Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0107 ATGGATTCACAAATTTCATTCATATTATATCTCCTAACAATCCAAATTTCAATATCAGGAGTTTTATCGACGACTTTCAGCATAGTGAACAAATGCGAGTACACGGTTTGGCCGGGCATTCTCACCAACGCCGGAGTTCCTCCACTTCCGACCACCGGTTTCGTTCTCCAGTCCGGCGAGTCTAGAACCATCTCCGCCCCCGCCTCCTGGGGCGGCCGCTTCTGGGGCCGGACCCGCTGCTCCCAAGATTCCACCGGCAAATTCTCCTGCCTCACCGGCGACTGCGGCTCCAATCAAATTGAGTGCGCCGGAAACGGCGCCAAGCCGCCGGCAACTCTGGCCGAGTTCACACTCGACGGCGCCGGCGGGCTCGATTTCTTCGACGTCAGCTTGGTCGACGGTTACAACATCCCTATGCTGGTGGTCCCACAAGGCGGGAGCGGCGACAAATGCATGAGCACCGGCTGTCTGGTGGATTTGAACGGCGCGTGTCCGTCGGAGCTCAAGGTGACGAGCGTGGACGGGGGAGAGAGCGTGGCGTGCAAGAGCGCGTGCGAAGCGTTTAACCAGCCGCAGTACTGCTGCAGCGGCGAGTACGCGACGCCCAATACTTGCAAGCCATCCGCGTACTCGCAGGTGTTCAAGAGCGCGTGCCCACGCGCTTACAGCTACGCCTACGACGACGAAACCAGCACGTTTACATGTGCCGACGCCGACTATATCATTACCTTCTGCCCTACACCCAACACCAGCCAGAAATCGACGGAAGACCACAACACGGGAGTCCATAACACAAACACGCCGGCGATCAACGGCGGCAACGGCAACGGCACCATGATTTACGAAGGGGCTTACTTTGATCAAAGCGACGCGTCCCGGCCAACGCTCCGCCGTGTGCTCGGCGTAGTCATTGCCGCCGTGGCTGTTCTTCAAGTTCGCCAACTCATTTGA 951 58.25 MDSQISFILYLLTIQISISGVLSTTFSIVNKCEYTVWPGILTNAGVPPLPTTGFVLQSGESRTISAPASWGGRFWGRTRCSQDSTGKFSCLTGDCGSNQIECAGNGAKPPATLAEFTLDGAGGLDFFDVSLVDGYNIPMLVVPQGGSGDKCMSTGCLVDLNGACPSELKVTSVDGGESVACKSACEAFNQPQYCCSGEYATPNTCKPSAYSQVFKSACPRAYSYAYDDETSTFTCADADYIITFCPTPNTSQKSTEDHNTGVHNTNTPAINGGNGNGTMIYEGAYFDQSDASRPTLRRVLGVVIAAVAVLQVRQLI 316
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 714752 716949 - MC11g0096 Mch11g0107 679041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0107 316 Pfam Thaumatin family 30 246 IPR001938 -
Mch11g0107 316 SUPERFAMILY Osmotin, thaumatin-like protein 24 246 IPR037176 -
Mch11g0107 316 PIRSF PR5 1 282 IPR001938 -
Mch11g0107 316 Gene3D Thaumatin 24 246 IPR037176 -
Mch11g0107 316 FunFam THAUMATIN-LIKE PROTEIN 1 24 246 - -
Mch11g0107 316 SMART tha2 26 246 IPR001938 -
Mch11g0107 316 PANTHER OS03G0233200 PROTEIN 8 246 IPR001938 GO:0005576(PANTHER)|GO:0006952(PANTHER)
Mch11g0107 316 ProSiteProfiles Thaumatin family profile. 23 246 IPR001938 -
Mch11g0107 316 CDD TLP-PA 25 245 - -
Mch11g0107 316 PRINTS Pathogenesis-related protein signature 125 141 IPR001938 -
Mch11g0107 316 PRINTS Pathogenesis-related protein signature 236 245 IPR001938 -
Mch11g0107 316 PRINTS Pathogenesis-related protein signature 73 84 IPR001938 -
Mch11g0107 316 PRINTS Pathogenesis-related protein signature 25 37 IPR001938 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch10g0004 Mch-Chr10:33543 Mch11g0107 Mch-Chr11:714752 1.84E-95 dispersed
Mch11g0107 Mch-Chr11:714752 Mch2g1004 Mch-Chr2:6814752 1.72E-123 dispersed
Mch10g0528 Mch-Chr10:3455079 Mch11g0107 Mch-Chr11:714752 4.99E-74 transposed
Mch1g1590 Mch-Chr1:17070513 Mch11g0107 Mch-Chr11:714752 3.66E-100 wgd
Mch10g1760 Mch-Chr10:17448613 Mch11g0107 Mch-Chr11:714752 3.93E-118 wgd
Mch11g0107 Mch-Chr11:714752 Mch2g1003 Mch-Chr2:6804566 6.32E-86 wgd
Mch11g0107 Mch-Chr11:714752 Mch8g0857 Mch-Chr8:6102803 1.78E-151 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0107 - - - 0.0