Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Mch11g0149 | TCCATGGCGCGAGGGAAGATCCAGATCAAGAGAATCGAAAACCCTACGAACAGGCAGGTGACCTACTCGAAGCGGCGCAACGGCCTCTTCAAGAAGGCCAACGAACTCACCGTCCTCTGCGACGCCACGGTCTCCATTATCATGTTCTCCAGCACCGGAAAACTCCACGAGTACATCAGCCCCGCCACCTCGACGAAGGAGCTGTTCGATCAGTACCAGAAGACTTTAGGCGTCGATCTATGGATCTCTCACTACGAGAGAATGCAAGAGAATCTCAAGAAGCTCAAGGATGTAAATAGAAATCTTCGCAGGCAAATTAGGCAGAGGATGGGGGAATGCATGAACGATTTGAGTTTTGAGGAGCTGCGCTGTCTCGAGCAAGATATGGACAACGCTGTGAGGATCATCCGTGAACGCAAGTATCGAGTGATATCAAACCAGATTGAAACGCACAAGAAAAAGTTAAAAAGTGTAGGAGAAATACACAAGAGTCTTCTCCAGGAGTTTGATATTGCAACAGAGGAAGATCCACATTATGGTTTGGTAGACAATGGAGGAGTAGGAGGAGATTATGATTCTATTATGGGCTTCTCTGGCGGCGGTCCTCGCATATTTGCCCTGCGTTTACAGCCAAACCACCCCAATATTCACCACGCGCCGCCTCCAGATCTCACAACCTATCCACTGCTCGAGTAA | 696 | 48.99 | SMARGKIQIKRIENPTNRQVTYSKRRNGLFKKANELTVLCDATVSIIMFSSTGKLHEYISPATSTKELFDQYQKTLGVDLWISHYERMQENLKKLKDVNRNLRRQIRQRMGECMNDLSFEELRCLEQDMDNAVRIIRERKYRVISNQIETHKKKLKSVGEIHKSLLQEFDIATEEDPHYGLVDNGGVGGDYDSIMGFSGGGPRIFALRLQPNHPNIHHAPPPDLTTYPLLE | 231 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
11 | 937908 | 941367 | - | MC11g0134 | Mch11g0149 | 679083 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Mch11g0149 | 231 | ProSiteProfiles | K-box domain profile. | 85 | 175 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) | |
Mch11g0149 | 231 | ProSitePatterns | MADS-box domain signature. | 4 | 58 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch11g0149 | 231 | SUPERFAMILY | SRF-like | 4 | 96 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch11g0149 | 231 | FunFam | MADS-box transcription factor 16 | 14 | 98 | - | - | |
Mch11g0149 | 231 | Coils | Coil | 85 | 112 | - | - | |
Mch11g0149 | 231 | PRINTS | MADS domain signature | 24 | 39 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch11g0149 | 231 | PRINTS | MADS domain signature | 39 | 60 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch11g0149 | 231 | PRINTS | MADS domain signature | 4 | 24 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch11g0149 | 231 | CDD | MADS_MEF2_like | 3 | 81 | IPR033896 | GO:0000977(InterPro)|GO:0045944(InterPro) | |
Mch11g0149 | 231 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 2 | 164 | IPR050142 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER) | |
Mch11g0149 | 231 | SMART | madsneu2 | 2 | 61 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch11g0149 | 231 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 11 | 58 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch11g0149 | 231 | Gene3D | - | 14 | 80 | IPR036879 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch11g0149 | 231 | ProSiteProfiles | MADS-box domain profile. | 2 | 62 | IPR002100 | GO:0003677(InterPro)|GO:0046983(InterPro) | |
Mch11g0149 | 231 | Pfam | K-box region | 83 | 169 | IPR002487 | GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Mch11g0149 | Mch-Chr11:937908 | Mch11g0856 | Mch-Chr11:5833313 | 5.67E-42 | dispersed | |
Mch11g0149 | Mch-Chr11:937908 | Mch11g0724 | Mch-Chr11:4832939 | 4.19E-29 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
42543 | PF01486 | K-box | 3.10E-22 | No_clan | Mch | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Mch11g0149 | K09264 | - | csv:101218008 | 416.387 |