGAACATCCGCTTTCCGAGTATCATTTGGAAAATGGACACACGTTGCATTTAGTTGAAAGACAACCAGCTCAGCAACAGGCAGCATCCGATACAAGCATGGGTGACAGAACTGCGAATGTGCCTTCATCAACTGGTAACGAAGCTGGAGCGGGTGCCCCTCGAAATCGTGTTGGACAAATTGCACATAGTGTCGTTTTAGGAACATTTAATGTTGGTGATCAAGGTGAAGGCCTTGTTCCTGATCTTTCTCGGGTTATTGGGGCAGTTCTGAATTCTATTGGAATAAGCAGCCAAAACACAAATGTTGCAAGTGGGATGCAGTCTACCTTGCCAAACAATCGTGGCACAGCAAGTCAAGGAAATGAAACATTTAGAGTTAATGTTGGGGCTGGAGGACAAGCAACAAGTCAGGCACAAACTGGACAGGCATTTCCCAGCCAGCCATCACAAAGTTTTCCTCACGTGATTCAAATTCCACTTGCCAGTGCAGCTGTTTCAGTTCCTTCCATCCATGCGCCCATTCCCGATTCTCTGACAACAATTTCCGAGTTCATGAACCGTGTCGAGCATGCAATATCTCAAAATGGGGGAGATCTACCTAGGGTGGAACTGCCTACCAATCCCCAAGGCTTGCCAACCCCTGAATCTTTGAGCATTGTCTTGCGACATGCTCATCGGCTTCTAAGTGATTATGCCACATCTTCACTATCTCGTATTGCGGAGTGTTTGGAGCAAAATGGCTCCTCCACTGATCCCACCGTGAGGGGTCAAATCCAGGAAGAGTCGGTACAAGTAGGACTTAGGACACAACAAATGGGAGCGCTTCTTCTGGAACTTGGTCGTACAATCTTGACACTCCGTATGGGACAATCATCTGCTTCGTCAGTTGTTAATGCTGGGCCAGCAGTTTATATCTCTCCTATGGGGCCAAATCCCATAATGGTTCAGCCTTTTCCCCTGCAAACTAATCCCCTCTTGGGTGGTTCTGTACTATCATCAAATCCAGTGTCTGTTGGTGCAGTTGGTATTGGAACTGCCCCTAGGCACATCAACATTCATATACATGCTGTTGGTACCAGGTCGAACAATGGGGATGGAGAACCTGCAGAGCGCCACAGTGTCAGTGGCTCTACTGATTCAGGTGTATCACAGGCACCTCCTATGAGAAGTGTTATTGAGACTGCCATTCCACATCCTTTGGGTGTTTCAATTTCTGCTGCTGTGCAACCTGGTGAAGGTGTTTCCTTTTCCGAGCCTCCTCCCGACTCTGTTTCACTATCCTCCCTTGTGGCTGATGTCAATTCACGAATTAGAGAATTAGTTGCTAATGTTGGAGGTGGTACCAATACTGAATCAGGTCTAGGGCAAACGGCAGTTCAGAATTCATATGTTGGTTCTGGAGCAGGGAGTGAGACAAGGGACATGGCTGGAGAGTCGAGTGAGTCATTACCTGGGCATAACCCTGAAAGTGGAAGTGAGAAGATTGTAAACACAGACAATATTTGTCGAGATACAGGAAGGGCTGTAAACTCAACTGATTTACCGACATGCTCTGGTGGTAGGGGCTCTGAGGGTGTTGAAAGTAATGGAGAAAATTTTCAAAGTCAGGCATCTTGTGAGAAGAGCATGGGAGCTGGGTCTGCCCAAGCTGTTCCACTTGGACTTGGAATGGGAGGTCTGGAACGTCGGAGGCGAGGCAGACAGCAAAGTCCACAGGTTAAGGGGGGTGACGGAGGAACCAGCCAGGGTCCTGCAGGCCAGCCGTTCTTACAATCTCTTGCGTCTAGTGCTTCTATGAATACGTCTAATGCTCATGAGCCCTCTTCAGCCCTAGGATCGACTGTTGGCCCAACTGTGGATAGCAGATCCTTGCATGGGCTAGGTTCTGACGGCCAAATTGATCTAGCAAGCAGTATGTCTCAGGTTTTGCAGAACCCTGCTTTGAATGGACTATTGACAGGCCTTTCAGAGCAAACTGGAGTTGGCTCTCCAGATGTCTTGAGGAATATGTTGCAACAGCTAACGCAAAGCCCTCAGATGAGAAATACAGTCAATCAAATTGCTCAACAGGTCGACACTCGAGATCTTGAACACATGTTTTCTGGGTCAAGAAGAGGCCAGGGTGGTGGTCTCCATTTGTCGAGGATGTTCCAACAGATGATGCCAGTCGTTTCTCAAGTGCTTGGAGGAGGGCTAAGTCAACCACCGTCCTCAAATGTGGAAAGAGAGCCAATGCAACCACCCTCCTCAAACGTGGAAAGAGAGCCAAGGCCTCACAGTGCGAGGTCTGGTAGTGGAGTGGATACACCTAATGACCAAAATTTTCAGATTGGGATCGAAGATCTGGCTGGAAGGATTATATCTACCAATTCTCCTAGGGATGTCTTCCGTGCTGTGGTAGAGAGTTCAGCTCGGCTTTCTGGCAGTAGCAGTAGCGAAGATATCACAAACGAGTTGTGCAGCAACGAGAGACTTGCTAAGGAATATGTAGAGATGTTATCAAGTGATGTGAACCGACGGCTACAGGGCAATTCAGAACAGGAGAAATAA 2772 47.22 