Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0085 ATGGCCCCAAGGGAAGATGTGCTCCTCAAGATCGACAGTTTCGGAAATGGAGCTGACAAGGAATCAGAGGAGAAGAATTTCCAGTGTTTACCAGAGAGATCCGCACAAACCATGAGACGAAGAGGTAAAGAGTCTTCCGACTCGGAAAATCGCCGCCCCTCGTCGGCCTCCGGCGGCGGAGAGGTGCTTCGTTGCAGTTCCAACGCTTCATTTCGCGGATGTTCGTGGAGCTCTCCAATCAGCAAGAAGTCTCGGCTGATGGACCCGCCTGAGGAGGATTCTTCTCAAAAATTGGAAACCGCCGTGAGCGAAGAAGGTAAAAATCAGGACGAAACCGAGGACATGCCTGAAGAATACAATCAGCTGAAGCTAAGCCCCTTCTCCGTTCTTCAGTGGGTGATTTTTGTTATCGTTATTGTGGGTTTGATTTGTAATCGCTGGGTTCCAATCTTGAAGAGGAAGTCGATTTGGGATCTTCCGTTATGGAAATGGGAGTTGACTGTTCTAGCCCTCATATGCGGACGGTTGATTTCGACTTGGGCCGTCGGATTGATAGTGAAAATCATCGAGAGGAATTTTCTATTGAGGAAACGGGTTCTGTATTTCGTTTATGGGTTAAGGAGGGCTGTACGAAATTGCCTCTGGCTCTCTCTGCTTTTGCTTGTTTGGCATTTCATATTCAACGAAAAGGTCCAGAGAACGACGCGGAGTAAGATTTTACCATATATTACCAAGATTTTGATCTGTTTTCTCGTGGGTGCTTCGATTTGGCTTCTGAAAACGCTAGCCGTTAAGATTCTGGCCTCCTTTTTCCACGTTAATAACTACTTCGAAAGGCTTAAGGAGGCTTTGTTCAGCCAGTATGTGATTGTGACTCTCTCCGGCTCGCCATTGTTCGAGAGGTCCAACACTGAAGATATGGTGAAGGATAATCAGAATGCCGATGGAAGGGAAGAAAGTCCCAAAAGTGGGAGAATTATATGCAGTGGGAGACTTGTAAATTGCGATGGCTCGAGACAATTGAAGCCGGAATCAAGCAGACAAGATGAGGAAATCCCAGTTGATCAGTTGAACAAACTGAACCAGCATAACATATCAGCTTGGAATATGAGGAGAATGATGAATATTGTAAGAAATGGAGCTTTGTTAACTCTTGATGAGAAGATACTATCAGAAACGAAAGAAGAGTATTTGTTGCAGATTAGGAGTGAGCGGCAGGCGAAAGAGGCAGCTGGGAATATTTTCCGGCGAGTATCCAGACGTGGGTCAGAATTTATTAATCTGGATGATGTGATGCGGTTTATGAATAAAGAGGAAGCTCTAATGACCATGAGTTTATTTGGACCAGATGCTGAAACTCAGTGCATTGACGAATTCTCTTTTAGAGAGTGGATGGTAAATGCATTTAACCAGAGAAAAGTTCTTGTACTATCTCTCAATGATGCAAATACGGCCGTTGATGGTCTTCACAACTTGCTAAACATCTTTGTAGCTGTAACAATTTTGGTAATCTGGCTTATCATATTAGGAACTCCCATCCTGCACTTCCTCATCTTCATAAGCTCACAGCTTCTTCTGCTGGTTTTTATTTTTGGCAACACATGTAAGACGGTCTTTGAAGCTATCATTTTCTTGTTTGTGATGCACCCATTCGATGTCGGCGACCGCTGCGAAGTGGACGGTGTCCAGATGGTTGTTGAAGAGATGAGGATATTAACTACAGTTTTCCTGAGATATGATAACCAGAAGATTACTTACCCCAACAGTGTGCTGGCTACCAAGGCCATTGGCAATTACTACCGCAGTCCAGACATGGGAGAGGGAGTTGATTTCTATGTCCATATTTCAACTCCATCGAAGAAAGTCTCCCTTATTAAAGAACAGATTACAAGGTACATAGAGAGCAAGAGCGAGGAATGGCACCCAGCTCCGGTGGTTACGATGAAAGATGTTGAAGATCTGGAGAAGGTGAAGATGTCGGTTTGTGTTACACACAAAATGAACCACCAAGACATGGGAGAGAGATGGAACAGAAGAGCTGCGTTGGTCGAAGAGATTGTCAAAATTTTCAGACAACTCGACGATGAACATCAGGAGAATGTTCAAAACTTGGCTTCTGGAGCCACCTGA 2130 44.46 MAPREDVLLKIDSFGNGADKESEEKNFQCLPERSAQTMRRRGKESSDSENRRPSSASGGGEVLRCSSNASFRGCSWSSPISKKSRLMDPPEEDSSQKLETAVSEEGKNQDETEDMPEEYNQLKLSPFSVLQWVIFVIVIVGLICNRWVPILKRKSIWDLPLWKWELTVLALICGRLISTWAVGLIVKIIERNFLLRKRVLYFVYGLRRAVRNCLWLSLLLLVWHFIFNEKVQRTTRSKILPYITKILICFLVGASIWLLKTLAVKILASFFHVNNYFERLKEALFSQYVIVTLSGSPLFERSNTEDMVKDNQNADGREESPKSGRIICSGRLVNCDGSRQLKPESSRQDEEIPVDQLNKLNQHNISAWNMRRMMNIVRNGALLTLDEKILSETKEEYLLQIRSERQAKEAAGNIFRRVSRRGSEFINLDDVMRFMNKEEALMTMSLFGPDAETQCIDEFSFREWMVNAFNQRKVLVLSLNDANTAVDGLHNLLNIFVAVTILVIWLIILGTPILHFLIFISSQLLLLVFIFGNTCKTVFEAIIFLFVMHPFDVGDRCEVDGVQMVVEEMRILTTVFLRYDNQKITYPNSVLATKAIGNYYRSPDMGEGVDFYVHISTPSKKVSLIKEQITRYIESKSEEWHPAPVVTMKDVEDLEKVKMSVCVTHKMNHQDMGERWNRRAALVEEIVKIFRQLDDEHQENVQNLASGAT 709
