Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0134 ATGGGCTCTGTGGAAGAGAAGATCAAGACTACAGGAGGAGGAGTAGGAGGAGGAGGTTTGATTATTAACGGGCCTCAGACTAGCCTTTTCGACGAGATGAAGTTGTTGAAAGAAATGCAAGATCAGACAGGGGCCCGAAAGGCTATAAACTCAGAGCTGTGGCACGCTTGCGCTGGTCCGCTTGTTTCTTTGCCCCATGTGGGGAGTCTTGTTTTTTACTTCCCTCAAGGCCATAGCGAGCAGGTGGCAGTTTCTACCAAGAGAACAGCAACCTCACAAATTCCTAATTATCCAAATCTTCCCTCTCAGTTGATGTGCCAAGTTCAAAATGTTACCCTACATGCCGATAAAGATTCAGATGAAATCTATGCTCAAATGAGTCTTCAACCCGTGAACTCTGAGAAAGATGTCTTCCTAGTTCCGGACTTTGGACTAAGGCCAAGTAAACACCCAAACGAGTTCTTCTGCAAAACTTTGACTGCCAGTGACACCAGCACACATGGTGGGTTCTCAGTGCCACGAAGGGCTGCTGAAAAACTCTTTCCTCCATTGGATTACACAATGCAACCACCAAATCAGGAACTTGTTGTCCGAGACTTGCACGACAATATCTGGACTTTTCGCCACATATATCGCGGGAAGCCGAAGAGACACCTTCTCACAACTGGGTGGAGTCTATTCGTTGGAGCAAAGAGACTCAGAGCAGGCGATTCTGTCCTTTTTATAAGGGATGAAAAGTCCCAGTTGATGATTGGAGTTAGGCGTGCTAACCGGCAACAAACTACTTTGCCATCATCGGTTCTATCTGCTGATAGTATGCATATAGGGGTTCTTGCTGCTGCAGCTCATGCTGCGGCTAATCGAAGTCCATTCACAATCTTCTATAACCCCAGGGCATGTCCTTCAGAGTTTGTTATTCCTTTGGCCAAGTACCGAAAATGTGTATACGGAACCCAGCTTTCTGCAGGCATGAGGTTCGGGATGATGTTTGAGACTGAAGAGTCCGGTAAACGCCGATATATGGGTACAATTGTTGGAATCAGCGATTTAGATCCACTAAGGTGGCCAGGTTCCAAGTGGCGAAATCTTCAGGTGGAGTGGGATGAGCCAGGGTGCTGCGATAAGCAGAGCAGGGTTAGTTCATGGGAGATTGAAACTCCAGAAAGTCTTTTCATTTTTCCTTCTCTGACTTCGGGTCTAAAACGTCCATTACACAGCGGATTTTTGGGAGAAACTGATTGGGGAAGTTTGGTGAAGAGACCAGTGCTTCGTGTTCCTGAAAATGTTCGTGGGGATCTTTCATATGCGGCGCCAACTTTATGCTCTGAACCTCTGATGAAGATGCTACTGAGGCCTCAAATGGTTAACCTTCATGGAGGAGCCACCACACAGCAGGATTCAGTTAATAATTTAGTTAAGTTACAGGACATGAAGGGCATGCAGCCAATAATCAATCCGAAAATGCAGCAGCAGCAGCAGCAGCTTATTTCGTCAGAAACTGCATCTCCTCAAAATCAAAATCACCACCATCCAGCACCTACACCTACACAATCTGATGCCATAAACTCAACTTCATCACCAGAAACCAATCTACCCGGAAATGTACACGCTTCGGCGGCCATTGAAAGTGAAGCACCTACTGGAGCTGATGTAGTAGACAAGCCAAAATATGAACGTCATCTTTCAACCAATGAGTCTAACAATCCATTGCCCCCGGTTGGAGATTGTGGGGAGGAAAAACTCAGTGGCAACGACGTGAATATGCAGACCCTCGTAAACCAGCTTTCGTTTGTGAACCAGAATCAGATCCCCATGATGCAGTTGCAACCTGTATCATGGCCTATTCAGCAGCCGCAGCTGGAATCACTAATCCCACACCCACAACCAATTGACATGCCTCAGCCTGAATTTACAAATTCAAATGGTTTGATTTCATCCCTGGATGGCGATGGATGTTTAATTAACCCATCCTGTCTACCACTACCTGGAGTAATGAGATCACCAGGGAGTCTCTCTATGTTGGGATTGCAAGAATCCTCAACAATGTTTCCTGAGGCTCTTAATTTTCCTTTACCCTCTACAACCCAGGACATGTGGGATCCTCTTAATAGTATAAGATTCCCATCTCAGACCAATCATCTCGTTTCCTTCTCTCACCCAGACGCTTCTAACCTGAACTGTATGGCTGTTAATGCGAATGCTATGAGAGATGTTTCAGACGAGAGCAACAACCAAAGTGGGATATACAGTTGTTCGAACCTTGAAATCAGTAATTGCGGAAGTGCTTTGGTTGATCCTGCTGTTTCAAGCACCATTCTTGATGATTATTGCACATTCAAAGATGCCGACTTCCCAAACCCTTCAGATTGCTTGGCTGGGAACTTCAGTTCAAGCCAAGATGTTCAGTCTCAGATCACCTGTGCTAGTCTGGGAGATTCTCAGGCTTTCTCCAGGCAAGAGTATCATGATAATTCAGGCGGTACATCCTCATGCAACGTGGATTTTGATGAGGGCAGTCTTCTGCAGAATGGCTCATGGAAGCAAGTGGTGCCGCCCATGAGAACTTACACCAAGGTCCAGAAGGCGGGATCTGTTGGAAGGTCAATTGATGTCACTAGTTTTAAGAACTACGACGAATTATGCTCTGCGATCGAATGTATGTTTGGACTTGAAGGGTTGCTTAATGACCCAAGAGGCTCAGGATGGAAACTGGTTTATGTGGATTATGAGAACGACGTCCTGCTTATTGGTGATGATCCCTGGGAGGAATTTGTCAGCTGCGTTCGGTGTATCAGAATCTTGTCACCTTCAGAAGTTCAGCAAATGAGCGAAGAGGGAATGAAGCTTCTCAACAGTGCTATGATGCAAGGTGTCAATTGCTCCATATCAGAAGGTGGCGGAGCTTGA 