Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0110 ATGGCTGGTGAATATAGGTTCGCAATGGACCAAAAGGACATTGTGAGGTTATTGGTTGCCACCATTGATGATTTCACCCTAGGTCGTTTAATCAATAAAGAGCAGAGGAACCTGCACAAAGAGCAGTGTGCTGAGAGGCTGGCAGCTGAAGATGGAAGCGATGGCAAAGATGCAGAAGTTAGGTACTCTGATCAAGCAGTGCTGGCGAATTTGGATTGGGGTATTGAAGCCCTTGAGGAGGCTCTCAACACATCCAATATGGAAACTAAATTTGCGCGACTTGACCATGCGGAGAAGATGCTTCAAGTGTGTGCCTTGTTGAACTCTAACGAGAAAACTGCTGGAGTTCCCAACTTCTACCTTTCTGCTTGGGCTCATCTAAATCTTTCATATCTCTGGAAATTGCGAGGAAATGTTAACAACTCAGTTCTTCATATTCTTGAGATGTTTATAGTGGATCCCTTATTTTCACGCATTGATTTTGCTCCTGATCTCTGGAAAGAACTCTTTCTACCCCACATGAGCTCAATTGTTGGGTGGTATTCAGAGGAGAGGCACAGGCTTATGATCGAAGTGATTCCTGATTCCTCTGATTTATCTTTCACAGCTGACTTAGATCAATTCTTCAACGAATCTTTGATATTCTCGCTGAGGCCTGATCAGGGGGAGAAATTGCATAAATTGGAGCAGCTTTATGGCGAATCTTTGGACAAGAACACAAGGCTCTTTGCTAAATACTTCAAGGATTGTATGAATGCTGATTCAAGCTCTACCAAGAAGGTTGCACCGATGCTGCCAATCGCGGAGCCACCTATGACTCCTCTTCACGAAGTGAGCCGCTCAATTCCAGATTACGTAAAATTCGGACCTATTTTACCCAAGAGTGCCGGGTTTTCGTCCATACCAAAATCTAAAGATGGTGCAACAGAAGCAAGCAGGCCAAAGGAGACTTCCAATTCAGCCAACAACACGGAGAAATTTGCACGGTGGCATGCTCAGACTGATTCGCTAGAGGAGAATGAGGACGATTCTGATCATGAACCTTACGATTCTTACGATCTCAGTGATACTACAACTCATAAGTTACTATCACCTAGTAGCACCAGGACGTCGGAGGATGAACAAACAGAATCTAAAGCAGAGATGTCGAAAGTGAGGAGTCGCATACATTCTCCCACTATTTTTTCTCCAATTGCATCTCCTTCAATCCCTTCACCGAAAGTTTCGTCTCCAAAAATGGATGAGAAATGTAAAAGTGGACCTCATTCTGCGCTGCGACTATTATCCAGCCGCTGCAGCGATCGACGTGTTGCTACCCCTGTAGCCGGATCACCAGCAATTAGGAGCGATTACAGCTTCAGTTCGGTAGAGTCTGATGGTGATGACTTGAAGAAAAACTGCAGGAAAAGCTATAGGCAAACATGCAATGTAACCTATGACAACGTGAGTAGCCAAGACTTCGAGAATTGTTCAATAGACGAACTTGAGGAGGAAAGCAGAAGTCGATTGTCTGAAAATCCGACACACGTGGTGCGACCCCCTAAAGACTTCGTATGCCCCATAACAGGTCAGATTTTCAGTGATCCTGTTACTCTAGAAACTGGGCAGACTTATGAAAGAAAAGCGATTCAGGAATGGTTAAAAAGAGGAAATACAACTTGCCCCATTACACGGCAGCCATTGTCTTCAACTGTATTGCCTAAGACGAATTATGTCTTGAAGAGACTGATAACGTCTTGGCAAGAACAGCATCCTGATCTTGCTCAAGATTGTTCGTGGACTGGTACATCAGTAAGTACTGTCAGTTCCGCCTTCAAAAAGGCGAGCTCTCTGGCATCTACTCCTAGCAGATCATCTTACCTTCCTCTTAGCAATACGTACGGGTCTCTAAACCAAAAAGGCAAAAGATTAATGCAAGTGGCAGTGGCTTCATCGCCGACAAGTGTAATCTCTCAAGCTACAGTCGAGAAGATCATTAGCAATTTAAAACCTTTTGTCTCTTGTCTTTGTAATTTCGAAAACTTGAAACAATGTGAAACAGCTGTGCTCGCCATAGCAGGATTTTGGAGGGACTCAATATGTGATCCAGCAGTTCATTCTTATTTATCTGAATTGGCTGTTGTCAACGGATTTGTGGAAATATTACTAAATTCCCAGGAAAGAGAAGTTCTCAGAACGTCAATCTACATTCTTTCTGAGCTTGTTTGTGCAGATGAAAGTGTTGGAGAGTCCCTTAGTAGTCTAGATTCGGATTTTGATTGCCTAGCTTCTTTACTGACGAGTGGGTTGGCAGAGGCTTCTGTTCTTATGTGCCTGCTGAGGCCTACATTTACTCAGTTATTAGCTCATGACCTAATACCTTCCCTCGTCCAGCTGCTCCAGAAGAAAAATGAAGATTTTGATGATCTTCCGTTTATAATAGAGCCAAAGGATGCAGCTATCGCAATGCTTGAACAAATTCTTATGGGAGGGAATGAAAATAGCCAATCCCAGAATGCTAAGAGTCTTATCTCTGCTAAAGGGATCCCTGCATTGGTCAAGTTTTTGGATGGGATAGAAGTGAGGAGGTCAATACTTTCCATGCTTTTATGTTGTATGCGGGTGGACAATGGTTGCAAGAACTCGATAGTAGAGGAGATAGAGCTTGTTCCAGTACTTGAGTTATTTCATGCTGGAAGTGATGACGAGAGAGGCCTGTGTGCTGCTTTTCTATCAGAGCTGGTTCAGTTGAACAGTAGGACAATATGCAATCAAATATTGCAGACAATTAAAGACGAAGGAGCATTTAGTATGATGCATACACTTCTAACACATCTTCAAATGGCTCCAATGGAACAACAACCGAGCATTGCTTCTCTTCTTCTGCAGCTGGATCTCCTGGTTGAACCACGAAAAATGAGCATTTACCGAGAAGAATCAATAGATGCCTTGTTTGAAGCTTTTCGAAAAAAGGAAAACTATAATTCTCAAATTGCAGCTCTAGATGCTTTATTGTGTCTATCTGGGCGATTGACTTCCTCAGGGAAGTCCTATACAAAAGCGTGGTTGCTCAAACTTGCAGGATTTGATCAGCCTTACAATGCTTTGATGAAGGCCGAGGGACTGAGGAAGCCTGATAGCGAATTATTGGAGACGGTGGAGGAAGAGAAGGCTGTCAGCACGTGGGAGAAAAGGGTAGCACTTGTTCTTTGTAATCATGAAAAAGGGTACATTTTTAAAGTCTTGAAGGAATGCCTAAAGAGTAAATCCTTAGAGATTGCAAAGTCCTGTCTTGTCATTGTTTCGTGGCTCTGCCACATGCTTTCGACACTCCCAGATACTGGGGTACAGGAGACTGCTCGCAGGTCCTTGCTTGATGAACTTGTAAACATTATCCAATCTTCTAATAGCTTGGAGGAGAAGATTTTGGCATGCCTTGCTTTGAAAACTTTCATTAGCGATCCAGCTGCACTCGAGGAACTGGGACTTTGTGCAAGATCCATCAACGAAACGTTGAGAAAGCTCAGGAGAAGCTCATTGGTGGTCAATGATATAACGAAAGCCTTGATGAACTTGCCATCTGTTGACGCAGTAAAGCTTTGGAGTTATACTGAAGTTGGTGCACTAGATTCGAGCTCAAATGGAGAGGTTACATCCCTGGTTCATCTGAATGGGCGAGTTCTAAGCAGTCACTCGGATGGAACCATAAAGGTTTGGGATGCTGGAAATAAAGTATTAAGGTTGATCCAAGAAGCTCGTCAGCACACAAAAGCTGTAAAGTGCCTTTGTGTTTCTTCATCCGGCGACACATTATACAGTGGTTCCTTAGACAAAACAATTAGGATATGGGCCATCAAATCCGAAGAAATACAGTGCATTCAAGTTCATGAAGTGAAGGAGGCGGTTTATGACTTAAAAGCCAATGCCGACGTCGCATGCTTTGTTTCTCAAGGAACTGGAGTTAAGGTTTACAACTGCTCCGGAGTCCCCAAGCATATTAATTTCAACAAATACGTTAAATGCCTGGCGTTATCAGAAGATAAACTCTATTGTGGTTGCTCCAGTGACAGTATACTGGAGGTAGATTTGTCCAACTACACAACGAGCACATTCTATGCTGGTGTTAGAAAATTGCTGTGGAAGCAGAACATCTATTCTTTGCACATCAATGGCGACCTAATGTTTGCCGGAGGTTCTTTGGTGGATGCAACAGCCGGGAAGGTATTTTCGCTGTCTAATAAGGCAGCAGTGGGATCCTTGTCGACTGGAGTAGACATCCACCACATGGCCATAAGCACCGACTTCTTGTTTACAGCCTCTAGATGTGGTATAATAGATGTCTGGTCGAAAGAAAAGTTGACAAAAGTTGCTTCACTTAAATTAGGTAATGCTAGTGGTAGCCACACAAAGCTTACTGCCCTAACCACAGATGATGATGGGGAATTGCTCCTTGCCGGCACCTCTGATGGAAAAATACAGGTTTGGGCTCTGCAATGA 4476 43.41 