Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0085 ATGGCCCCAAGGGAAGATGTGCTCCTCAAGATCGACAGTTTCGGAAATGGAGCTGACAAGGAATCAGAGGAGAAGAATTTCCAGTGTTTACCAGAGAGATCCGCACAAACCATGAGACGAAGAGGTAAAGAGTCTTCCGACTCGGAAAATCGCCGCCCCTCGTCGGCCTCCGGCGGCGGAGAGGTGCTTCGTTGCAGTTCCAACGCTTCATTTCGCGGATGTTCGTGGAGCTCTCCAATCAGCAAGAAGTCTCGGCTGATGGACCCGCCTGAGGAGGATTCTTCTCAAAAATTGGAAACCGCCGTGAGCGAAGAAGGTAAAAATCAGGACGAAACCGAGGACATGCCTGAAGAATACAATCAGCTGAAGCTAAGCCCCTTCTCCGTTCTTCAGTGGGTGATTTTTGTTATCGTTATTGTGGGTTTGATTTGTAATCGCTGGGTTCCAATCTTGAAGAGGAAGTCGATTTGGGATCTTCCGTTATGGAAATGGGAGTTGACTGTTCTAGCCCTCATATGCGGACGGTTGATTTCGACTTGGGCCGTCGGATTGATAGTGAAAATCATCGAGAGGAATTTTCTATTGAGGAAACGGGTTCTGTATTTCGTTTATGGGTTAAGGAGGGCTGTACGAAATTGCCTCTGGCTCTCTCTGCTTTTGCTTGTTTGGCATTTCATATTCAACGAAAAGGTCCAGAGAACGACGCGGAGTAAGATTTTACCATATATTACCAAGATTTTGATCTGTTTTCTCGTGGGTGCTTCGATTTGGCTTCTGAAAACGCTAGCCGTTAAGATTCTGGCCTCCTTTTTCCACGTTAATAACTACTTCGAAAGGCTTAAGGAGGCTTTGTTCAGCCAGTATGTGATTGTGACTCTCTCCGGCTCGCCATTGTTCGAGAGGTCCAACACTGAAGATATGGTGAAGGATAATCAGAATGCCGATGGAAGGGAAGAAAGTCCCAAAAGTGGGAGAATTATATGCAGTGGGAGACTTGTAAATTGCGATGGCTCGAGACAATTGAAGCCGGAATCAAGCAGACAAGATGAGGAAATCCCAGTTGATCAGTTGAACAAACTGAACCAGCATAACATATCAGCTTGGAATATGAGGAGAATGATGAATATTGTAAGAAATGGAGCTTTGTTAACTCTTGATGAGAAGATACTATCAGAAACGAAAGAAGAGTATTTGTTGCAGATTAGGAGTGAGCGGCAGGCGAAAGAGGCAGCTGGGAATATTTTCCGGCGAGTATCCAGACGTGGGTCAGAATTTATTAATCTGGATGATGTGATGCGGTTTATGAATAAAGAGGAAGCTCTAATGACCATGAGTTTATTTGGACCAGATGCTGAAACTCAGTGCATTGACGAATTCTCTTTTAGAGAGTGGATGGTAAATGCATTTAACCAGAGAAAAGTTCTTGTACTATCTCTCAATGATGCAAATACGGCCGTTGATGGTCTTCACAACTTGCTAAACATCTTTGTAGCTGTAACAATTTTGGTAATCTGGCTTATCATATTAGGAACTCCCATCCTGCACTTCCTCATCTTCATAAGCTCACAGCTTCTTCTGCTGGTTTTTATTTTTGGCAACACATGTAAGACGGTCTTTGAAGCTATCATTTTCTTGTTTGTGATGCACCCATTCGATGTCGGCGACCGCTGCGAAGTGGACGGTGTCCAGATGGTTGTTGAAGAGATGAGGATATTAACTACAGTTTTCCTGAGATATGATAACCAGAAGATTACTTACCCCAACAGTGTGCTGGCTACCAAGGCCATTGGCAATTACTACCGCAGTCCAGACATGGGAGAGGGAGTTGATTTCTATGTCCATATTTCAACTCCATCGAAGAAAGTCTCCCTTATTAAAGAACAGATTACAAGGTACATAGAGAGCAAGAGCGAGGAATGGCACCCAGCTCCGGTGGTTACGATGAAAGATGTTGAAGATCTGGAGAAGGTGAAGATGTCGGTTTGTGTTACACACAAAATGAACCACCAAGACATGGGAGAGAGATGGAACAGAAGAGCTGCGTTGGTCGAAGAGATTGTCAAAATTTTCAGACAACTCGACGATGAACATCAGGAGAATGTTCAAAACTTGGCTTCTGGAGCCACCTGA 2130 44.46 MAPREDVLLKIDSFGNGADKESEEKNFQCLPERSAQTMRRRGKESSDSENRRPSSASGGGEVLRCSSNASFRGCSWSSPISKKSRLMDPPEEDSSQKLETAVSEEGKNQDETEDMPEEYNQLKLSPFSVLQWVIFVIVIVGLICNRWVPILKRKSIWDLPLWKWELTVLALICGRLISTWAVGLIVKIIERNFLLRKRVLYFVYGLRRAVRNCLWLSLLLLVWHFIFNEKVQRTTRSKILPYITKILICFLVGASIWLLKTLAVKILASFFHVNNYFERLKEALFSQYVIVTLSGSPLFERSNTEDMVKDNQNADGREESPKSGRIICSGRLVNCDGSRQLKPESSRQDEEIPVDQLNKLNQHNISAWNMRRMMNIVRNGALLTLDEKILSETKEEYLLQIRSERQAKEAAGNIFRRVSRRGSEFINLDDVMRFMNKEEALMTMSLFGPDAETQCIDEFSFREWMVNAFNQRKVLVLSLNDANTAVDGLHNLLNIFVAVTILVIWLIILGTPILHFLIFISSQLLLLVFIFGNTCKTVFEAIIFLFVMHPFDVGDRCEVDGVQMVVEEMRILTTVFLRYDNQKITYPNSVLATKAIGNYYRSPDMGEGVDFYVHISTPSKKVSLIKEQITRYIESKSEEWHPAPVVTMKDVEDLEKVKMSVCVTHKMNHQDMGERWNRRAALVEEIVKIFRQLDDEHQENVQNLASGAT 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 543000 547136 - MC11g0077 Mch11g0085 679019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0085 709 MobiDBLite consensus disorder prediction 51 82 - -
Mch11g0085 709 PIRSF Memb_At2g17000 12 706 IPR016688 -
Mch11g0085 709 SUPERFAMILY Sm-like ribonucleoproteins 540 599 IPR010920 -
Mch11g0085 709 Gene3D - 550 599 IPR023408 -
Mch11g0085 709 MobiDBLite consensus disorder prediction 85 115 - -
Mch11g0085 709 Pfam Mechanosensitive ion channel, beta-domain 543 600 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Mch11g0085 709 MobiDBLite consensus disorder prediction 304 323 - -
Mch11g0085 709 MobiDBLite consensus disorder prediction 36 50 - -
Mch11g0085 709 MobiDBLite consensus disorder prediction 1 115 - -
Mch11g0085 709 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 41 701 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
Mch11g0085 709 FunFam Predicted mechanosensitive ion channel 550 599 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0085 Mch-Chr11:543000 Mch4g0458 Mch-Chr4:2930402 1.11E-205 dispersed
Mch11g0085 Mch-Chr11:543000 Mch2g0398 Mch-Chr2:2916034 1.05E-231 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0085 K22048 - mdm:103410417 766.148