2907 46.06 MGSVEEKIKTTGGGVGGGGLIINGPQTSLFDEMKLLKEMQDQTGARKAINSELWHACAGPLVSLPHVGSLVFYFPQGHSEQVAVSTKRTATSQIPNYPNLPSQLMCQVQNVTLHADKDSDEIYAQMSLQPVNSEKDVFLVPDFGLRPSKHPNEFFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTMQPPNQELVVRDLHDNIWTFRHIYRGKPKRHLLTTGWSLFVGAKRLRAGDSVLFIRDEKSQLMIGVRRANRQQTTLPSSVLSADSMHIGVLAAAAHAAANRSPFTIFYNPRACPSEFVIPLAKYRKCVYGTQLSAGMRFGMMFETEESGKRRYMGTIVGISDLDPLRWPGSKWRNLQVEWDEPGCCDKQSRVSSWEIETPESLFIFPSLTSGLKRPLHSGFLGETDWGSLVKRPVLRVPENVRGDLSYAAPTLCSEPLMKMLLRPQMVNLHGGATTQQDSVNNLVKLQDMKGMQPIINPKMQQQQQQLISSETASPQNQNHHHPAPTPTQSDAINSTSSPETNLPGNVHASAAIESEAPTGADVVDKPKYERHLSTNESNNPLPPVGDCGEEKLSGNDVNMQTLVNQLSFVNQNQIPMMQLQPVSWPIQQPQLESLIPHPQPIDMPQPEFTNSNGLISSLDGDGCLINPSCLPLPGVMRSPGSLSMLGLQESSTMFPEALNFPLPSTTQDMWDPLNSIRFPSQTNHLVSFSHPDASNLNCMAVNANAMRDVSDESNNQSGIYSCSNLEISNCGSALVDPAVSSTILDDYCTFKDADFPNPSDCLAGNFSSSQDVQSQITCASLGDSQAFSRQEYHDNSGGTSSCNVDFDEGSLLQNGSWKQVVPPMRTYTKVQKAGSVGRSIDVTSFKNYDELCSAIECMFGLEGLLNDPRGSGWKLVYVDYENDVLLIGDDPWEEFVSCVRCIRILSPSEVQQMSEEGMKLLNSAMMQGVNCSISEGGGA 968
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 866468 872599 + MC11g0121 Mch11g0134 679068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0134 968 ProSiteProfiles B3 DNA-binding domain profile. 155 257 IPR003340 GO:0003677(InterPro)
Mch11g0134 968 FunFam Auxin response factor 319 391 - -
Mch11g0134 968 SMART B3_2 155 257 IPR003340 GO:0003677(InterPro)
Mch11g0134 968 Pfam Auxin response factor 281 364 IPR010525 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Mch11g0134 968 MobiDBLite consensus disorder prediction 487 533 - -
Mch11g0134 968 Pfam B3 DNA binding domain 155 256 IPR003340 GO:0003677(InterPro)
Mch11g0134 968 CDD B3_DNA 154 255 IPR003340 GO:0003677(InterPro)
Mch11g0134 968 FunFam Auxin response factor 850 943 - -
Mch11g0134 968 MobiDBLite consensus disorder prediction 560 579 - -
Mch11g0134 968 Gene3D - 851 943 - -
Mch11g0134 968 Pfam AUX/IAA family 854 942 IPR033389 -
Mch11g0134 968 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 48 946 IPR044835 GO:0003677(InterPro)|GO:0006355(InterPro)|GO:0009725(InterPro)
Mch11g0134 968 SUPERFAMILY DNA-binding pseudobarrel domain 142 284 IPR015300 -
Mch11g0134 968 ProSiteProfiles PB1 domain profile. 854 938 IPR053793 -
Mch11g0134 968 Gene3D - 319 391 - -
Mch11g0134 968 MobiDBLite consensus disorder prediction 487 534 - -
Mch11g0134 968 SUPERFAMILY CAD & PB1 domains 852 933 - -
Mch11g0134 968 Gene3D - 153 256 IPR015300 -
Mch11g0134 968 FunFam Auxin response factor 153 257 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0134 Mch-Chr11:866468 Mch8g3259 Mch-Chr8:34534366 1.75E-193 dispersed
Mch11g0134 Mch-Chr11:866468 Mch1g2064 Mch-Chr1:20009579 7.97E-197 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42541 PF02362 B3 1.60E-20 CL0405 Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0134 K14486 - csv:101216825 1704.88