MAGEYRFAMDQKDIVRLLVATIDDFTLGRLINKEQRNLHKEQCAERLAAEDGSDGKDAEVRYSDQAVLANLDWGIEALEEALNTSNMETKFARLDHAEKMLQVCALLNSNEKTAGVPNFYLSAWAHLNLSYLWKLRGNVNNSVLHILEMFIVDPLFSRIDFAPDLWKELFLPHMSSIVGWYSEERHRLMIEVIPDSSDLSFTADLDQFFNESLIFSLRPDQGEKLHKLEQLYGESLDKNTRLFAKYFKDCMNADSSSTKKVAPMLPIAEPPMTPLHEVSRSIPDYVKFGPILPKSAGFSSIPKSKDGATEASRPKETSNSANNTEKFARWHAQTDSLEENEDDSDHEPYDSYDLSDTTTHKLLSPSSTRTSEDEQTESKAEMSKVRSRIHSPTIFSPIASPSIPSPKVSSPKMDEKCKSGPHSALRLLSSRCSDRRVATPVAGSPAIRSDYSFSSVESDGDDLKKNCRKSYRQTCNVTYDNVSSQDFENCSIDELEEESRSRLSENPTHVVRPPKDFVCPITGQIFSDPVTLETGQTYERKAIQEWLKRGNTTCPITRQPLSSTVLPKTNYVLKRLITSWQEQHPDLAQDCSWTGTSVSTVSSAFKKASSLASTPSRSSYLPLSNTYGSLNQKGKRLMQVAVASSPTSVISQATVEKIISNLKPFVSCLCNFENLKQCETAVLAIAGFWRDSICDPAVHSYLSELAVVNGFVEILLNSQEREVLRTSIYILSELVCADESVGESLSSLDSDFDCLASLLTSGLAEASVLMCLLRPTFTQLLAHDLIPSLVQLLQKKNEDFDDLPFIIEPKDAAIAMLEQILMGGNENSQSQNAKSLISAKGIPALVKFLDGIEVRRSILSMLLCCMRVDNGCKNSIVEEIELVPVLELFHAGSDDERGLCAAFLSELVQLNSRTICNQILQTIKDEGAFSMMHTLLTHLQMAPMEQQPSIASLLLQLDLLVEPRKMSIYREESIDALFEAFRKKENYNSQIAALDALLCLSGRLTSSGKSYTKAWLLKLAGFDQPYNALMKAEGLRKPDSELLETVEEEKAVSTWEKRVALVLCNHEKGYIFKVLKECLKSKSLEIAKSCLVIVSWLCHMLSTLPDTGVQETARRSLLDELVNIIQSSNSLEEKILACLALKTFISDPAALEELGLCARSINETLRKLRRSSLVVNDITKALMNLPSVDAVKLWSYTEVGALDSSSNGEVTSLVHLNGRVLSSHSDGTIKVWDAGNKVLRLIQEARQHTKAVKCLCVSSSGDTLYSGSLDKTIRIWAIKSEEIQCIQVHEVKEAVYDLKANADVACFVSQGTGVKVYNCSGVPKHINFNKYVKCLALSEDKLYCGCSSDSILEVDLSNYTTSTFYAGVRKLLWKQNIYSLHINGDLMFAGGSLVDATAGKVFSLSNKAAVGSLSTGVDIHHMAISTDFLFTASRCGIIDVWSKEKLTKVASLKLGNASGSHTKLTALTTDDDGELLLAGTSDGKIQVWALQ 1491
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 729513 737438 + MC11g0098 Mch11g0110 679044

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0110 1491 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 513 587 IPR013083 -
Mch11g0110 1491 MobiDBLite consensus disorder prediction 299 420 - -
Mch11g0110 1491 Gene3D - 1187 1367 IPR015943 GO:0005515(InterPro)
Mch11g0110 1491 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1457 1491 - -
Mch11g0110 1491 Gene3D - 1368 1491 IPR015943 GO:0005515(InterPro)
Mch11g0110 1491 ProSiteProfiles Trp-Asp (WD) repeats profile. 1457 1491 IPR001680 GO:0005515(InterPro)
Mch11g0110 1491 MobiDBLite consensus disorder prediction 372 386 - -
Mch11g0110 1491 SUPERFAMILY WD40 repeat-like 1218 1490 IPR036322 GO:0005515(InterPro)
Mch11g0110 1491 MobiDBLite consensus disorder prediction 313 330 - -
