Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0119 GGAGGAGATTTCGAACTCGAACTCGTAGTTCAACTACCTGAGTTATATTCAAGATCGCAAAAATACTTATTTATCTTTCAAACATTTTTTTCCTTGTTTCGAATAAAATTGAAAGTGACTTATTCAAAATGTTTGGGATTATGGAAAATAATAAAAATATATAACGAAATTAGAATTTTTAAAAGTAATTTCAAAACCGCATTTCCAACTTTGTGCGCTGAATTCGGCCTCCGAAAATCAATTCGAGCTCGTTTCGTGGATCTTCATTCGCCGTCTTCAAGAATGATCCGGTTCATACTTTTGCAAAACAGGCAGGGCAAGACTCGTCTGGCTAAGTACTATGTTCCTCTTGAGGAATCCGAGAAGCACAAGGTCGAATACGAGGTTCACCGATTGGTGGTGAATAGAGATCCCAAGTTCACAAATTTCGTTGAGTTCCGAACACATAAGGTAATCTACAGACGATATGCCGGGTTATTTTTCTCTCTTTGTGTGGACATAACCGACAATGAGTTGGCATATCTCGAGTGTATTCATTTGTTTGTGGAGATTTTGGATCACTTCTTCAGCAATGTTTGTGAGCTCGATTTGGTTTTTAACTTTCACAAGGTTTATCTGATACTTGACGAATTCATTCTTGCTGGAGAGCTCCAAGAAACAAGCAAAAAGGCGATTATTGAAAGAATGGGGGAGCTGGAAAAGCTGGAGTGA 711 38.26 GGDFELELVVQLPELYSRSQKYLFIFQTFFSLFRIKLKVTYSKCLGLWKIIKIYNEIRIFKSNFKTAFPTLCAEFGLRKSIRARFVDLHSPSSRMIRFILLQNRQGKTRLAKYYVPLEESEKHKVEYEVHRLVVNRDPKFTNFVEFRTHKVIYRRYAGLFFSLCVDITDNELAYLECIHLFVEILDHFFSNVCELDLVFNFHKVYLILDEFILAGELQETSKKAIIERMGELEKLE 236
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 766369 769107 - MC11g0106 Mch11g0119 679053

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0119 236 FunFam AP complex subunit sigma 95 236 - -
Mch11g0119 236 PANTHER ADAPTOR COMPLEXES SMALL SUBUNIT FAMILY 96 234 IPR016635 GO:0015031(InterPro)|GO:0016192(PANTHER)|GO:0043231(PANTHER)
Mch11g0119 236 CDD AP2_sigma 95 235 IPR027156 GO:0016192(InterPro)|GO:0030122(InterPro)|GO:0035615(InterPro)|GO:0072583(InterPro)
Mch11g0119 236 Gene3D - 95 236 - -
Mch11g0119 236 SUPERFAMILY SNARE-like 95 230 IPR011012 -
Mch11g0119 236 Pfam Clathrin adaptor complex small chain 95 235 IPR022775 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0119 K11827 - - mdm:103450388 290.041
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0119 Mch-Chr11:766369 Mch4g0369 Mch-Chr4:2334132 4.14E-48 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1106 Blo01g01596 . Bda01g00487 . Bpe02g00351 . . Bma01g02367 . . . Cma09g00104 . . . Cpe06g00066 . . . . . . . . . . . . . . . Cone4ag1969 Cone7ag1885 . . Lsi04g01743 Csa03g04278 Chy04g00419 . . . . . . . . . Sed14g1116 . Cmo09g00100 . . . Car09g00094 . . Bhi09g02091 Tan01g5014 Cmetu04g0002 . Hepe01g1616 Mch11g0119 . . . . . . . . . . . Cme04g00471
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001475 3 2 2 4 3 2 4 2 1 2 1 2 4 2 2 4 2 2 4 2 2 2 2 2 2 2 2 3 2 4 73