Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0147 ATGAAGATTCAGTGCGACGCCTGCAACAAAGACGAGGCGCTGCTGTTCTGCACCGCCGACGACGCCGCCCTCTGCGAAGCCTGCGACCACCGCGTCCACCGCGCCAATATCCTCGCCTCCAAACACCACCGCTTCCCCCTCCTCCACCCTTCCAACGACCACTTCCCCCTCTGCGACATCTGCCAGGAGAGGCGAGCTTTTCTGTTCTGCCAGCAGGACCGAGCGATTCTATGCCGAGACTGCGATCTTCCCATCCACGCCGTCAACGAACTCACCCAGAAACATGATCGATTCCTACTGACTGGGATTAAGCTTTCTTGTGTTTCTGCGCTCAACGCGGCCTCTTCTTCATCCGAGGCGAGCTTCGCGTTTAATTCTGACCCTAATTCGCAACCCCTGTTCGAGAAGACTGCCAATGCTTCTGCCCCTGTTTCGCATTCGCCTTCTCTTGCCGAGAGTTCGATGTCTAACGTGCCGGTGGCGGCTGCCTCCGCCGATGGGGGTGACCCGACGGATACCGTGTCGGAGTATTTGATTGAGACGATTCCCGGATGGAATTTGGAGGAGTTTCTCGATTCGTCCTCTGCTCCT 591 57.53 MKIQCDACNKDEALLFCTADDAALCEACDHRVHRANILASKHHRFPLLHPSNDHFPLCDICQERRAFLFCQQDRAILCRDCDLPIHAVNELTQKHDRFLLTGIKLSCVSALNAASSSSEASFAFNSDPNSQPLFEKTANASAPVSHSPSLAESSMSNVPVAAASADGGDPTDTVSEYLIETIPGWNLEEFLDSSSAP 197
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 924436 925099 - MC11g0132 Mch11g0147 679081
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0147 197 FunFam B-box zinc finger protein 21 1 98 - -
Mch11g0147 197 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270(InterPro)
Mch11g0147 197 CDD Bbox1_BBX-like 5 47 IPR049808 -
Mch11g0147 197 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 193 IPR051979 GO:0005634(PANTHER)|GO:0006355(PANTHER)|GO:0009640(PANTHER)
Mch11g0147 197 CDD Bbox1_BBX-like 57 100 IPR049808 -
Mch11g0147 197 Gene3D Classic Zinc Finger 1 96 - -
Mch11g0147 197 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270(InterPro)
Mch11g0147 197 Pfam B-box zinc finger 3 45 IPR000315 GO:0008270(InterPro)
Mch11g0147 197 Pfam B-box zinc finger 57 96 IPR000315 GO:0008270(InterPro)
Mch11g0147 197 SMART bboxneu5 53 100 IPR000315 GO:0008270(InterPro)
Mch11g0147 197 SMART bboxneu5 4 47 IPR000315 GO:0008270(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0147 Mch-Chr11:924436 Mch4g0563 Mch-Chr4:3576947 4.46E-57 dispersed
Mch10g0804 Mch-Chr10:5576670 Mch11g0147 Mch-Chr11:924436 2.32E-23 transposed
Mch11g0147 Mch-Chr11:924436 Mch2g1076 Mch-Chr2:7253384 1.22E-42 wgd
Mch11g0147 Mch-Chr11:924436 Mch8g0821 Mch-Chr8:5837414 2.88E-67 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42542 PF00643 zf-B_box 2.30E-06 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0147 - - - 0.0