MADHSNEGSSTSSISGETATSVIELNIKTLDSHIYSFQVNKDMPVQLFKEKIANEIGIPVNQQRLIFRGKVLKDEHPLSEYHLENGHTLHLVERQPAQQQAASDTSMGDRTANVPSSTGNEAGAGAPRNRVGQIAHSVVLGTFNVGDQGEGLVPDLSRVIGAVLNSIGISSQNTNVASGMQSTLPNNRGTASQGNETFRVNVGAGGQATSQAQTGQAFPSQPSQSFPHVIQIPLASAAVSVPSIHAPIPDSLTTISEFMNRVEHAISQNGGDLPRVELPTNPQGLPTPESLSIVLRHAHRLLSDYATSSLSRIAECLEQNGSSTDPTVRGQIQEESVQVGLRTQQMGALLLELGRTILTLRMGQSSASSVVNAGPAVYISPMGPNPIMVQPFPLQTNPLLGGSVLSSNPVSVGAVGIGTAPRHINIHIHAVGTRSNNGDGEPAERHSVSGSTDSGVSQAPPMRSVIETAIPHPLGVSISAAVQPGEGVSFSEPPPDSVSLSSLVADVNSRIRELVANVGGGTNTESGLGQTAVQNSYVGSGAGSETRDMAGESSESLPGHNPESGSEKIVNTDNICRDTGRAVNSTDLPTCSGGRGSEGVESNGENFQSQASCEKSMGAGSAQAVPLGLGMGGLERRRRGRQQSPQVKGGDGGTSQGPAGQPFLQSLASSASMNTSNAHEPSSALGSTVGPTVDSRSLHGLGSDGQIDLASSMSQVLQNPALNGLLTGLSEQTGVGSPDVLRNMLQQLTQSPQMRNTVNQIAQQVDTRDLEHMFSGSRRGQGGGLHLSRMFQQMMPVVSQVLGGGLSQPPSSNVEREPMQPPSSNVEREPRPHSARSGSGVDTPNDQNFQIGIEDLAGRIISTNSPRDVFRAVVESSARLSGSSSSEDITNELCSNERLAKEYVEMLSSDVNRRLQGNSEQEK 923
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 456475 466388 + MC11g0066 Mch11g0072 679006

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0072 923 MobiDBLite consensus disorder prediction 801 848 - -
Mch11g0072 923 Gene3D - 13 108 - -
Mch11g0072 923 PANTHER LARGE PROLINE-RICH PROTEIN BAG6 2 918 - GO:0030433(PANTHER)|GO:0031593(PANTHER)|GO:0051787(PANTHER)|GO:0071818(PANTHER)
Mch11g0072 923 Pfam Ubiquitin family 25 95 IPR000626 GO:0005515(InterPro)
Mch11g0072 923 MobiDBLite consensus disorder prediction 658 694 - -
Mch11g0072 923 PRINTS Ubiquitin signature 54 74 IPR019956 -
Mch11g0072 923 PRINTS Ubiquitin signature 75 96 IPR019956 -
Mch11g0072 923 MobiDBLite consensus disorder prediction 95 127 - -
Mch11g0072 923 FunFam Large proline-rich protein BAG6 15 108 - -
Mch11g0072 923 SMART ubq_7 23 94 IPR000626 GO:0005515(InterPro)
Mch11g0072 923 MobiDBLite consensus disorder prediction 432 459 - -
Mch11g0072 923 MobiDBLite consensus disorder prediction 535 617 - -
Mch11g0072 923 MobiDBLite consensus disorder prediction 535 619 - -
Mch11g0072 923 MobiDBLite consensus disorder prediction 804 820 - -
Mch11g0072 923 MobiDBLite consensus disorder prediction 637 700 - -
Mch11g0072 923 SUPERFAMILY Ubiquitin-like 21 96 IPR029071 -
Mch11g0072 923 MobiDBLite consensus disorder prediction 95 123 - -
Mch11g0072 923 ProSiteProfiles Ubiquitin domain profile. 23 98 IPR000626 GO:0005515(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0072 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g1812 Mch-Chr10:17776644 Mch11g0072 Mch-Chr11:456475 1.43E-08 dispersed
Mch11g0072 Mch-Chr11:456475 Mch11g0073 Mch-Chr11:468018 2.92E-47 tandem
Mch8g3001 Mch-Chr8:32622504 Mch11g0072 Mch-Chr11:456475 2.64E-62 transposed
Mch11g0072 Mch-Chr11:456475 Mch4g0408 Mch-Chr4:2611183 3.35E-08 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g547 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed01g2452 . . . . . . . . Bhi09g02931 Tan01g5081 Cmetu07g1738 . . Mch11g0072 . . . . . . . . . . . Cme07g00072
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007185 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 0 36