Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Mch11g0149 TCCATGGCGCGAGGGAAGATCCAGATCAAGAGAATCGAAAACCCTACGAACAGGCAGGTGACCTACTCGAAGCGGCGCAACGGCCTCTTCAAGAAGGCCAACGAACTCACCGTCCTCTGCGACGCCACGGTCTCCATTATCATGTTCTCCAGCACCGGAAAACTCCACGAGTACATCAGCCCCGCCACCTCGACGAAGGAGCTGTTCGATCAGTACCAGAAGACTTTAGGCGTCGATCTATGGATCTCTCACTACGAGAGAATGCAAGAGAATCTCAAGAAGCTCAAGGATGTAAATAGAAATCTTCGCAGGCAAATTAGGCAGAGGATGGGGGAATGCATGAACGATTTGAGTTTTGAGGAGCTGCGCTGTCTCGAGCAAGATATGGACAACGCTGTGAGGATCATCCGTGAACGCAAGTATCGAGTGATATCAAACCAGATTGAAACGCACAAGAAAAAGTTAAAAAGTGTAGGAGAAATACACAAGAGTCTTCTCCAGGAGTTTGATATTGCAACAGAGGAAGATCCACATTATGGTTTGGTAGACAATGGAGGAGTAGGAGGAGATTATGATTCTATTATGGGCTTCTCTGGCGGCGGTCCTCGCATATTTGCCCTGCGTTTACAGCCAAACCACCCCAATATTCACCACGCGCCGCCTCCAGATCTCACAACCTATCCACTGCTCGAGTAA 696 48.99 SMARGKIQIKRIENPTNRQVTYSKRRNGLFKKANELTVLCDATVSIIMFSSTGKLHEYISPATSTKELFDQYQKTLGVDLWISHYERMQENLKKLKDVNRNLRRQIRQRMGECMNDLSFEELRCLEQDMDNAVRIIRERKYRVISNQIETHKKKLKSVGEIHKSLLQEFDIATEEDPHYGLVDNGGVGGDYDSIMGFSGGGPRIFALRLQPNHPNIHHAPPPDLTTYPLLE 231
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
11 937908 941367 - MC11g0134 Mch11g0149 679083
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Mch11g0149 231 ProSiteProfiles K-box domain profile. 85 175 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
Mch11g0149 231 ProSitePatterns MADS-box domain signature. 4 58 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch11g0149 231 SUPERFAMILY SRF-like 4 96 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch11g0149 231 FunFam MADS-box transcription factor 16 14 98 - -
Mch11g0149 231 Coils Coil 85 112 - -
Mch11g0149 231 PRINTS MADS domain signature 24 39 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch11g0149 231 PRINTS MADS domain signature 39 60 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch11g0149 231 PRINTS MADS domain signature 4 24 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch11g0149 231 CDD MADS_MEF2_like 3 81 IPR033896 GO:0000977(InterPro)|GO:0045944(InterPro)
Mch11g0149 231 PANTHER SERUM RESPONSE FACTOR HOMOLOG 2 164 IPR050142 GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0006357(PANTHER)
Mch11g0149 231 SMART madsneu2 2 61 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch11g0149 231 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 58 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch11g0149 231 Gene3D - 14 80 IPR036879 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch11g0149 231 ProSiteProfiles MADS-box domain profile. 2 62 IPR002100 GO:0003677(InterPro)|GO:0046983(InterPro)
Mch11g0149 231 Pfam K-box region 83 169 IPR002487 GO:0003700(InterPro)|GO:0005634(InterPro)|GO:0006355(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Mch11g0149 Mch-Chr11:937908 Mch11g0856 Mch-Chr11:5833313 5.67E-42 dispersed
Mch11g0149 Mch-Chr11:937908 Mch11g0724 Mch-Chr11:4832939 4.19E-29 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
42543 PF01486 K-box 3.10E-22 No_clan Mch TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Mch11g0149 K09264 - csv:101218008 416.387