Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch11g0085 | ATGGCCCCAAGGGAAGATGTGCTCCTCAAGATCGACAGTTTCGGAAATGGAGCTGACAAGGAATCAGAGGAGAAGAATTTCCAGTGTTTACCAGAGAGATCCGCACAAACCATGAGACGAAGAGGTAAAGAGTCTTCCGACTCGGAAAATCGCCGCCCCTCGTCGGCCTCCGGCGGCGGAGAGGTGCTTCGTTGCAGTTCCAACGCTTCATTTCGCGGATGTTCGTGGAGCTCTCCAATCAGCAAGAAGTCTCGGCTGATGGACCCGCCTGAGGAGGATTCTTCTCAAAAATTGGAAACCGCCGTGAGCGAAGAAGGTAAAAATCAGGACGAAACCGAGGACATGCCTGAAGAATACAATCAGCTGAAGCTAAGCCCCTTCTCCGTTCTTCAGTGGGTGATTTTTGTTATCGTTATTGTGGGTTTGATTTGTAATCGCTGGGTTCCAATCTTGAAGAGGAAGTCGATTTGGGATCTTCCGTTATGGAAATGGGAGTTGACTGTTCTAGCCCTCATATGCGGACGGTTGATTTCGACTTGGGCCGTCGGATTGATAGTGAAAATCATCGAGAGGAATTTTCTATTGAGGAAACGGGTTCTGTATTTCGTTTATGGGTTAAGGAGGGCTGTACGAAATTGCCTCTGGCTCTCTCTGCTTTTGCTTGTTTGGCATTTCATATTCAACGAAAAGGTCCAGAGAACGACGCGGAGTAAGATTTTACCATATATTACCAAGATTTTGATCTGTTTTCTCGTGGGTGCTTCGATTTGGCTTCTGAAAACGCTAGCCGTTAAGATTCTGGCCTCCTTTTTCCACGTTAATAACTACTTCGAAAGGCTTAAGGAGGCTTTGTTCAGCCAGTATGTGATTGTGACTCTCTCCGGCTCGCCATTGTTCGAGAGGTCCAACACTGAAGATATGGTGAAGGATAATCAGAATGCCGATGGAAGGGAAGAAAGTCCCAAAAGTGGGAGAATTATATGCAGTGGGAGACTTGTAAATTGCGATGGCTCGAGACAATTGAAGCCGGAATCAAGCAGACAAGATGAGGAAATCCCAGTTGATCAGTTGAACAAACTGAACCAGCATAACATATCAGCTTGGAATATGAGGAGAATGATGAATATTGTAAGAAATGGAGCTTTGTTAACTCTTGATGAGAAGATACTATCAGAAACGAAAGAAGAGTATTTGTTGCAGATTAGGAGTGAGCGGCAGGCGAAAGAGGCAGCTGGGAATATTTTCCGGCGAGTATCCAGACGTGGGTCAGAATTTATTAATCTGGATGATGTGATGCGGTTTATGAATAAAGAGGAAGCTCTAATGACCATGAGTTTATTTGGACCAGATGCTGAAACTCAGTGCATTGACGAATTCTCTTTTAGAGAGTGGATGGTAAATGCATTTAACCAGAGAAAAGTTCTTGTACTATCTCTCAATGATGCAAATACGGCCGTTGATGGTCTTCACAACTTGCTAAACATCTTTGTAGCTGTAACAATTTTGGTAATCTGGCTTATCATATTAGGAACTCCCATCCTGCACTTCCTCATCTTCATAAGCTCACAGCTTCTTCTGCTGGTTTTTATTTTTGGCAACACATGTAAGACGGTCTTTGAAGCTATCATTTTCTTGTTTGTGATGCACCCATTCGATGTCGGCGACCGCTGCGAAGTGGACGGTGTCCAGATGGTTGTTGAAGAGATGAGGATATTAACTACAGTTTTCCTGAGATATGATAACCAGAAGATTACTTACCCCAACAGTGTGCTGGCTACCAAGGCCATTGGCAATTACTACCGCAGTCCAGACATGGGAGAGGGAGTTGATTTCTATGTCCATATTTCAACTCCATCGAAGAAAGTCTCCCTTATTAAAGAACAGATTACAAGGTACATAGAGAGCAAGAGCGAGGAATGGCACCCAGCTCCGGTGGTTACGATGAAAGATGTTGAAGATCTGGAGAAGGTGAAGATGTCGGTTTGTGTTACACACAAAATGAACCACCAAGACATGGGAGAGAGATGGAACAGAAGAGCTGCGTTGGTCGAAGAGATTGTCAAAATTTTCAGACAACTCGACGATGAACATCAGGAGAATGTTCAAAACTTGGCTTCTGGAGCCACCTGA | 2130 | 44.46 | MAPREDVLLKIDSFGNGADKESEEKNFQCLPERSAQTMRRRGKESSDSENRRPSSASGGGEVLRCSSNASFRGCSWSSPISKKSRLMDPPEEDSSQKLETAVSEEGKNQDETEDMPEEYNQLKLSPFSVLQWVIFVIVIVGLICNRWVPILKRKSIWDLPLWKWELTVLALICGRLISTWAVGLIVKIIERNFLLRKRVLYFVYGLRRAVRNCLWLSLLLLVWHFIFNEKVQRTTRSKILPYITKILICFLVGASIWLLKTLAVKILASFFHVNNYFERLKEALFSQYVIVTLSGSPLFERSNTEDMVKDNQNADGREESPKSGRIICSGRLVNCDGSRQLKPESSRQDEEIPVDQLNKLNQHNISAWNMRRMMNIVRNGALLTLDEKILSETKEEYLLQIRSERQAKEAAGNIFRRVSRRGSEFINLDDVMRFMNKEEALMTMSLFGPDAETQCIDEFSFREWMVNAFNQRKVLVLSLNDANTAVDGLHNLLNIFVAVTILVIWLIILGTPILHFLIFISSQLLLLVFIFGNTCKTVFEAIIFLFVMHPFDVGDRCEVDGVQMVVEEMRILTTVFLRYDNQKITYPNSVLATKAIGNYYRSPDMGEGVDFYVHISTPSKKVSLIKEQITRYIESKSEEWHPAPVVTMKDVEDLEKVKMSVCVTHKMNHQDMGERWNRRAALVEEIVKIFRQLDDEHQENVQNLASGAT | 709 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 543000 | 547136 | - | MC11g0077 | Mch11g0085 | 679019 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch11g0085 | 709 | MobiDBLite | consensus disorder prediction | 51 | 82 | - | - | |
Mch11g0085 | 709 | PIRSF | Memb_At2g17000 | 12 | 706 | IPR016688 | - | |
Mch11g0085 | 709 | SUPERFAMILY | Sm-like ribonucleoproteins | 540 | 599 | IPR010920 | - | |
Mch11g0085 | 709 | Gene3D | - | 550 | 599 | IPR023408 | - | |
Mch11g0085 | 709 | MobiDBLite | consensus disorder prediction | 85 | 115 | - | - | |
Mch11g0085 | 709 | Pfam | Mechanosensitive ion channel, beta-domain | 543 | 600 | IPR006685 | GO:0016020(InterPro)|GO:0055085(InterPro) | |
Mch11g0085 | 709 | MobiDBLite | consensus disorder prediction | 304 | 323 | - | - | |
Mch11g0085 | 709 | MobiDBLite | consensus disorder prediction | 36 | 50 | - | - | |
Mch11g0085 | 709 | MobiDBLite | consensus disorder prediction | 1 | 115 | - | - | |
Mch11g0085 | 709 | PANTHER | MECHANOSENSITIVE ION CHANNEL PROTEIN 5 | 41 | 701 | IPR016688 | GO:0005886(PANTHER)|GO:0006820(PANTHER)|GO:0008381(PANTHER) | |
Mch11g0085 | 709 | FunFam | Predicted mechanosensitive ion channel | 550 | 599 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch11g0085 | Mch-Chr11:543000 | Mch4g0458 | Mch-Chr4:2930402 | 1.11E-205 | dispersed | |
Mch11g0085 | Mch-Chr11:543000 | Mch2g0398 | Mch-Chr2:2916034 | 1.05E-231 | transposed |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch11g0085 | K22048 | - | mdm:103410417 | 766.148 |