Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0083 ATGTCACCGCCGGCGAGGAGCAAGAGCTGGAACGCCGGCCAAGACAAGCATTATCCGCGGGCGCTGGCCACTCACGACGAAGTTATCTCCGACCCCATTGTTTTTTGGGACACTTTGAGACGCTTCCATTTTATGATGAACACAAAGTTCATGATTCCTGTGATTGGAGGGAAGGAGCTAGATTTGCATGTTCTATATTCAGAGGTTACCAGAAGAGGCGGCCATGAAAAGGTTGTCGCAGAGAAGAAATGGAGGGAAGTGGGAAGTGTTTTCAAGTTCTCTCCGACGACGACGAGTGCCTCATTTGTGTTGAGAAAGCATTATCTAAGTCTTCTTTACCATTACGAGCAAGTTTACTTGTTTAGCCGGCAAGGCCCCATCTGTGTTCCTCAAGCGCCATTTTCTTTTGGTAGCCCTTCCAGTGAAAACGAATTGGCTCTGGTGGAATATACCCCCAAAACCACGTCGTTTTCCCCTGGTCCGCCTGCTGAAGTTACTGGAACAATTGATGGGAAATTCGACTGTGGTTACCTGGTGACTGTGAAATTGGGATCTGAAGTTCTGAGAGGAGTACTTTACCATCCGGAGCAGCCCTCCCCATCCAATCTACGACCCCAATCAATCAATGCCATTGTACCATACACCGGTGGCAGGCTTCGACACTCCGGTCGACGGCATCGGAGGAGCCGGAGAAAGGGAGACCCGAACCACCCGAAACCGAACCGAAGTGGGTACAATTTCTTCTTTGCAGAGAAGCATTACAAGCTGAAATCTCTGTACCCAAATAGAGAGAGGGAGTTCACCAAGATGATTGGAGAGTCTTGGAATAACCTCAGCCCTGAAGAGAGGACGGTTTATCAGAACATTGGGCTGAAAGACAAGGAAAGATACAAGAGAGAGTTGAAAGAGTACAAGGAGAAAATGAGGCAGGCAACTGATATTCATGAACCTAACTATTCAAAACATGGAGAGTGA 975 48.1 MSPPARSKSWNAGQDKHYPRALATHDEVISDPIVFWDTLRRFHFMMNTKFMIPVIGGKELDLHVLYSEVTRRGGHEKVVAEKKWREVGSVFKFSPTTTSASFVLRKHYLSLLYHYEQVYLFSRQGPICVPQAPFSFGSPSSENELALVEYTPKTTSFSPGPPAEVTGTIDGKFDCGYLVTVKLGSEVLRGVLYHPEQPSPSNLRPQSINAIVPYTGGRLRHSGRRHRRSRRKGDPNHPKPNRSGYNFFFAEKHYKLKSLYPNREREFTKMIGESWNNLSPEERTVYQNIGLKDKERYKRELKEYKEKMRQATDIHEPNYSKHGE 324
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 538856 540966 + MC11g0075 Mch11g0083 679017

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0083 324 CDD ARID_HMGB9-like 31 116 IPR045303 GO:0003677(InterPro)
Mch11g0083 324 Pfam ARID/BRIGHT DNA binding domain 35 116 IPR001606 GO:0003677(InterPro)
Mch11g0083 324 SMART hmgende2 237 306 IPR009071 -
Mch11g0083 324 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 238 305 IPR009071 -
Mch11g0083 324 Coils Coil 294 314 - -
Mch11g0083 324 Pfam HMG (high mobility group) box 238 305 IPR009071 -
Mch11g0083 324 SUPERFAMILY HMG-box 235 309 IPR036910 -
Mch11g0083 324 SMART bright_3 30 121 IPR001606 GO:0003677(InterPro)
Mch11g0083 324 CDD HMG-box_AtHMGB9-like 238 304 - -
Mch11g0083 324 SMART ARID_2 26 116 - -
Mch11g0083 324 MobiDBLite consensus disorder prediction 215 244 - -
Mch11g0083 324 Gene3D High mobility group box domain 222 317 IPR036910 -
Mch11g0083 324 Gene3D - 20 126 IPR036431 GO:0003677(InterPro)
Mch11g0083 324 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 11 316 - -
Mch11g0083 324 MobiDBLite consensus disorder prediction 219 235 - -
Mch11g0083 324 ProSiteProfiles ARID domain profile. 29 120 IPR001606 GO:0003677(InterPro)
Mch11g0083 324 SUPERFAMILY ARID-like 25 127 IPR036431 GO:0003677(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0083 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0083 Mch-Chr11:538856 Mch7g0866 Mch-Chr7:13202443 3.75E-88 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g149 Blo01g01615 . . . Bpe02g00331 . . Bma01g02389 . . Cma01g01993 Cma09g00079 Car01g01565 . . Cpe06g00043 . . . . . . . . . . . . . . . . Cone7ag1916 Cone17ag1432 Cone20ag0052 Lsi04g01784 Csa04g02674 . . . . . . . . . . Sed01g2459 Cmo01g02054 Cmo09g00078 . . . Car09g00069 . Cpe02g00052 Bhi09g02941 Tan01g5063 Cmetu07g1207 . Hepe01g2311 Mch11g0083 . Cla05g01592 Cam05g1700 Cec05g1699 Cco05g1750 Clacu05g1687 Cmu05g1576 Cre05g1693 . . Chy07g00366 Cme07g00083
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch7g0866 . 115 457 ARID Transcription Factor Family AT1G04880 60.7 1.3e-109 393.7
Mch10g1836 . 200 479 ARID Transcription Factor Family AT1G20910 60.1 3.0e-91 332.4
Mch11g0083 . 16 309 ARID Transcription Factor Family AT1G76110 67.9 3.5e-112 401.7
Mch10g1836 . 188 509 ARID Transcription Factor Family AT1G76510 60.8 7.1e-110 394.4
Mch8g1003 . 2 781 ARID Transcription Factor Family AT3G43240 58.0 7.1e-259 890.2
Mch9g0178 . 2 771 ARID Transcription Factor Family AT3G43240 57.9 1.2e-258 889.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006578 1 1 1 1 2 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42539 PF01388 ARID 3.00E-18 CL0123 Mch TR