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 543000 547136 - MC11g0077 Mch11g0085 679019

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0085 709 MobiDBLite consensus disorder prediction 51 82 - -
Mch11g0085 709 PIRSF Memb_At2g17000 12 706 IPR016688 -
Mch11g0085 709 SUPERFAMILY Sm-like ribonucleoproteins 540 599 IPR010920 -
Mch11g0085 709 Gene3D - 550 599 IPR023408 -
Mch11g0085 709 MobiDBLite consensus disorder prediction 85 115 - -
Mch11g0085 709 Pfam Mechanosensitive ion channel, beta-domain 543 600 IPR006685 GO:0016020(InterPro)|GO:0055085(InterPro)
Mch11g0085 709 MobiDBLite consensus disorder prediction 304 323 - -
Mch11g0085 709 MobiDBLite consensus disorder prediction 36 50 - -
Mch11g0085 709 MobiDBLite consensus disorder prediction 1 115 - -
Mch11g0085 709 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 41 701 IPR016688 GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER)
Mch11g0085 709 FunFam Predicted mechanosensitive ion channel 550 599 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0085 K22048 - - mdm:103410417 766.148
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0085 Mch-Chr11:543000 Mch4g0458 Mch-Chr4:2930402 1.11E-205 dispersed
Mch11g0085 Mch-Chr11:543000 Mch2g0398 Mch-Chr2:2916034 1.05E-231 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Mch5g0406 . 154 520 Mechanosensitive Ion Channel Family AT4G00290 65.0 3.3e-143 505.4
Mch8g0272 . 11 702 Mechanosensitive Ion Channel Family AT5G10490 57.3 9.7e-199 690.3
Mch10g0606 . 64 764 Mechanosensitive Ion Channel Family AT5G10490 55.1 1.0e-192 670.2
Mch8g0272 . 11 682 Mechanosensitive Ion Channel Family AT1G58200 57.5 8.6e-195 677.2
Mch10g0606 . 49 731 Mechanosensitive Ion Channel Family AT1G58200 50.7 1.1e-170 597.0
Mch2g0398 . 50 942 Mechanosensitive Ion Channel Family AT1G53470 56.0 4.6e-265 911.0
Mch4g0458 . 83 948 Mechanosensitive Ion Channel Family AT1G53470 50.7 3.5e-233 805.1
Mch2g0398 . 50 937 Mechanosensitive Ion Channel Family AT3G14810 53.7 1.5e-249 859.4
Mch2g0398 . 50 942 Mechanosensitive Ion Channel Family AT1G78610 60.0 1.9e-284 975.3
Mch4g0458 . 58 946 Mechanosensitive Ion Channel Family AT1G78610 55.9 6.0e-262 900.6
Mch11g0085 . 60 704 Mechanosensitive Ion Channel Family AT1G78610 50.3 1.8e-181 633.3
Mch2g0398 . 227 938 Mechanosensitive Ion Channel Family AT2G17000 61.3 5.0e-237 817.8
Mch4g0458 . 271 949 Mechanosensitive Ion Channel Family AT2G17000 56.9 9.6e-212 733.8
Mch11g0446 . 17 735 Mechanosensitive Ion Channel Family AT5G19520 51.7 3.1e-190 662.1
Mch11g0446 . 67 735 Mechanosensitive Ion Channel Family AT5G12080 58.3 6.4e-204 707.6
Mch6g0955 . 58 749 Mechanosensitive Ion Channel Family AT5G12080 52.3 2.1e-191 666.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0016415 0 0 0 0 0 0 1 0 0 0 0 0 1 0 0 1 0 0 1 0 0 0 0 1 1 0 1 1 0 0 8