Mch11g0110 1491 SUPERFAMILY RING/U-box 503 586 - -
Mch11g0110 1491 SMART Ubox_2 516 580 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch11g0110 1491 Pfam WD domain, G-beta repeat 1204 1233 IPR001680 GO:0005515(InterPro)
Mch11g0110 1491 Pfam WD domain, G-beta repeat 1461 1488 IPR001680 GO:0005515(InterPro)
Mch11g0110 1491 Pfam WD domain, G-beta repeat 1243 1276 IPR001680 GO:0005515(InterPro)
Mch11g0110 1491 ProSiteProfiles Trp-Asp (WD) repeats profile. 1245 1282 IPR001680 GO:0005515(InterPro)
Mch11g0110 1491 ProSiteProfiles U-box domain profile. 512 587 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch11g0110 1491 SMART WD40_4 1195 1233 IPR001680 GO:0005515(InterPro)
Mch11g0110 1491 SMART WD40_4 1406 1442 IPR001680 GO:0005515(InterPro)
Mch11g0110 1491 SMART WD40_4 1445 1489 IPR001680 GO:0005515(InterPro)
Mch11g0110 1491 SMART WD40_4 1279 1318 IPR001680 GO:0005515(InterPro)
Mch11g0110 1491 SMART WD40_4 1238 1277 IPR001680 GO:0005515(InterPro)
Mch11g0110 1491 MobiDBLite consensus disorder prediction 355 371 - -
Mch11g0110 1491 CDD RING-Ubox_PUB 514 566 IPR045210 -
Mch11g0110 1491 Pfam U-box domain 514 584 IPR003613 GO:0004842(InterPro)|GO:0016567(InterPro)
Mch11g0110 1491 SUPERFAMILY ARM repeat 820 1153 IPR016024 -
Mch11g0110 1491 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 1245 1282 - -
Mch11g0110 1491 MobiDBLite consensus disorder prediction 389 407 - -
Mch11g0110 1491 PANTHER RING-TYPE E3 UBIQUITIN TRANSFERASE 4 1490 IPR052858 -
Mch11g0110 1491 Gene3D - 641 960 IPR011989 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0110 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0110 Mch-Chr11:729513 Mch6g0824 Mch-Chr6:5704302 1.46E-209 dispersed
Mch11g0110 Mch-Chr11:729513 Mch2g0219 Mch-Chr2:1679765 1.43E-13 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1121 Blo01g01601 . Bda01g00480 . Bpe02g00344 . . Bma01g02371 . . . Cma09g00101 . . . Cpe06g00063 . . . . . . . . . . . . . . . Cone4ag1974 Cone7ag1892 . . . Csa03g04286 Chy04g00411 . . . . . . . . . Sed08g0779 . Cmo09g00097 . . . Car09g00089 . . Bhi09g02080 Tan01g5029 Cmetu02g0590 . Hepe01g1609 Mch11g0110 . . . . . . . . . . . Cme04g00462
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005991 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 2 1 2 6 1 39