Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0099 ATGGCGACGGCTACTGATTATTCGTCTAATCACCGTTCGCCTAAGGGAACAGGTTATACCGGCGATAATCTCAACAGCCCTGAGTTACGGCGGAGGAATCTTCGGTCTCCGTGGGCACAAGTCGTCCGAGGTGAGCCTGAATCGATCTCACCCGTCGATCAGTCTCCGTTGTCATCGTCATCATCGCTGTCTTCGCTGGCGGCTTCTGCAACCGAAACCCCCTCTACTGCTTCACCGCCCGCCGATAACTTCACATCCTCGGAGAACCACGATGCAAGTGACGGCGGCAATGCAACGGCTCCGACGAGGAAGCCGGCTTGGAACAAGCCTTCCAATGGCGTCGTTGATGCTGGTCCTGTAATGGGGGCAGATTCTTGGCCTGCTCTCTCGGACTCCGCTAGGGCTTCACCTAAATTAGCAGTCGATTCTCCTGTCAAGCCCACCATCGAAGTGTCAGTGCCCCCTTCTCAGGGATCTATTAATGTAACCCCTCAGCGGCAAGCTACAAATAATGCCAAATCAAACCCAAGTCCAAAGCATCCAGTGGCTGCTCGACAAAGATCGTCAAAGCGCGGTGGTGGTGGTGGCACCTCAGTAGGAGGACCTGCACGAGGAGACTTTTTCCGAGCTCCACCGCCTCCACCACCACCTTTTCCTGTATTTCACATTCCTGCAAGTAGTTACTGTAATTTGCTACCAGCAATTCCTGATCCTTCTCCTGGAGAACCATTGTTTGGGAGCAATAATTGGGATCCACGGGCAGTTGCAGGCTTTGTGCCTCAAACTAATTTTACTACTGACCACCGTAACTTCTTTCCTAGGGGGAATTTCACCTATCATCCTCGTGGTGATGGTCACTACCACAATAACCGTGGTGGAAAGCGTGATCAAGATCGTCGTCGAATATATTCTAATGCTCGAGATGTTCATTTTCAGCAGCACAGGGCAGCTCCTATTAGAGGCTTTATGAGGCCTTCGCCAGCTTACACTTCTCAGTTTCCCCAGCCTGTCAGACCTCATGCGAACCCTATGCCTCCACCTGAGTTTGTGTACGTCCCTACATTGCCCTTGGAGCCTTATAGAGGCATCCCATTCATGCCGCGACCTGTAATGTACCATTCTGCTGTAGATCCCTCTCTATCTGCATCGATAGTTCAACAGATTGAATATTATTTCAGCGATGATAATTTGATAACAGACACCTTTTTAAGGTCCTGGATGGACGATCAAGGCTGGGTTCCGATTTCTCTAATAGCTGCTTTTCCTCGAGTAAAGAAGCTGACAAACAATATCCAAATTGTGGTAGAATCATTAAGAACATCAACTTTCGTGGAAATGCAAGATAATAGGATCAGAAGGCGAAACGGGTGGAAGAGATTTGCAACAAATCCCAACTGGCTTAGAACTGATTTGTCCTCTTCTTCTCCAAGTGGATCAATTTATGATAATCTGGCAACTTCGTTTCAAAGGATCAGAGTGGATGAATGCACGAACCAAAGTATTACAAGTGATAGCGATCCATCACATAATACTGGGAGTGCTACTGAGATACGATCTTTCGAGCCAGCTGATAGTTCAGAACTTATTAATGGGGAGGTTAATCAGGATGTTCAGACTGATATCTGA 1626 48.28 MATATDYSSNHRSPKGTGYTGDNLNSPELRRRNLRSPWAQVVRGEPESISPVDQSPLSSSSSLSSLAASATETPSTASPPADNFTSSENHDASDGGNATAPTRKPAWNKPSNGVVDAGPVMGADSWPALSDSARASPKLAVDSPVKPTIEVSVPPSQGSINVTPQRQATNNAKSNPSPKHPVAARQRSSKRGGGGGTSVGGPARGDFFRAPPPPPPPFPVFHIPASSYCNLLPAIPDPSPGEPLFGSNNWDPRAVAGFVPQTNFTTDHRNFFPRGNFTYHPRGDGHYHNNRGGKRDQDRRRIYSNARDVHFQQHRAAPIRGFMRPSPAYTSQFPQPVRPHANPMPPPEFVYVPTLPLEPYRGIPFMPRPVMYHSAVDPSLSASIVQQIEYYFSDDNLITDTFLRSWMDDQGWVPISLIAAFPRVKKLTNNIQIVVESLRTSTFVEMQDNRIRRRNGWKRFATNPNWLRTDLSSSSPSGSIYDNLATSFQRIRVDECTNQSITSDSDPSHNTGSATEIRSFEPADSSELINGEVNQDVQTDI 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 648260 655490 + MC11g0088 Mch11g0099 679033

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0099 541 SUPERFAMILY Winged helix DNA-binding domain 373 460 IPR036390 -
Mch11g0099 541 SMART la 378 454 IPR006630 -
Mch11g0099 541 MobiDBLite consensus disorder prediction 150 177 - -
Mch11g0099 541 Pfam La domain 384 439 IPR006630 -
Mch11g0099 541 MobiDBLite consensus disorder prediction 499 520 - -
Mch11g0099 541 Gene3D - 372 461 IPR036388 -
Mch11g0099 541 CDD LAM 384 453 - -
Mch11g0099 541 MobiDBLite consensus disorder prediction 1 27 - -
Mch11g0099 541 PANTHER LUPUS LA PROTEIN-RELATED 149 504 IPR045180 GO:0003723(PANTHER)
Mch11g0099 541 ProSiteProfiles La-type HTH domain profile. 374 463 IPR006630 -
Mch11g0099 541 MobiDBLite consensus disorder prediction 1 215 - -
Mch11g0099 541 MobiDBLite consensus disorder prediction 51 96 - -
Mch11g0099 541 MobiDBLite consensus disorder prediction 499 541 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0099 K18757 - - csv:101220887 736.102
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0099 Mch-Chr11:648260 Mch1g1610 Mch-Chr1:17191502 2.24E-42 dispersed
Mch1g1609 Mch-Chr1:17184178 Mch11g0099 Mch-Chr11:648260 3.04E-46 wgd
Mch10g1787 Mch-Chr10:17627673 Mch11g0099 Mch-Chr11:648260 2.03E-16 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1168 . Blo12g00877 . Bda03g00295 . . Bma04g00255 . . . Cma01g01985 . Car01g01556 . . . . . . . . . . . . . . . . . . . Cone7ag1906 Cone17ag1422 Cone20ag0060 Lsi04g01766 Csa03g04297 Chy04g00400 . . . Bda08g01199 Bda01g01544 Bpe02g01740 Bpe05g00153 . Bma05g00183 Sed13g1555 Cmo01g02043 . . . . . . Cpe02g00060 Bhi09g02069 Tan01g5044 Cmetu04g1063 . . Mch11g0099 . . . . . . . . . . . Cme04g00449
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003873 7 2 3 2 2 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 2 2 1 44